Carg04550 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04550
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr04: 19815225 .. 19817268 (-)
RNA-Seq Expression	Carg04550
Synteny	Carg04550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTCCCACTCTCTCTTCAATCTCTGCCACTGTTTTTCAATGGCTTCCAACACATTGATGAGCTTCGGCATTGCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCACCGGTGTCCCGATTTCCGGCGTCTCCGTTAATGCTTCCTCTCGATTTTCCATGTCCGCTGACTGGATGCCTGGCCAGCCCCGCCCACCGTACCTTGACGGCTCTGCCCCCGGGTATTGAAATTTGAAATGTTCTATCTATTTCGAAAAATCTGGTGGTTCTTTTTTTTTTTTGTTGATGTGGGATGATTGCCCTCTAGATGTTTGATGAAATGCCTGAGTCACGACTGTCTTTTGGGTGCTGTGAATTGTCCTTGGTTTGTTGAAATTATTAGAGAATGTGAATCCATGTTTGAATTTACTGTTACTTAGTTCTTGAGATGTGTGGTTGTGCTTAACAGTGATTTTGACTTTGGCCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAATCTGATGGTTTCTTTTGTTGATGTGGGATGATTGTCCTCTAGATGTTTGATGAAATGCCTGAGTCACGACTGTCTTTTGGGTGCTGTGAATTGTCCTTGATTTGTTGAAATTGTTAGAGAATGTGAATCCATGTTTGAATTTACTGTTACTTATTTCTTGAGATGTGTGGTTGTGTTCAACAGTGATTTTGGCTTTGACCCTCTTCGGTTGGGAGAAGTACCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGTTTTCCAAATCCAGTTGCTTGATTCAGAATTATGGGGCTGTTCTTTTTCTCCACCGATGATGAATTTTCACACTCTTTGTTCTGTTTTTCAGCCAGGGATGTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCTATTCCAGGAGGCCAAGCTACCTACCTGGGGCAACCAGTCCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAAGACCCAGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGACCCATTGGGCTACTCCAAAAACCCTGAAAAGCTGAAGGAATACAAAGTCAAGGAGATCAAAAATGGTGAGGCCTTTCATTTCCACTAGAACTTGAAGCATTCTGTTAGGAAAGAACGTGAAAAATGACTAGTTTTTTTTGTAGGTCGGTTGGCGTTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCACTCGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGAACGATTTCCCCTTGAATTTTGTCTTAAATCATACCAAATGTAATTAAATTTCTCCCTGTCCTGAATCTGAACTCGATGGTTTTCCCTCCCTTTGCGGCTATGAATGTGCTCTGTATCTTGATATTGCCCCTCATTTCAGTGCATCAAGTTACCATTGGAGGAAAAATGAAGCATCATTTAGCATAAGACTCCATTATTTGTTTTATTCACCACTAGTTTGCCCTTACCTATTTGTGCTCGAGCCTCTCCTTCACCTCGTAAACTCAGCACCTATTTGTTTAAGTCTCTCTATCATTTAAACCGGGCTCTTGAAATAATCTCCACACACCCTTCTGCCTCGAATGCTCAGCTAAAACTTCAAACCAAAAATCATAACTAATAGTTAATAATTCCATTAGGATTTTATCATCAATCTCTAATTGGGCTAGTCATTGCAAGCCTGTAAAACACAATGGTGGACTTCGGCCCAATCTGATTAACAAGCAAGTGGTGGTGTGAGCCCAATAGATCATTACACTCCATTGGGCTAAAGGCCCATAAACCTGGACAAGAAAGCCCAAATAAACGGGCCCATTGAATGATGAAAATTGACTAAATTAAATAGGTAGAAGTTTCATATATATATATATATA

mRNA sequence

CCATTCCCACTCTCTCTTCAATCTCTGCCACTGTTTTTCAATGGCTTCCAACACATTGATGAGCTTCGGCATTGCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCACCGGTGTCCCGATTTCCGGCGTCTCCGTTAATGCTTCCTCTCGATTTTCCATGTCCGCTGACTGGATGCCTGGCCAGCCCCGCCCACCGTACCTTGACGGCTCTGCCCCCGGATGTGTGGTTGTGTTCAACAGTGATTTTGGCTTTGACCCTCTTCGGTTGGGAGAAGTACCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATGTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCTATTCCAGGAGGCCAAGCTACCTACCTGGGGCAACCAGTCCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAAGACCCAGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGACCCATTGGGCTACTCCAAAAACCCTGAAAAGCTGAAGGAATACAAAGTCAAGGAGATCAAAAATGGTCGGTTGGCGTTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCACTCGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGAACGATTTCCCCTTGAATTTTGTCTTAAATCATACCAAATGTAATTAAATTTCTCCCTGTCCTGAATCTGAACTCGATGGTTTTCCCTCCCTTTGCGGCTATGAATGTGCTCTGTATCTTGATATTGCCCCTCATTTCAGTGCATCAAGTTACCATTGGAGGAAAAATGAAGCATCATTTAGCATAAGACTCCATTATTTGTTTTATTCACCACTAGTTTGCCCTTACCTATTTGTGCTCGAGCCTCTCCTTCACCTCGTAAACTCAGCACCTATTTGTTTAAGTCTCTCTATCATTTAAACCGGGCTCTTGAAATAATCTCCACACACCCTTCTGCCTCGAATGCTCAGCTAAAACTTCAAACCAAAAATCATAACTAATAGTTAATAATTCCATTAGGATTTTATCATCAATCTCTAATTGGGCTAGTCATTGCAAGCCTGTAAAACACAATGGTGGACTTCGGCCCAATCTGATTAACAAGCAAGTGGTGGTGTGAGCCCAATAGATCATTACACTCCATTGGGCTAAAGGCCCATAAACCTGGACAAGAAAGCCCAAATAAACGGGCCCATTGAATGATGAAAATTGACTAAATTAAATAGGTAGAAGTTTCATATATATATATATATA

Coding sequence (CDS)

ATGGCTTCCAACACATTGATGAGCTTCGGCATTGCCACCACCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCACCGGTGTCCCGATTTCCGGCGTCTCCGTTAATGCTTCCTCTCGATTTTCCATGTCCGCTGACTGGATGCCTGGCCAGCCCCGCCCACCGTACCTTGACGGCTCTGCCCCCGGATGTGTGGTTGTGTTCAACAGTGATTTTGGCTTTGACCCTCTTCGGTTGGGAGAAGTACCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATGTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCTATTCCAGGAGGCCAAGCTACCTACCTGGGGCAACCAGTCCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAAGACCCAGAGAAGAAGAAGTACCCTGGAGGTGCTTTTGACCCATTGGGCTACTCCAAAAACCCTGAAAAGCTGAAGGAATACAAAGTCAAGGAGATCAAAAATGGTCGGTTGGCGTTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCACTCGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGAACGATTTCCCCTTGA

Protein sequence

MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYLDGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTISP

Homology

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BLAST of Carg04550 vs. NCBI nr
Match: KAG7033004.1 (Chlorophyll a-b binding protein 6A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523.1 bits (1346), Expect = 1.3e-144
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN
Sbjct: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 253

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BLAST of Carg04550 vs. NCBI nr
Match: XP_022921712.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_023515265.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6602321.1 Chlorophyll a-b binding protein 6A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 501.1 bits (1289), Expect = 5.5e-138
Identity = 246/253 (97.23%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

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BLAST of Carg04550 vs. NCBI nr
Match: XP_022990443.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 500.0 bits (1286), Expect = 1.2e-137
Identity = 245/253 (96.84%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYS+NPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSRNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

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BLAST of Carg04550 vs. NCBI nr
Match: XP_004143800.1 (chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus])

HSP 1 Score: 486.9 bits (1252), Expect = 1.1e-133
Identity = 238/253 (94.07%), Postives = 243/253 (96.05%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA GVPISGV+VNASSRFSMSA+WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPL LGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSK+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

[Close]

BLAST of Carg04550 vs. NCBI nr
Match: XP_008453995.1 (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo] >KAA0048040.1 chlorophyll a-b binding protein 6A [Cucumis melo var. makuwa])

HSP 1 Score: 486.1 bits (1250), Expect = 1.8e-133
Identity = 237/253 (93.68%), Postives = 243/253 (96.05%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA  VPISGV+VNASSRFSMS++WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSK+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

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BLAST of Carg04550 vs. ExPASy Swiss-Prot
Match: P12360 (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB6A PE=2 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.4e-115
Identity = 207/253 (81.82%), Postives = 218/253 (86.17%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GI     PS LSS+KSKFA  +P+   + N  SRFSMSADWMPGQPRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFD L LGEVP NLER+KESELIHCRWAMLAVPG++VPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSK+P K +E KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGD+IIP+ I P
Sbjct: 241 NIGDVIIPKGIFP 245

[Close]

BLAST of Carg04550 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 3.7e-113
Identity = 203/249 (81.53%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLG 120
           LDGSAPG       DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG G
Sbjct: 61  LDGSAPG-------DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG 120

Query: 121 NWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGG 180
           NWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGG
Sbjct: 121 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGG 180

Query: 181 AFDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 240
           AFDPLGYSK+P+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 181 AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 239

Query: 241 NNIGDIIIP 249
           NNIGDI+IP
Sbjct: 241 NNIGDIVIP 239

[Close]

BLAST of Carg04550 vs. ExPASy Swiss-Prot
Match: Q9SDM1 (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 8.6e-102
Identity = 176/235 (74.89%), Postives = 195/235 (82.98%), Query Frame = 0


Query: 17  PSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYLDGSAPGCVVVFNSDFG 76
           PS+L+ S     +G+P    +   S R +MSA+W PGQPRP +LDGS+PG       DFG
Sbjct: 16  PSLLAPSSRSGRSGLPFCAYA-TTSGRVTMSAEWFPGQPRPAHLDGSSPG-------DFG 75

Query: 77  FDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGGQAT 136
           FDPL L  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWAA+P GQAT
Sbjct: 76  FDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQAT 135

Query: 137 YLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKNPEKLKEY 196
           YLG PVPWG LPTIL IEFLAIAF E QR+MEKDPEKKKYPGGAFDPLG+SK+P K +E 
Sbjct: 136 YLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEL 195

Query: 197 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRTI 252
           K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+IPR I
Sbjct: 196 KLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242

[Close]

BLAST of Carg04550 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.2e-36
Identity = 96/243 (39.51%), Postives = 128/243 (52.67%), Query Frame = 0


Query: 20  LSSSKSKFATGVPISGVSVNASSRFSMSA---DWMPGQPRPPYLDGSAPGCVVVFNSDFG 79
           L  S  K   GV    V  + S+ F + A   +W+PG   P YL GS PG       D G
Sbjct: 23  LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPG-------DNG 82

Query: 80  FDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQEWAAIPGGQAT 139
           FDPL L E PENL  F ++EL++ RWAML V GML+PE       +   +W A   G+  
Sbjct: 83  FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEE 142

Query: 140 YLGQPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKK---------YPGG 199
           Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG
Sbjct: 143 Y------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG 202

Query: 200 AFDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 243
            F+PL ++       E K KEI NGRLA+LAF+GF +Q +   G GP +NL  H++DPWH
Sbjct: 203 IFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWH 245

[Close]

BLAST of Carg04550 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-35
Identity = 94/239 (39.33%), Postives = 125/239 (52.30%), Query Frame = 0


Query: 50  WMPGQPRPPYLDGSAPGCVVVFNSDFGFDPLRLGEVPE---------------------- 109
           W PG   P +LDGS  G       D+GFDP  LG+  E                      
Sbjct: 58  WYPGAISPDWLDGSLVG-------DYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 117

Query: 110 ---------------------NLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 169
                                 ++RF+E ELIH RWAMLA  G L  E L    W  A +
Sbjct: 118 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGK 177

Query: 170 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLG 229
              + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG
Sbjct: 178 VELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLG 237

Query: 230 YSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 245
            + +PEK  + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 LAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]

BLAST of Carg04550 vs. ExPASy TrEMBL
Match: A0A6J1E190 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111429876 PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.7e-138
Identity = 246/253 (97.23%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

[Close]

BLAST of Carg04550 vs. ExPASy TrEMBL
Match: A0A6J1JTA7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487298 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 5.9e-138
Identity = 245/253 (96.84%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL
Sbjct: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYS+NPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSRNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

[Close]

BLAST of Carg04550 vs. ExPASy TrEMBL
Match: A0A0A0KNM4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.2e-134
Identity = 238/253 (94.07%), Postives = 243/253 (96.05%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA GVPISGV+VNASSRFSMSA+WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPL LGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSK+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

[Close]

BLAST of Carg04550 vs. ExPASy TrEMBL
Match: A0A5A7TXV7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001080 PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 8.8e-134
Identity = 237/253 (93.68%), Postives = 243/253 (96.05%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA  VPISGV+VNASSRFSMS++WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSK+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

[Close]

BLAST of Carg04550 vs. ExPASy TrEMBL
Match: A0A1S3BYE0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494548 PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 8.8e-134
Identity = 237/253 (93.68%), Postives = 243/253 (96.05%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKFATGVPISGVSVNASSRFSMSADWMPGQPRPPYL 60
           MASNTLMS GIATTAFPSVLSSSKSKFA  VPISGV+VNASSRFSMS++WMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLGN 120
           DGSAPG       DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPG+LVPEALGLGN
Sbjct: 61  DGSAPG-------DFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGN 120

Query: 121 WVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180
           WVKAQEWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA
Sbjct: 121 WVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA 180

Query: 181 FDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240
           FDPLGYSK+PEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 181 FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 240

Query: 241 NIGDIIIPRTISP 254
           NIGDIIIPRTISP
Sbjct: 241 NIGDIIIPRTISP 246

[Close]

BLAST of Carg04550 vs. TAIR 10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 409.1 bits (1050), Expect = 2.6e-114
Identity = 203/249 (81.53%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLG 120
           LDGSAPG       DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG G
Sbjct: 61  LDGSAPG-------DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG 120

Query: 121 NWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGG 180
           NWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGG
Sbjct: 121 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGG 180

Query: 181 AFDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 240
           AFDPLGYSK+P+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 181 AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 239

Query: 241 NNIGDIIIP 249
           NNIGDI+IP
Sbjct: 241 NNIGDIVIP 239

[Close]

BLAST of Carg04550 vs. TAIR 10
Match: AT3G54890.2 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 325.5 bits (833), Expect = 3.8e-89
Identity = 172/249 (69.08%), Postives = 184/249 (73.90%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLG 120
           LDGSAPG       DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG G
Sbjct: 61  LDGSAPG-------DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG 120

Query: 121 NWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGG 180
           NWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAF                   
Sbjct: 121 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF------------------- 180

Query: 181 AFDPLGYSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 240
                          E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 181 ---------------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 205

Query: 241 NNIGDIIIP 249
           NNIGDI+IP
Sbjct: 241 NNIGDIVIP 205

[Close]

BLAST of Carg04550 vs. TAIR 10
Match: AT3G54890.4 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 316.2 bits (809), Expect = 2.3e-86
Identity = 160/206 (77.67%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLG 120
           LDGSAPG       DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG G
Sbjct: 61  LDGSAPG-------DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG 120

