Carg04622 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04622
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S25
Location	Carg_Chr04: 19352290 .. 19353258 (+)
RNA-Seq Expression	Carg04622
Synteny	Carg04622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGGATGAGGGTACGTCTTTTCTTCCTTTCATCCATCCATGGCTATGCACTTATACTTCAATTTGTTTGTTTTTAACTGCAATATGTTGGTCAACTGATCCTAGCCTGTATCAACATAACCGATCTAACTCGAGCAACCCAACTCAATTCACGAGGTTTGGTTTGTGCTGATAACCAATTTGAAAACCAACCCATAGATTTTTTTTTTTTTTTTTTTTACTTTGGTCAACTAGAACTGCATTTTTTGCACGACTTTATGGTTCAAATAATGCTTTATGTCATCTGCCATATTCAGATCAACGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAAACATAATTGATCTCACTCGTGCCCGGAAGGGTATATAGATGTGTAGCTGCCTTTGCATTTTTGCAATTCCAAATTTTGTTCAGCGAAGAGATTAGATTTTGGTTTGTTAAAATGGCTAGATGATCTCGAAATGTGACGTTTTAATTCGTTTTAGTGTTATTCTGCCTTTGAATCCAGGATCCTCATTGAGTCACTTGGTTCTTATAATCGTGTTATTAGATCAGTTGTTTTAGCTTATTTCTAATCATAATGGTATTCGAAACAAAAACAAGTATGGGAAGAGAAAAGTGTTTTTGTAGATATGGTCATTTTAATATTTAATTGCATTTGGATTGCTTCAAGTTAGAACAAAACTTGAAATTTTAATTAACACCCTCAAATCTAAACACTAATACTAGTTAGCCTAATTAATGATTCTAAAGTTTGTTTAAA

mRNA sequence

CAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGGATGAGGATCAACGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAAACATAATTGATCTCACTCGTGCCCGGAAGGGTATATAGATGTGTAGCTGCCTTTGCATTTTTGCAATTCCAAATTTTGTTCAGCGAAGAGATTAGATTTTGGTTTGTTAAAATGGCTAGATGATCTCGAAATGTGACGTTTTAATTCGTTTTAGTGTTATTCTGCCTTTGAATCCAGGATCCTCATTGAGTCACTTGGTTCTTATAATCGTGTTATTAGATCAGTTGTTTTAGCTTATTTCTAATCATAATGGTATTCGAAACAAAAACAAGTATGGGAAGAGAAAAGTGTTTTTGTAGATATGGTCATTTTAATATTTAATTGCATTTGGATTGCTTCAAGTTAGAACAAAACTTGAAATTTTAATTAACACCCTCAAATCTAAACACTAATACTAGTTAGCCTAATTAATGATTCTAAAGTTTGTTTAAA

Coding sequence (CDS)

CAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGGATGAGGATCAACGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAA

Protein sequence

QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

Homology

[Close]

BLAST of Carg04622 vs. NCBI nr
Match: KAG7032934.1 (40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
          QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM
Sbjct: 1  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60

Query: 61 ARGSIRMISAHSSQEIYTRATNT 84
          ARGSIRMISAHSSQEIYTRATNT
Sbjct: 61 ARGSIRMISAHSSQEIYTRATNT 83

[Close]

BLAST of Carg04622 vs. NCBI nr
Match: XP_022953196.1 (40S ribosomal protein S25-2 [Cucurbita moschata] >XP_023533034.1 40S ribosomal protein S25-2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533042.1 40S ribosomal protein S25-2 isoform X2 [Cucurbita pepo subsp. pepo] >KAG6602255.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 9.8e-36
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQEIYTRATNT
Sbjct: 86  ARGSIRMISAHSSQEIYTRATNT 108

[Close]

BLAST of Carg04622 vs. NCBI nr
Match: XP_022990471.1 (40S ribosomal protein S25-2-like [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLAR+AIKDLM
Sbjct: 87  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARKAIKDLM 146

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQEIYTRATNT
Sbjct: 147 ARGSIRMISAHSSQEIYTRATNT 169

[Close]

BLAST of Carg04622 vs. NCBI nr
Match: XP_004140903.1 (40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein Csa_005769 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. NCBI nr
Match: XP_008456601.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S ribosomal protein S25-2-like [Momordica charantia] >TYK11764.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 6.4e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-35
Identity = 73/83 (87.95%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           A+G IRM+SAHSSQ+IYTRATNT
Sbjct: 86  AKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-34
Identity = 71/83 (85.54%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKLITPS+LSDR+RI+GSLAR+AI+DLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRM+SAH+SQ+IYTRATNT
Sbjct: 86  ARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-34
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           A+G IRM++AHSSQ+IYTRATNT
Sbjct: 86  AKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-33
Identity = 70/82 (85.37%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELM 85

Query: 61  ARGSIRMISAHSSQEIYTRATN 83
           A+G+IRM+SAHSSQ+IYTRAT+
Sbjct: 86  AKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg04622 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 2.6e-31
Identity = 66/81 (81.48%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDR+RINGSLAR+AI+DLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRAT 82
            +G+IRM+S HSSQ+I TRAT
Sbjct: 86  VKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Carg04622 vs. ExPASy TrEMBL
Match: A0A6J1GMB9 (40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111455806 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQEIYTRATNT
Sbjct: 86  ARGSIRMISAHSSQEIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy TrEMBL
Match: A0A6J1JN15 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111487324 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLAR+AIKDLM
Sbjct: 87  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARKAIKDLM 146

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQEIYTRATNT
Sbjct: 147 ARGSIRMISAHSSQEIYTRATNT 169

[Close]

BLAST of Carg04622 vs. ExPASy TrEMBL
Match: A0A0A0KB40 (40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_6G045180 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy TrEMBL
Match: A0A5D3CKR9 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00850 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. ExPASy TrEMBL
Match: A0A6J1BYI5 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-36
Identity = 73/83 (87.95%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           A+G IRM+SAHSSQ+IYTRATNT
Sbjct: 86  AKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-36
Identity = 73/83 (87.95%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 25  KKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 84

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           A+G IRM+SAHSSQ+IYTRATNT
Sbjct: 85  AKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of Carg04622 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-35
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           A+G IRM++AHSSQ+IYTRATNT
Sbjct: 86  AKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Carg04622 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-35
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 25  KKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 84

Query: 61  ARGSIRMISAHSSQEIYTRATNT 84
           A+G IRM++AHSSQ+IYTRATNT
Sbjct: 85  AKGVIRMVAAHSSQQIYTRATNT 107

[Close]

BLAST of Carg04622 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-34
Identity = 70/82 (85.37%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1   QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 60
           +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELM 85

Query: 61  ARGSIRMISAHSSQEIYTRATN 83
           A+G+IRM+SAHSSQ+IYTRAT+
Sbjct: 86  AKGTIRMVSAHSSQQIYTRATH 107

The following BLAST results are available for this feature:

BLAST of Carg04622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032934.1	3.4e-36	100.00	40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022953196.1	9.8e-36	98.80	40S ribosomal protein S25-2 [Cucurbita moschata] >XP_023533034.1 40S ribosomal p...	[more]
XP_022990471.1	2.2e-35	97.59	40S ribosomal protein S25-2-like [Cucurbita maxima]	[more]
XP_004140903.1	3.7e-35	95.18	40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein C...	[more]
XP_008456601.1	6.4e-35	95.18	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S r...	[more]

BLAST of Carg04622 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	5.1e-35	87.95	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
P46301	1.9e-34	85.54	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9T029	5.6e-34	85.54	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q8GYL5	1.6e-33	85.37	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9SIW5	2.6e-31	81.48	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of Carg04622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GMB9	4.8e-36	98.80	40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111455806 PE=3 SV=...	[more]
A0A6J1JN15	1.1e-35	97.59	40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111487324 PE=3 SV=1	[more]
A0A0A0KB40	1.8e-35	95.18	40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_6G045180 PE=3 SV=1	[more]
A0A5D3CKR9	3.1e-35	95.18	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BYI5	3.1e-35	95.18	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV...	[more]

BLAST of Carg04622 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	3.6e-36	87.95	Ribosomal protein S25 family protein	[more]
AT2G21580.2	3.6e-36	87.95	Ribosomal protein S25 family protein	[more]
AT4G39200.1	4.0e-35	85.54	Ribosomal protein S25 family protein	[more]
AT4G39200.2	4.0e-35	85.54	Ribosomal protein S25 family protein	[more]
AT4G34555.1	1.2e-34	85.37	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 2..80 e-value: 4.3E-36 score: 123.2
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 1..83
None	No IPR available	GENE3D	3.30.63.20		coord: 1..83 e-value: 1.1E-38 score: 133.1
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04622-RA	Carg04622-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome