Carg04621 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04621
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ferredoxin
Location	Carg_Chr04: 19353755 .. 19355226 (-)
RNA-Seq Expression	Carg04621
Synteny	Carg04621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTACGGTGCCGAAAAATTTTAGGATCTGGACCCCTTTTTTTGCTTTCTTAGTCTCCAATCATGCACCAAAGGAACTTTTCTATTAGTCCTTATTGTGCTAGGAACTTGAGCCTGTTATGGATGTATTCTTTTTGTTGTCGTAATTCAGTCTTTGGTCAATGTTTTAAATTCTTTGATGCTTGTGTTTCATCTTGTCTTTTTTTTTTTTTTTATTGTTGTTATTTCCATCTAATTTTAATGTATCGCGTTGTTATAAGGTATTTTAACCACAATTGTATTTGGCTTTACTTGTTGATCGGTTTAAAATTTGATTTTCGTTCAAGAATGAAATGTCATTAAGACTTTCCATGTCCAGTTAGTCATCTGGAACTATGAAATGTTATTGAAACTTTCCATGTCCAGTTAGTCATCTGGAACTATCTCACATCCTCGATTGATTTTTTTTTTTTTTTAAAACTACCACTCAATTTTTAAATTGCTGGAGCTTGTGTGGAATGAGCGTAGTTGATGGAATCTCCAGCATTTTGACGCTATTATGTGAAATATTATGAAGTTGTTTTGTAGTCAAGATCTTGTATGTTTCATTTTGCTGGTTTATCTTTTCATCTTCATTTTCTAATAATAAAGTGTATGATTTCAAGGGTAGAAGTAGCTAAGTTGCTGTGTACTTAATTATCTCTAATCTTCTATTGTGTCTGATCGATGATCGAGGTTTTTCTTTCCTCCTGTTTAAATTCCCTTATTTTATTTTCATGGCTTCAGCTTTCACTACTCGACTCCGATCATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGATTTCTTTGTTTGCATGCATTATATCAGTTCAATCTGATTGAAACTTCAATCACTCTCAGACTCTTTTGTGCTTAGTTTTTGAGGTTGATATGTCAATCACTAGAATTGTGTTCACTCTACTGCGAATTAGATGCTGCTTTAGCTAAAAAGGTGAAGCTTTGAACATTATTCATGAATAATAGATATTGGTGTCAAATTTTAGCAAGTAATTGAATGTGCAAATTTGGAGGAGT

mRNA sequence

ATGTGCTTTCACTACTCGACTCCGATCATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGATTTCTTTGTTTGCATGCATTATATCAGTTCAATCTGATTGAAACTTCAATCACTCTCAGACTCTTTTGTGCTTAGTTTTTGAGGTTGATATGTCAATCACTAGAATTGTGTTCACTCTACTGCGAATTAGATGCTGCTTTAGCTAAAAAGGTGAAGCTTTGAACATTATTCATGAATAATAGATATTGGTGTCAAATTTTAGCAAGTAATTGAATGTGCAAATTTGGAGGAGT

Coding sequence (CDS)

ATGTGCTTTCACTACTCGACTCCGATCATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGA

Protein sequence

MCFHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF

Homology

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: KAG7032935.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MCFHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSA 60
           MCFHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSA
Sbjct: 1   MCFHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSA 60

Query: 61  MASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQ 120
           MASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQ
Sbjct: 61  MASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQ 120

Query: 121 TDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           TDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 TDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 158

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: KAG6602256.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314.3 bits (804), Expect = 5.9e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 3   FHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA 62
           FHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA
Sbjct: 375 FHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA 434

Query: 63  SYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTD 122
           SYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTD
Sbjct: 435 SYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTD 494

Query: 123 GSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           GSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 495 GSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 530

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_022922440.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root R-B2-like [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_023533022.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 2.2e-76
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSL SFRSVSRAFGLK+SSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRSVSRAFGLKASSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_022990479.1 (ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022990480.1 ferredoxin, root R-B2-like [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 8.3e-76
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSL SFR+VSRAFGLKSSSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.0e-49
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 10  MSTVRLPTSC-LIRNA-TPRKSCALVQRPSSLSSFRSVSRAFGLKSS-SFKVSAMASYKV 69
           MST    TSC L+ N  T + S   V+ PSSLS F  V++   LK+S    VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 70  KLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 129
           KL+GP GEE+EF+APDD YILD+AE+AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 130 DDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           DD Q E+GYVLTCV+YP+SDCVIHTHKEGDL+
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of Carg04621 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.5e-46
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 10  MSTVRLP----TSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS-- 69
           M+TVR+     T  ++R+ T  K         S+ S + VSR+FGLK S+    A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 70  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 129
           YKVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 130 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +LF
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Carg04621 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.0e-41
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 62  ASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQT 121
           A YKVKLIGP GEENEFE  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 122 DGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           +GSFL+D   EKG+VLTCVAYPQSDCVIHTHKE +LF
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of Carg04621 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.4e-40
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 62  ASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQT 121
           A YKVKLIGP+G+ENEF+ PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 122 DGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           DGSFL+D   EKGYVLTCVAYPQSD VIHTHKE +LF
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of Carg04621 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.4e-39
Identity = 74/118 (62.71%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 43  RSVSRAFGLKSSSFKVSAMAS--YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYS 102
           R  +RA G + SS  V++ A+  +KVKL+GP+G E+EFEAPDDTYIL++AE+AG++LP+S
Sbjct: 38  RQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFS 97

Query: 103 CRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           CRAG+CSTCAG++ +G VDQ++GSFLDD QM +GY+LTC++YP++DCVIHTHKE DL+
Sbjct: 98  CRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

[Close]

BLAST of Carg04621 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSL SFR+VSRAFGLKSSSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. ExPASy TrEMBL
Match: A0A6J1K096 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.6e-70
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA-SYKVKL 69
           MS + LPTSCLI++ATPR+SCALVQRPSSL SFRSVSRAFGLKSSSFKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 70  IGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 129
           IGPNGEENEFEAPDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 130 QQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
            QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of Carg04621 vs. ExPASy TrEMBL
Match: A0A6J1FEX9 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.8e-69
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA-SYKVKL 69
           MS + LPTSCLI++ATPR+SCALVQRPSSL S RSVSRAFGLKSSSFKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLRSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 70  IGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 129
           IGPNGEENEFEAPDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 130 QQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
            QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of Carg04621 vs. ExPASy TrEMBL
Match: A0A6J1BZM5 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111006691 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.9e-68
Identity = 128/149 (85.91%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MST+ L TSC++++ATPR+S ALVQRPSSL +FR+VSRAFGLKSSSF+VSAMASYKVKLI
Sbjct: 1   MSTISLSTSCMVKSATPRRSYALVQRPSSLGAFRNVSRAFGLKSSSFRVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQ+DGSFLDD 
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGY+LTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Carg04621 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 185.3 bits (469), Expect = 3.9e-47
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 10  MSTVRLP----TSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS-- 69
           M+TVR+     T  ++R+ T  K         S+ S + VSR+FGLK S+    A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 70  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 129
           YKVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 130 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +LF
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Carg04621 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-38
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 34  QRPSSLSS--FRSVSRAFGLKSSSF---KVSAMASYKVKLIGPNGEENEFEAPDDTYILD 93
           Q P SL S  F +    FGLKSS+    +V+AMA+YKVK I P GE+ E E  +D Y+LD
Sbjct: 20  QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLD 79

Query: 94  SAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCV 153
           +AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD+QM +GYVLTCVAYP SD V
Sbjct: 80  AAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVV 139

Query: 154 IHTHKE 155
           I THKE
Sbjct: 140 IETHKE 144

[Close]

BLAST of Carg04621 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 4.4e-35
Identity = 81/146 (55.48%), Postives = 104/146 (71.23%), Query Frame = 0


Query: 17  TSCLIRNATPRKSCALVQRPSSLSSFRSVS--RAFGLKSSSF---KVSAMASYKVKLIGP 76
           +S ++  +  R+S A    P SL S  S +    FGLKS +    +V+AMA+YKVK I P
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITP 66

Query: 77  NGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQM 136
            G E E E  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD+Q+
Sbjct: 67  EG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 126

Query: 137 EKGYVLTCVAYPQSDCVIHTHKEGDL 158
            +G+VLTC AYP SD  I THKE D+
Sbjct: 127 GEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of Carg04621 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 49  FGLKSSS---FKVSAMASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGA 108
           FGL SS     KV A  S KVKLI P GEE E E  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 109 CSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDL 158
           C TC G++VSG VDQ+ GSFL+++Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of Carg04621 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-16
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 11  STVRLPTSCL-------IRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS 70
           ST+ LP   L       +RNAT         R + L++ R ++RA               
Sbjct: 11  STISLPKPYLSNSFSFPLRNAT---LSTTTNRRNFLTTGRIIARA--------------- 70

Query: 71  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 130
           YKV ++  +G+  E E   D  IL  A  +GLD+PY C  G C TC  ++V+GTVDQ+ G
Sbjct: 71  YKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-G 130

Query: 131 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDL 158
             L D  +E+GY L C +YP SDC I    E +L
Sbjct: 131 GMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of Carg04621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032935.1	2.4e-83	100.00	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6602256.1	5.9e-82	100.00	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922440.1	3.4e-77	100.00	ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root...	[more]
XP_023533022.1	2.2e-76	98.66	ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990479.1	8.3e-76	97.99	ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022990480.1 ferredoxin, root R...	[more]

BLAST of Carg04621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	4.0e-49	66.45	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	5.5e-46	61.94	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14937	9.0e-41	78.35	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P14936	3.4e-40	77.32	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P94044	8.4e-39	62.71	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]

BLAST of Carg04621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8R7	1.6e-77	100.00	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]
A0A6J1JQ79	4.0e-76	97.99	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]
A0A6J1K096	5.6e-70	90.00	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1	[more]
A0A6J1FEX9	4.8e-69	89.33	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1	[more]
A0A6J1BZM5	6.9e-68	85.91	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111006691 PE=3 SV=1	[more]

BLAST of Carg04621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	3.9e-47	61.94	ferredoxin 3	[more]
AT1G10960.1	5.6e-38	64.29	ferredoxin 1	[more]
AT1G60950.1	4.4e-35	55.48	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	1.4e-33	59.82	ferredoxin 4	[more]
AT4G14890.1	3.5e-16	36.36	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 62..158 e-value: 9.3E-50 score: 164.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 71..144 e-value: 5.2E-20 score: 71.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 64..155 score: 12.996633
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 69..150 e-value: 4.78472E-32 score: 107.866
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 61..158 e-value: 1.7E-36 score: 126.0
None	No IPR available	PANTHER	PTHR43112:SF31	FERREDOXIN	coord: 10..158
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 10..158
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 101..109
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 47..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04621-RA	Carg04621-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding