Carg04546 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04546
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA pseudouridine synthase 5
LocationCarg_Chr04: 19834826 .. 19839889 (-)
RNA-Seq ExpressionCarg04546
SyntenyCarg04546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAACGCTACTTCCCGCTCGTGATTCTGCACTGAATTCCTGCATTTCAAGGACCAGTGGCGCGGAATGCATTGCTGGCCAAATTTGTTTCTCGATTTCCACATTCAAGATCAATCCGTATAATGCTCGGAAGGTTCTTTCAGGTTATCGGAATTCCATGGCCAGATCTCAACGACGGCTTGTTCTACAACGATGTCGTTAAGCCCTCCGACTCCGGTTCTCTTTATTTCCGTTGAACTTCGCTTTTCACAGAAGCCATTTCCATTTCATGTTTAGTGATCGCTTCTTCTTTGCGTGATAACTTGTCAGGAAAGTCTTTGATCGAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAATATAAGATATCGGCTCCACTGGAGGGGTAGGCCTACTCAAACTTTTTCTAGATTATCGGATTTTCTCGTGTTTGATATTTCTGATGCTATTGCTGATCGTTAATGAAACTTGTTTTGCATCGATTACTGTTGCAGCGAATTCAGAACGAACAGGTACGGTGGTCTTTAATTTAGGAAATTTATGACTGTTGTGAAAGAGATTGCACTGCTGCACATTATTTGGAACTTGTGTGCGTGCTTGTTTATTTAATTACATTTTATTTTTTTAAAGATGTTTTGAAACAAAATCAATGTGGAAAGTGTAGATAGATCGATGGCCAGGTTGTCACAAACAGTTCTCAGATTATTCACACCGGTCTCTTTACCCCCCATTTTATTAGTTTGTTCAAAATCTTGCATGATAGCTTGAGTTGTTTTCATATATTACAAGCTTTAGAAGATTTGTTCAAAAGTTGTCTATCGTCGGCTGCCATGGAAAGAATCAGATACTCCATATTTGTTCGAGATTTTATACGAAGACGTCGAAACGGTAAATGCATTTTAACTGGTATTTTTAATCTGTGTTATTGGTTGCTTCCAATTCCCTTGAAGTTGTGAGCTACCAACTATTTTTCAGATTGCATTAAGTAAGCCGTCTTGTTTGCAAGTATTACCTGGCAGCAATGCACAGTTTTGACGCAGCTTCAATGATGGTCAAGGAAGCAGAGTCCCTCTGACTGAGAAGGGTTGCATCCTGTCCCTGTTCATCGCCTGTGAAGGGGAACTTCAGGTTAGGTGGCATAAACCCGACGCTGGACGAGATTTCCATGAATATGCGGAAGTTTTATTGTTATGTATTGCCATCGTTTGATATCTGATTGCTTGTTTGCCTATAATCCAGTGTCAAATGAAAATTGTTGAAATCCCAATTTACTAGTTTATATGCACAAGGCAGTTGTGATTGTTGAAATGAAACAAATAATTGAGACTGCAATGGAATGTTGAAGATGTGGTATTAGTGACGAATTTAGAGTGCCTCTTTTAACTTTAGATGTCTCCTTTTCCTATTTGGTCTGCCATTTCGGTAAGAATGTAACTGGCCTCCTAGAATTGTTAAAGAGTATAGAAACATCATCAGTTCATAAGCCTGCTGCTCTGATGCTGGGGAGGGTATCAACGTTATGAAGCCTTGAGGCTATTTCTGTATTTCTACCTCATTTCCCGGTCTAATGAAGCACTATTGTCTAAGAATTAGTTATTCTGCTTCTGCTACTCTCCATTTGATAAATTTGTATAGAAACATTTTCTCCTGGACTATTGTCTACTCTTTGGCACAAGGAATTTCCTCCTTTTCGTAATTCACTAACCAACTATTTAGGAAATGTATTTCATGGTTGTGTTTAGAATGCCTCACCAGTCACCCTTATGCTTCATACACAGTTTGCTGCATATTTTGCTGATGGAACATTTTGCGTTGAGAGAAACAGGTTAGGCAATATAACTTTTTGTAAATTTCTCGTCTTGTCTCTGCATGTTATATATATTCAGAGAATGATTATTTTGTTTGTAGTTTCTATAAGCTGCAGACTTTATTGTCTACAGCCATTTCTAACTAGCCGTCCTGGTTCAACAGATTTAATTTTCACCGTTGTTGAAATCTGTCAAAGTTTTTATTTGCTTATCTATGCTACTTTGAGTTTTATTCTTATGATACTTAGGTTATGTAATTTAGCTGTAACTTTTTGTTACTACTACTATATTTTAGAATATAACATGAAGATTCTTCTCAAACATCTGGTAGATGCAGATGCCCTAGCCAGGGGGAAGGAGGCTTTGGATCCTGATATATAGCATATTGCTAAATCACCTAAATAACGATTCAGGACCGCTTGTCTTGCAAACCTAGAAAGATTGATGAATGTGAAATCTGTCTGGTAAACAAATAACAGGTAACAGGCCTCCCCCACCCAGTGTCAGTATCCTGATTTTTGGTAGTAAAGGAAAACAAGAATGAATAAATAATATGAGGAAGTGGCTGGTGACGAAGCAATTATAGATAAAAGGGATAGGTGAGTAATTATTTCAGTCAAGTCCAAAAAAATGCTAGAGAAAGTGCGTCATCTTCTAGGCAAGTATTAGAAACTCATACATTGGTGGGGGAAAGCTCTTTCCAAGGGAAACAAGCAGATCCAGTTATTAAATCGATGAGTTTTCAGTATCTGCACGTTTTCATTTTTGAACTTCTGGCTGTTATAATTGCTAATTTTAGAATATAAGTTGCTAGTTTTCAGAAGTTATCTAGCAAAAAATACATTAATACTAGAAAAATGTGATGTAAACATTCTAGAACATCTGAACATATAATATCTTCGACTTTCTTACTGTTTTTTCTTGTCTAAACTATGCAAGGTACAAAGAGGAATTTTAAAAACTTGTAACTTGAATAATTCAAGATGATGAGGTACATCTATTATGACATTTCTGGTTATGGTTAACCTTTTTCATTTCATCCCTTAAACTAGTTTACTGTTCTGAGAGTAATATTAATCCTGCAGTGTTACTTGTTAGATGATATGTCGGAAATTCTATTAGCAAGGGTCATTTGTTCCTCTGAAATTGCATGAAAATAACGTTGAAAATCTTTGAATATGGTTGACGATTTAAATTTCTTGCAAATGGTTGCGGCACTTGCTCTCTGAGTTAGGGTGCAAAATAATTGGAGGTTACATCACTATGGAGTGAAAGCTAGTTCTGTTTCTTGTCAGAACGTTTTTTTTTTTTCGTTTTTTTTTTCTGTTAATTGCATATAAATGATTAAGAGCGCTTTCTTTGTAGGTGAGCATTGTATTCACATTTTTGTTAGTTTTACTGTCACCAAAGTATATGAGTTTCTTTCACTTTTAAGTATGTCCTAAGCATGGGTATACCTTCCGCTAACCCTCACCACGCTTGTTCTGTGAAATACTTAAGGGGATGTACCTCTCCTTTTTATCATTTCTCCTCTACTGATTTCTTTGAAATAGGTCACAGAGGACTTCTTCTGTTTGTTGAGTTGCAATTACATGCCCAAGAGACTTCTGATTGGTAAAGAAAGAGGGAGGGCTTATTCCATTAGGCTTAAAAGGCACCTTATGTATTTACACGTACTGCAACGACCAAACTTTTATAATCTTCGCATTTGCATTTTCTGCTTGTACGTAAAACTACAATTTAATTTTCTGGTGCGATGGGCTTTACTGCCAAGGTCTAAATTCTTCACTATTTTCCAATTATTTTTGGAAGCCATTTAAAGAGAGTTTGCAGCTGGTCTGATAGTGGAAATATTCTTGATAAAGAGAGTGAACTGTGCGATGCACCACAATTCAAAGGGTTTAAATTTCGTCATATATTTTACAGGTGGAAATTCAATCTGGATGACCCCGCCAAATCCGTGTCCATCTTTCTTCAATAGGCATCCTCTATTGGGTAATGCTTCTTTAAAGTTGATCAATTCTTTCAACTTTTAAATTTTTTGGGGGCTCTCATTGCTTGTTTTGTAGATGAACTTTTTTCTAACAACCATTAGTTGACTTGCGTTTTTGTGAGCTCGCAATTTCATCGACTGTGCTGAAAATGCGTTGCTCAAAAAAAAAAGAAAAAACTGTCTTTTCCTGTTAGGTGATCCTCTCTATGTTGCTGTCCCCATCTTGAATTTGATTCCTCTTTCTTCTTGCAAAGAAACCATGCACATTCTGTCCAGAAGTTACCAAAAGGCTAAGAAACCTGTGCCTGGAGATTATAGCTACTACTTGCACGCACATCAATTGGTCCTTTATCACCCAAGAACCAATGAGGTAAGCTTTGAATTTAGTATATAACATAAGTGTCATACTTCCGTTTTCTTGTCCAGATGCTTGTGTCCTTGAGAATAATAGAGATGCAAAAATTCAATGGTACGATGCATTTATATTTTTTGAACAACGCCCATGTTGGCAGTCAAGTAATATTATAGTAGGCTAGACTCTACTGGGTTATATATGCCTTCACATATGATGCAATTTCATTAGATAACTCTGTTGCATTTGTATGCGTATGGGAAGACAATATTTTCATTTTCATGGTTGGCGCGCATTGGTCTTGTCCAATCATCTCGTGTTAACCTATTCCTATGGAAGCATTCATGATATTTTATATGGCTTCCCCCTTTAAATAAACGTCTCAATTTGTTGAGTTGGCACATGAAGCAAGCATTTTATGTGAAGTAGCTTCCTAGTGCTTTCTTTCTTGTATTTGTTTTGTACTTGTTTCTTTCATGTATGTGACTAAAAAGGGACTTGTCTCTTGTTCATGTTGAAAGGTTGTCAAAATCGTTGAGCCACTCCCTCCGGAAGGGGTCTGAAGATGCCAGAAATGGAGTGGATGAAAAAAGCATAGCATGGATGTCAAAAAGATTAGTCCTATTCTCTTATCCTTATACTTTAATAACACAAGCATATCTTTTCGTTAACGTTTTTTTTTTTTTTCTTTAATGAAAGATATTATAAAAGATAGGTTCTAGAAATCATTTAAGAGATAAGACCTATACATCCTCTTATAGGTCCCCATCAGATCTGCCAACCAGATGTGCTATTTAGGCATGACACTATTAGCCTCTTCTGCCTGAAACATTTAGGAAGATCAAATTCCAAATGAACAGAAATCAAATGGCGATTCCCAACAGCTCCCTAAGCGTTGA

mRNA sequence

ACAACGCTACTTCCCGCTCGTGATTCTGCACTGAATTCCTGCATTTCAAGGACCAGTGGCGCGGAATGCATTGCTGGCCAAATTTGTTTCTCGATTTCCACATTCAAGATCAATCCGTATAATGCTCGGAAGCGAATTCAGAACGAACAGAAGATTTGTTCAAAAGTTGTCTATCGTCGGCTGCCATGGAAAGAATCAGATACTCCATATTTGTTCGAGATTTTATACGAAGACGTCGAAACGAATGCCTCACCAGTCACCCTTATGCTTCATACACAGTTTGCTGCATATTTTGCTGATGGAACATTTTGCGTTGAGAGAAACAGACTTTATTGTCTACAGCCATTTCTAACTAGCCGTCCTGGTGATCCTCTCTATGTTGCTGTCCCCATCTTGAATTTGATTCCTCTTTCTTCTTGCAAAGAAACCATGCACATTCTGTCCAGAAGTTACCAAAAGGCTAAGAAACCTGTGCCTGGAGATTATAGCTACTACTTGCACGCACATCAATTGGTCCTTTATCACCCAAGAACCAATGAGGAAGATCAAATTCCAAATGAACAGAAATCAAATGGCGATTCCCAACAGCTCCCTAAGCGTTGA

Coding sequence (CDS)

ACAACGCTACTTCCCGCTCGTGATTCTGCACTGAATTCCTGCATTTCAAGGACCAGTGGCGCGGAATGCATTGCTGGCCAAATTTGTTTCTCGATTTCCACATTCAAGATCAATCCGTATAATGCTCGGAAGCGAATTCAGAACGAACAGAAGATTTGTTCAAAAGTTGTCTATCGTCGGCTGCCATGGAAAGAATCAGATACTCCATATTTGTTCGAGATTTTATACGAAGACGTCGAAACGAATGCCTCACCAGTCACCCTTATGCTTCATACACAGTTTGCTGCATATTTTGCTGATGGAACATTTTGCGTTGAGAGAAACAGACTTTATTGTCTACAGCCATTTCTAACTAGCCGTCCTGGTGATCCTCTCTATGTTGCTGTCCCCATCTTGAATTTGATTCCTCTTTCTTCTTGCAAAGAAACCATGCACATTCTGTCCAGAAGTTACCAAAAGGCTAAGAAACCTGTGCCTGGAGATTATAGCTACTACTTGCACGCACATCAATTGGTCCTTTATCACCCAAGAACCAATGAGGAAGATCAAATTCCAAATGAACAGAAATCAAATGGCGATTCCCAACAGCTCCCTAAGCGTTGA

Protein sequence

TTLLPARDSALNSCISRTSGAECIAGQICFSISTFKINPYNARKRIQNEQKICSKVVYRRLPWKESDTPYLFEILYEDVETNASPVTLMLHTQFAAYFADGTFCVERNRLYCLQPFLTSRPGDPLYVAVPILNLIPLSSCKETMHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNEEDQIPNEQKSNGDSQQLPKR
Homology
[Close]
BLAST of Carg04546 vs. NCBI nr
Match: KAG7033008.1 (hypothetical protein SDJN02_07060, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.8 bits (1057), Expect = 3.5e-111
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 

Query: 1   TTLLPARDSALNSCISRTSGAECIAGQICFSISTFKINPYNARKRIQNEQKICSKVVYRR 60
           TTLLPARDSALNSCISRTSGAECIAGQICFSISTFKINPYNARKRIQNEQKICSKVVYRR
Sbjct: 1   TTLLPARDSALNSCISRTSGAECIAGQICFSISTFKINPYNARKRIQNEQKICSKVVYRR 60

Query: 61  LPWKESDTPYLFEILYEDVETNASPVTLMLHTQFAAYFADGTFCVERNRLYCLQPFLTSR 120
           LPWKESDTPYLFEILYEDVETNASPVTLMLHTQFAAYFADGTFCVERNRLYCLQPFLTSR
Sbjct: 61  LPWKESDTPYLFEILYEDVETNASPVTLMLHTQFAAYFADGTFCVERNRLYCLQPFLTSR 120

Query: 121 PGDPLYVAVPILNLIPLSSCKETMHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNE 180
           PGDPLYVAVPILNLIPLSSCKETMHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNE
Sbjct: 121 PGDPLYVAVPILNLIPLSSCKETMHILSRSYQKAKKPVPGDYSYYLHAHQLVLYHPRTNE 180

Query: 181 EDQIPNEQKSNGDSQQLPKR 201
           EDQIPNEQKSNGDSQQLPKR
Sbjct: 181 EDQIPNEQKSNGDSQQLPKR 200

[Close]
BLAST of Carg04546 vs. NCBI nr
Match: KAG6602325.1 (RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 7.2e-16
Identity = 53/75 (70.67%), Postives = 55/75 (73.33%), Query Frame = 0 

Query: 51  KICSKVVYRRLPWKESDTPYLFEILYEDVETNA----SPVT-----LML------HTQFA 110
           KICSKVVYRRLPWKESDTPYLFEILYEDVET A     P+T     L L        QFA
Sbjct: 98  KICSKVVYRRLPWKESDTPYLFEILYEDVETIALRSRVPLTEKGCILSLFIACEGELQFA 157

[Close]
BLAST of Carg04546 vs. NCBI nr
Match: XP_022133841.1 (RNA pseudouridine synthase 5 isoform X2 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 86/315 (27.30%), Postives = 107/315 (33.97%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYED---------- 103
           +RIQNEQ               +I S+VVYRRLPWKE DTPYL E+LYED          
Sbjct: 41  QRIQNEQITIDGQIITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPS 100

Query: 104 -----------------------------VETNASPV-----------------TLMLHT 163
                                        V   + PV                 T +  T
Sbjct: 101 GLQVLPGGVFQQRTILTQLQWWSRKQSSSVSEGSHPVPVHRLGRGTSGILLCAKTRLART 160

Query: 164 QFAAYFADGTFCVERNRLYCL----------------------------QP--------- 197
           Q AAYFADG FC+ RNR   +                            QP         
Sbjct: 161 QLAAYFADGAFCIGRNRNTSMVEGTKRKISKIYRALVTGIVHDDEVSIDQPIGRIHYPGV 220

[Close]
BLAST of Carg04546 vs. NCBI nr
Match: XP_022938426.1 (RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata] >XP_022938427.1 RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-11
Identity = 87/319 (27.27%), Postives = 108/319 (33.86%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYEDVE-------- 103
           +RIQNEQ               +I S+VVYRRLPWKE DTPYL E+LYED E        
Sbjct: 54  QRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPS 113

Query: 104 ------------------------TNASPVTLMLH------------------------T 163
                                     +S V+  LH                        T
Sbjct: 114 GLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLART 173

Query: 164 QFAAYFADGTFCVERNRLYCLQ-------------------------------------- 201
           QFAAYFADGT CV RNR   ++                                      
Sbjct: 174 QFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGV 233

[Close]
BLAST of Carg04546 vs. NCBI nr
Match: KAG6578753.1 (RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 86/319 (26.96%), Postives = 108/319 (33.86%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYEDVE-------- 103
           +RIQNEQ               +I S+VVYRRLPWKE DTPYL E+LYED E        
Sbjct: 54  QRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPS 113

Query: 104 ------------------------TNASPVTLMLH------------------------T 163
                                     +S V+  LH                        T
Sbjct: 114 GLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLART 173

Query: 164 QFAAYFADGTFCVERNRLYCLQ-------------------------------------- 201
           QF+AYFADGT CV RNR   ++                                      
Sbjct: 174 QFSAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGV 233

[Close]
BLAST of Carg04546 vs. ExPASy Swiss-Prot
Match: Q5M721 (RNA pseudouridine synthase 5 OS=Arabidopsis thaliana OX=3702 GN=At3g52260 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 3.8e-04
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 54  SKVVYRRLPWKESDTPYLFEILYED 79
           SK+VY RLPWKE DTPY  E+LYED
Sbjct: 79  SKLVYSRLPWKEPDTPYSLEVLYED 103

[Close]
BLAST of Carg04546 vs. ExPASy Swiss-Prot
Match: Q0DST9 (RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0288500 PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 8.5e-04
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0 

Query: 151 YQKAKKPVPGDYSYYLHAHQLVLYHPRTNE 181
           Y++  +PVPGD  Y+LHAH LVL HP TNE
Sbjct: 341 YERPLQPVPGDCGYHLHAHWLVLCHPTTNE 370

[Close]
BLAST of Carg04546 vs. ExPASy TrEMBL
Match: A0A6J1BWA8 (RNA pseudouridine synthase 5 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006297 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 86/315 (27.30%), Postives = 107/315 (33.97%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYED---------- 103
           +RIQNEQ               +I S+VVYRRLPWKE DTPYL E+LYED          
Sbjct: 41  QRIQNEQITIDGQIITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPS 100

Query: 104 -----------------------------VETNASPV-----------------TLMLHT 163
                                        V   + PV                 T +  T
Sbjct: 101 GLQVLPGGVFQQRTILTQLQWWSRKQSSSVSEGSHPVPVHRLGRGTSGILLCAKTRLART 160

Query: 164 QFAAYFADGTFCVERNRLYCL----------------------------QP--------- 197
           Q AAYFADG FC+ RNR   +                            QP         
Sbjct: 161 QLAAYFADGAFCIGRNRNTSMVEGTKRKISKIYRALVTGIVHDDEVSIDQPIGRIHYPGV 220

[Close]
BLAST of Carg04546 vs. ExPASy TrEMBL
Match: A0A6J1FE06 (RNA pseudouridine synthase 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444674 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 87/319 (27.27%), Postives = 108/319 (33.86%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYEDVE-------- 103
           +RIQNEQ               +I S+VVYRRLPWKE DTPYL E+LYED E        
Sbjct: 54  QRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPS 113

Query: 104 ------------------------TNASPVTLMLH------------------------T 163
                                     +S V+  LH                        T
Sbjct: 114 GLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLART 173

Query: 164 QFAAYFADGTFCVERNRLYCLQ-------------------------------------- 201
           QFAAYFADGT CV RNR   ++                                      
Sbjct: 174 QFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGV 233

[Close]
BLAST of Carg04546 vs. ExPASy TrEMBL
Match: A0A6J1JY31 (RNA pseudouridine synthase 5 OS=Cucurbita maxima OX=3661 GN=LOC111489868 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 84/319 (26.33%), Postives = 106/319 (33.23%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYEDVE-------- 103
           +RIQNEQ               +I S+VVYRR PWKE DTP L E+LYED E        
Sbjct: 54  QRIQNEQITIDGQVITDPETILRIGSEVVYRRFPWKEPDTPCLLEVLYEDDEMIALNKPS 113

Query: 104 ------------------------TNASPVTLMLH------------------------T 163
                                     +S V+  LH                        T
Sbjct: 114 GLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLART 173

Query: 164 QFAAYFADGTFCVERNRLYCLQ-------------------------------------- 201
           QFAAYFADGT CV R+R   ++                                      
Sbjct: 174 QFAAYFADGTSCVGRSRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGV 233

[Close]
BLAST of Carg04546 vs. ExPASy TrEMBL
Match: A0A1S3CPT2 (RNA pseudouridine synthase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503310 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 80/293 (27.30%), Postives = 93/293 (31.74%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYEDVETNA----- 103
           +RI+NEQ               +I S++VYRRLPWKE DTP+  EILYED E  A     
Sbjct: 55  QRIKNEQITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPS 114

Query: 104 ----------------------------------SPV-----------------TLMLHT 163
                                              PV                 T +  T
Sbjct: 115 GLQVLPGGVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLART 174

Query: 164 QFAAYFADGTFCVERNR------------------------------------------- 181
           QFAAYFADGT  V RN                                            
Sbjct: 175 QFAAYFADGTSSVIRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQ 234

[Close]
BLAST of Carg04546 vs. ExPASy TrEMBL
Match: A0A1S3CPE8 (RNA pseudouridine synthase 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503310 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 80/294 (27.21%), Postives = 94/294 (31.97%), Query Frame = 0 

Query: 44  KRIQNEQ---------------KICSKVVYRRLPWKESDTPYLFEILYEDVETNA----- 103
           +RI+NEQ               +I S++VYRRLPWKE DTP+  EILYED E  A     
Sbjct: 55  QRIKNEQITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPS 114

Query: 104 ----------------------------------SPV-----------------TLMLHT 163
                                              PV                 T +  T
Sbjct: 115 GLQVLPGGVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLART 174

Query: 164 QFAAYFADGTFCVERNR------------------------------------------- 182
           QFAAYFADGT  V RN                                            
Sbjct: 175 QFAAYFADGTSSVIRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQ 234

[Close]
BLAST of Carg04546 vs. TAIR 10
Match: AT3G52260.2 (Pseudouridine synthase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 54  SKVVYRRLPWKESDTPYLFEILYED 79
           SK+VY RLPWKE DTPY  E+LYED
Sbjct: 79  SKLVYSRLPWKEPDTPYSLEVLYED 103

[Close]
BLAST of Carg04546 vs. TAIR 10
Match: AT3G52260.1 (Pseudouridine synthase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 54  SKVVYRRLPWKESDTPYLFEILYED 79
           SK+VY RLPWKE DTPY  E+LYED
Sbjct: 79  SKLVYSRLPWKEPDTPYSLEVLYED 103

[Close]
BLAST of Carg04546 vs. TAIR 10
Match: AT3G52260.3 (Pseudouridine synthase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.7e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 54  SKVVYRRLPWKESDTPYLFEILYED 79
           SK+VY RLPWKE DTPY  E+LYED
Sbjct: 109 SKLVYSRLPWKEPDTPYSLEVLYED 133

The following BLAST results are available for this feature:
BLAST of Carg04546 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033008.13.5e-111100.00hypothetical protein SDJN02_07060, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6602325.17.2e-1670.67RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022133841.13.1e-1127.30RNA pseudouridine synthase 5 isoform X2 [Momordica charantia][more]
XP_022938426.15.3e-1127.27RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata] >XP_022938427.1 RNA... [more]
KAG6578753.11.2e-1026.96RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg04546 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5M7213.8e-0476.00RNA pseudouridine synthase 5 OS=Arabidopsis thaliana OX=3702 GN=At3g52260 PE=2 S... [more]
Q0DST98.5e-0463.33RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g02... [more]
BLAST of Carg04546 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BWA81.5e-1127.30RNA pseudouridine synthase 5 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1FE062.6e-1127.27RNA pseudouridine synthase 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1JY313.1e-0926.33RNA pseudouridine synthase 5 OS=Cucurbita maxima OX=3661 GN=LOC111489868 PE=4 SV... [more]
A0A1S3CPT24.1e-0927.30RNA pseudouridine synthase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503310 ... [more]
A0A1S3CPE84.1e-0927.21RNA pseudouridine synthase 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503310 ... [more]
BLAST of Carg04546 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52260.22.7e-0576.00Pseudouridine synthase family protein [more]
AT3G52260.12.7e-0576.00Pseudouridine synthase family protein [more]
AT3G52260.32.7e-0576.00Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..200
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 52..80
coord: 122..184
NoneNo IPR availablePANTHERPTHR21600:SF44RNA PSEUDOURIDINE SYNTHASE 5coord: 52..80
coord: 122..184

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04546-RACarg04546-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016070 RNA metabolic process