Carg04560 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04560
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 19760577 .. 19761869 (-)
RNA-Seq ExpressionCarg04560
SyntenyCarg04560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAAAGTAAGAAAAATTTTCTGCCATATGAACCAGATGAAGATCATCTGTGAGCCACACACGAACAATGTCGAGGGGATATTTTTCTGGCAACTATTTTGTGCCAAATAGAGACAAGTGGGTGGGGAAAGTTCTTCTAAATGCCTCAAACACTGATTTACCGTTAGAATTTGCTATTCCTTACTTTCTCTCCCTCTCTCCCTGATTTGGAGATAACTTCACCCCTCCAAATGGCTAAACTTGTGAAGTGCCGGATTTGCAACAAACAGAGGAATCCTAGTCAAAATTCCTTCTTTAAATCTCTTTCAAAAAAGAATCAAAGCACTCTAAACTATTCAGGGACACTAGGACTGGTCGTTTGCAACTCTACTTAGAAAGAAAAATTTCTTAAAGAGGTGAAGTTTTTCCTTTTGGACTCTTCATTTAGGGAGCCTTACTGGACGAATGTGTTCTGTTCTAGTTAAGAACACAACTATATATGGTTGGTATCATCGTTTTTTCGCCTGGTCTGCGTTCAAATATTGCACTAAACTCCTTTCATTAGCATTATAATGGTATTTTATGGCATGTATCTCTTAGCTTAAAATACTACGCATGGTTGCTTTCCACTTGGAAAAAGTTGCCTTGTACATGGTCGCTGATTTTGCCTGTTTTTGTTCACTTAATGCAGGGCATGGAAAGCCATACGGTGGGCTTTGCTTTCACTCTCTCGTTAGCCAGCTCAATGATCTGGTACGGGGTTGCCTGTTTAATTTGTATTATAATAAGCATATATTATTATGACTGTTTCAGAATCAAACTCGCAAGTTGGGACTTCATGTAATGCAATCAAACTGCTTATCCGGTGATATTATATGTGTGGTAACTTCTATTATATTTATGATCTAAGGCCTGTTTGGTTTTGTGTTTTCATTTTGAAAGAACTATATAGACGACAATGGAACAATATGGTCCTAGAGATGAACTGTCATTCTCGATCCTATGATTTTTTCTATTACTTTCCTTGTTGCCTCATTTATTTGAATAATTAGGATGGAGGCCACAGAATCATTGTTTGAAGATTCGAATTCTTTGTCTGCAAATGAATAATTATAATCTATTTTTTAAGTTCTTAATTAAAGAAAAAATTGTGTGTGTATACTAAGTTGTCTATTTGAAACTTTAAACAAAGTGTCGAGTATTACTGCCAGGAAAGAGCAAGCTGGGTCTATGAGAACTAGGCTTGATTTTTAATTAGTTGTGAGGTTCATAGTCATCACCAGAGTCAACGTCATGGAACATTTTTTTTT

mRNA sequence

ATGCCAGAAAGGCATGGAAAGCCATACGGTGGGCTTTGCTTTCACTCTCTCGTTAGCCAGCTCAATGATCTGGTACGGGGTTGCCTGTTTAATTTGTATTATAATAAGCATATATTATTATGACTGTTTCAGAATCAAACTCGCAAGTTGGGACTTCATGTAATGCAATCAAACTGCTTATCCGGTGATATTATATGTGTGGTAACTTCTATTATATTTATGATCTAAGGCCTGTTTGGTTTTGTGTTTTCATTTTGAAAGAACTATATAGACGACAATGGAACAATATGGTCCTAGAGATGAACTGTCATTCTCGATCCTATGATTTTTTCTATTACTTTCCTTGTTGCCTCATTTATTTGAATAATTAGGATGGAGGCCACAGAATCATTGTTTGAAGATTCGAATTCTTTGTCTGCAAATGAATAATTATAATCTATTTTTTAAGTTCTTAATTAAAGAAAAAATTGTGTGTGTATACTAAGTTGTCTATTTGAAACTTTAAACAAAGTGTCGAGTATTACTGCCAGGAAAGAGCAAGCTGGGTCTATGAGAACTAGGCTTGATTTTTAATTAGTTGTGAGGTTCATAGTCATCACCAGAGTCAACGTCATGGAACATTTTTTTTT

Coding sequence (CDS)

ATGCCAGAAAGGCATGGAAAGCCATACGGTGGGCTTTGCTTTCACTCTCTCGTTAGCCAGCTCAATGATCTGGTACGGGGTTGCCTGTTTAATTTGTATTATAATAAGCATATATTATTATGA

Protein sequence

MPERHGKPYGGLCFHSLVSQLNDLVRGCLFNLYYNKHILL
Homology
[Close]
BLAST of Carg04560 vs. NCBI nr
Match: KAG7032994.1 (hypothetical protein SDJN02_07046, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MPERHGKPYGGLCFHSLVSQLNDLVRGCLFNLYYNKHILL 41
          MPERHGKPYGGLCFHSLVSQLNDLVRGCLFNLYYNKHILL
Sbjct: 1  MPERHGKPYGGLCFHSLVSQLNDLVRGCLFNLYYNKHILL 40

The following BLAST results are available for this feature:
BLAST of Carg04560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032994.12.1e-15100.00hypothetical protein SDJN02_07046, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04560-RACarg04560-RAmRNA