Query: 121 NWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGG 180
           NWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGG
Sbjct: 121 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGG 180

Query: 181 AFDPLGYSKNPEKLKEYKVKEIKNGR 206
           AFDPLGYSK+P+KL+E KVKEIKNG+
Sbjct: 181 AFDPLGYSKDPKKLEELKVKEIKNGK 196

[Close]

BLAST of Carg04550 vs. TAIR 10
Match: AT3G54890.3 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-59
Identity = 117/158 (74.05%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 1   MASNTLMSFGIATTAFPSVLSSSKSKF-ATGVPISGVSVNASSRFSMSADWMPGQPRPPY 60
           MASN+LMS GIA   +PS+LSSSKSKF + GVP+   +     R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLP--NAGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSAPGCVVVFNSDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGMLVPEALGLG 120
           LDGSAPG       DFGFDPL LGEVP NLER+KESELIHCRWAMLAVPG+LVPEALG G
Sbjct: 61  LDGSAPG-------DFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG 120

Query: 121 NWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 158
           NWVKAQEWAA+PGGQATYLG PVPWGTLPTIL IEFLA
Sbjct: 121 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLA 148

[Close]

BLAST of Carg04550 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 151.8 bits (382), Expect = 7.6e-37
Identity = 94/239 (39.33%), Postives = 125/239 (52.30%), Query Frame = 0


Query: 50  WMPGQPRPPYLDGSAPGCVVVFNSDFGFDPLRLGEVPE---------------------- 109
           W PG   P +LDGS  G       D+GFDP  LG+  E                      
Sbjct: 58  WYPGAISPDWLDGSLVG-------DYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 117

Query: 110 ---------------------NLERFKESELIHCRWAMLAVPGMLVPEALGLGNWVKAQE 169
                                 ++RF+E ELIH RWAMLA  G L  E L    W  A +
Sbjct: 118 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGK 177

Query: 170 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLG 229
              + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG
Sbjct: 178 VELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLG 237

Query: 230 YSKNPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 245
            + +PEK  + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 LAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

The following BLAST results are available for this feature:

BLAST of Carg04550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033004.1	1.3e-144	100.00	Chlorophyll a-b binding protein 6A, chloroplastic [Cucurbita argyrosperma subsp....	[more]
XP_022921712.1	5.5e-138	97.23	chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_...	[more]
XP_022990443.1	1.2e-137	96.84	chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima]	[more]
XP_004143800.1	1.1e-133	94.07	chlorophyll a-b binding protein 6A, chloroplastic [Cucumis sativus]	[more]
XP_008453995.1	1.8e-133	93.68	PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo] >KAA...	[more]

BLAST of Carg04550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12360	1.4e-115	81.82	Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q01667	3.7e-113	81.53	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SDM1	8.6e-102	74.89	Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ...	[more]
Q9SQL2	8.2e-36	39.51	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
Q07473	1.1e-35	39.33	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg04550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E190	2.7e-138	97.23	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JTA7	5.9e-138	96.84	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KNM4	5.2e-134	94.07	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7TXV7	8.8e-134	93.68	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BYE0	8.8e-134	93.68	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Carg04550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54890.1	2.6e-114	81.53	photosystem I light harvesting complex gene 1	[more]
AT3G54890.2	3.8e-89	69.08	photosystem I light harvesting complex gene 1	[more]
AT3G54890.4	2.3e-86	77.67	photosystem I light harvesting complex gene 1	[more]
AT3G54890.3	2.4e-59	74.05	photosystem I light harvesting complex gene 1	[more]
AT5G01530.1	7.6e-37	39.33	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 51..244 e-value: 1.4E-76 score: 258.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 57..218 e-value: 5.9E-43 score: 147.2
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 31..244
None	No IPR available	PANTHER	PTHR21649:SF89	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 31..244
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 40..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04550-RA	Carg04550-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding