Carg04536 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04536
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S23
Location	Carg_Chr04: 19894870 .. 19896016 (+)
RNA-Seq Expression	Carg04536
Synteny	Carg04536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATTGTTGTTTGATATGTGTAACCGTTCAGACGGTCTGTGTTGAGGATTGAGGATTATTAGGAGTGAGTTCCACGTTGGTTAATTTAGTGGAAGATCATGAGTTTATAATTGAGGAATATTATCTCCAATAGTATGAGACCTTTTGGAAAAGCCCAAAGTAAAGCCACGAGAGCTTATGTTCAAAGTGGACAATATCATATCATTGTGGAGAGTCGTGATTCCTAACATAATATGAGTTTTGCAGGAAGACTCGTGGAATGGGAAGACTCGTGGAATGGGAGCGGGTCGTAAGTTGAAGTCCCACCGTCGGAGGCAGAGGTGGGCCGATAAGGCGTATAAGAAGTCCCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCGAAAAGATGTAAGGTTATATATTATTGGATCTTATGCTGCTGTCGAAGAATTGTTTATATTTACAAATTTGAATTTGCAAATGCAGTGGTATTGAAGCCAAACAGCCAAATTCTGCTATTCGAAAATGTGCTCGTGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCTTTTGTACCTAATGACGGTTGCTTAAATTACATCGAGGAAAATGTAAGTCAATCTAATTATGATCATATCATGTTTTTTCGTTGACTTTGCTTTGCTTTCTAATTTGCCTGTAAAAAACGTTTTTGAAAACTAGAAAATGACGTGGCGGATAGTTTTTTTTATTTTTTATTTTTTCAGTCATAAAAATGTTTCTAAATTTATAAGTAACAAAATTTTCGAAAATAGGTGTCTGCTTTCAAAGTTCTTCCACTTATCTTCAAAACTTTTATTTATCGACTTTATTCCTATAATTTTTAATTTAAAAAAAAAAAAAAAAACAATGTATGCCTTTTATGATATAAAAAGTAGAATAATTTGATAGTGTTATTTTGTCTTATGTTTGAAAATTAAATAAGGTTGTTTATTTTAACACGTTTTAGTTATGTTATATTACAGGACGAAGTATTGATCGCGGGGTTTGGACGGAAGGGTCATGCCGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTGAAGGTTTCTGGAGTTTCGCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCAAGGTCCTAG

mRNA sequence

ATGGCCAATTGTTGTTTGATATGTGTAACCGTTCAGACGGAAGACTCGTGGAATGGGAAGACTCGTGGAATGGGAGCGGGTCGTAAGTTGAAGTCCCACCGTCGGAGGCAGAGGTGGGCCGATAAGGCGTATAAGAAGTCCCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGTGGTATTGAAGCCAAACAGCCAAATTCTGCTATTCGAAAATGTGCTCGTGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCTTTTGTACCTAATGACGGTTGCTTAAATTACATCGAGGAAAATGACGAAGTATTGATCGCGGGGTTTGGACGGAAGGGTCATGCCGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTGAAGGTTTCTGGAGTTTCGCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCAAGGTCCTAG

Coding sequence (CDS)

ATGGCCAATTGTTGTTTGATATGTGTAACCGTTCAGACGGAAGACTCGTGGAATGGGAAGACTCGTGGAATGGGAGCGGGTCGTAAGTTGAAGTCCCACCGTCGGAGGCAGAGGTGGGCCGATAAGGCGTATAAGAAGTCCCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGTGGTATTGAAGCCAAACAGCCAAATTCTGCTATTCGAAAATGTGCTCGTGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCTTTTGTACCTAATGACGGTTGCTTAAATTACATCGAGGAAAATGACGAAGTATTGATCGCGGGGTTTGGACGGAAGGGTCATGCCGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTGAAGGTTTCTGGAGTTTCGCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCAAGGTCCTAG

Protein sequence

MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Homology

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BLAST of Carg04536 vs. NCBI nr
Match: KAG7033018.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGG 60
           MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGG
Sbjct: 1   MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGG 60

Query: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120
           IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP
Sbjct: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120

Query: 121 GVRFKVVKVSGVSLLALFKEKKEKPRS 148
           GVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 GVRFKVVKVSGVSLLALFKEKKEKPRS 147

[Close]

BLAST of Carg04536 vs. NCBI nr
Match: KAG6596454.1 (Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 607 GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 666

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 667 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 726

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 727 VKVSGVSLLALFKEKKEKPRS 747

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BLAST of Carg04536 vs. NCBI nr
Match: XP_004137806.1 (40S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protein S23 [Cucumis sativus] >XP_004149560.1 40S ribosomal protein S23 [Cucumis sativus] >XP_008442648.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463567.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463898.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_010244979.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_010253521.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_011077380.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094704.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094750.1 40S ribosomal protein S23 [Sesamum indicum] >XP_015871640.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_015874365.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_019159119.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_019199308.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_022146292.1 40S ribosomal protein S23 [Momordica charantia] >XP_022846964.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022860588.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022868249.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022893103.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022923344.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022944535.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022951215.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022985542.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_022990481.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023005893.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023512024.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_023538819.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_028112674.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_028118234.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_031111005.1 40S ribosomal protein S23 [Ipomoea triloba] >XP_038890679.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038900543.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038903484.1 40S ribosomal protein S23 [Benincasa hispida] >KAG6602334.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010604.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG8376519.1 hypothetical protein BUALT_Bualt09G0071800 [Buddleja alternifolia] >PIN05081.1 40S ribosomal protein S23 [Handroanthus impetiginosus] >CAA3000695.1 40S ribosomal S23 [Olea europaea subsp. europaea] >GFZ11112.1 ribosomal protein S12/S23 family protein [Actinidia rufa])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. NCBI nr
Match: XP_022888598.1 (40S ribosomal protein S23-like [Olea europaea var. sylvestris])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKTGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. NCBI nr
Match: PHU06613.1 (40S ribosomal protein S23 [Capsicum chinense])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 132/159 (83.02%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG- 60
           M N C++      + S  GKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAG 
Sbjct: 1   MGNLCMM------DLSGCGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGS 60

Query: 61  -----------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 120
                      GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG
Sbjct: 61  SHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAG 120

Query: 121 FGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 148
           FGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 FGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 153

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BLAST of Carg04536 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.9e-65
Identity = 126/141 (89.36%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.1e-64
Identity = 125/141 (88.65%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-62
Identity = 124/141 (87.94%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 8.1e-60
Identity = 121/141 (85.82%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA             GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.3e-53
Identity = 105/142 (73.94%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAG------------GIEAKQ 78
           GK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G            G+EAKQ
Sbjct: 2   GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQ 61

Query: 79  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 138
           PNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 139 VVKVSGVSLLALFKEKKEKPRS 148
           VVKV+ VSLLAL+K+KKE+PRS
Sbjct: 122 VVKVASVSLLALYKQKKERPRS 143

[Close]

BLAST of Carg04536 vs. ExPASy TrEMBL
Match: A0A6J1JN26 (40S ribosomal protein S23-like OS=Cucurbita maxima OX=3661 GN=LOC111487330 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy TrEMBL
Match: A0A2G9GIG2 (40S ribosomal protein S23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08850 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy TrEMBL
Match: A0A6I9T358 (40S ribosomal protein S23 OS=Sesamum indicum OX=4182 GN=LOC105161405 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy TrEMBL
Match: A0A0A0KCM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496500 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. ExPASy TrEMBL
Match: A0A1S3B6Y1 (40S ribosomal protein S23 OS=Cucumis melo OX=3656 GN=LOC103486454 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 129/141 (91.49%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-63
Identity = 124/141 (87.94%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAG            GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 231.1 bits (588), Expect = 5.7e-61
Identity = 121/141 (85.82%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 19  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQP 78
           GKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA             GIEAKQP
Sbjct: 2   GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQP 61

Query: 79  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 138
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 62  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121

Query: 139 VKVSGVSLLALFKEKKEKPRS 148
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Carg04536 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120
           I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+P
Sbjct: 40  ITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HNLQEHSVVLV-----RGGRVKDLP 99

Query: 121 GVRFKVVK 129
           GVR+ +V+
Sbjct: 100 GVRYHIVR 99

[Close]

BLAST of Carg04536 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120
           I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+P
Sbjct: 40  ITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HNLQEHSVVLV-----RGGRVKDLP 99

Query: 121 GVRFKVVK 129
           GVR+ +V+
Sbjct: 100 GVRYHIVR 99

[Close]

BLAST of Carg04536 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 61  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 120
           I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+P
Sbjct: 40  ITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HNLQEHSVVLV-----RGGRVKDLP 99

Query: 121 GVRFKVVK 129
           GVR+ +V+
Sbjct: 100 GVRYHIVR 99

The following BLAST results are available for this feature:

BLAST of Carg04536 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033018.1	1.7e-78	100.00	40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596454.1	1.5e-63	91.49	Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argy...	[more]
XP_004137806.1	1.5e-63	91.49	40S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protei...	[more]
XP_022888598.1	1.5e-63	91.49	40S ribosomal protein S23-like [Olea europaea var. sylvestris]	[more]
PHU06613.1	1.5e-63	83.02	40S ribosomal protein S23 [Capsicum chinense]	[more]

BLAST of Carg04536 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46297	4.9e-65	89.36	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
Q9M5Z9	4.1e-64	88.65	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P49201	1.7e-62	87.94	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	8.1e-60	85.82	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
Q9GRJ3	7.3e-53	73.94	40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1	[more]

BLAST of Carg04536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN26	7.3e-64	91.49	40S ribosomal protein S23-like OS=Cucurbita maxima OX=3661 GN=LOC111487330 PE=3 ...	[more]
A0A2G9GIG2	7.3e-64	91.49	40S ribosomal protein S23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08850...	[more]
A0A6I9T358	7.3e-64	91.49	40S ribosomal protein S23 OS=Sesamum indicum OX=4182 GN=LOC105161405 PE=3 SV=1	[more]
A0A0A0KCM2	7.3e-64	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496500 PE=3 SV=1	[more]
A0A1S3B6Y1	7.3e-64	91.49	40S ribosomal protein S23 OS=Cucumis melo OX=3656 GN=LOC103486454 PE=3 SV=1	[more]

BLAST of Carg04536 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	1.2e-63	87.94	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	5.7e-61	85.82	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	6.9e-06	41.18	ribosomal protein S12A	[more]
ATCG01230.1	6.9e-06	41.18	ribosomal protein S12B	[more]
ATCG00905.1	6.9e-06	41.18	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 42..147 e-value: 1.3E-37 score: 129.8
None	No IPR available	PANTHER	PTHR11652:SF59	BNACNNG03140D PROTEIN	coord: 17..147
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 60..146 e-value: 9.6E-42 score: 141.2
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 17..147
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 64..71
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	CDD	cd03367	Ribosomal_S23	coord: 43..144 e-value: 2.01674E-64 score: 190.558
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 37..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04536-RA	Carg04536-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome