Carg04516 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04516
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionOxoglutarate dehydrogenase (succinyl-transferring)
LocationCarg_Chr04: 20046823 .. 20050342 (-)
RNA-Seq ExpressionCarg04516
SyntenyCarg04516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAATCAAGAGCTCAAGGCTCTCCAGGTCCACGTCTTGTTCCTCTTTCTAGGCTTACTGATAGCTTCTTAGATATAACTAACAGTGTCTACTTGGAGGAAGGTCAAAGAGCTTGGGATGCTGATACTACTAGTGTTGATGAGTCATGGGATAGTTTCTCAAGAGAGTATGCGTTTATTGTTGATTGTGAGAGTATATCAGGTTAATGGTCACATGAAATCCAAGTTGGATCCCTTGGGATTGGAAGAAAGGAAAATTCCTGATGAGTTGGACCTTGCACATAATGGATTCTCGGAAGCTGATCTTGATCGGAATTTTTTTTGGGGGGTGTGGAAAATGTCCGGATTTCTGTCTGAGAGCCGTCCCACTCAGACCCTCAGATCCGTTTTGATCCGTCTTGAGCATGTATATAGTTAGTGAAAGGTAACCATGCCAGACTAAGTAGACAGAATGTTGAAAGAGGCACCTTCAGCCATAGACACACAGTTCTTCAGCCATAGACACACAGTACTGTCCTCTTGATCATGTTATCAACAGGTAATGGAAAAGATATTTACATATTTCACAAGCCATTTCTTTTGCGTTTCCATTTATCATCGATGACAATGCTCCTGCCTGATGCTCCATTTTTGAGCTTGACTTGTGGCTGAAATATGTTCATTGCTTGTTGTGATGGAATGAATACCAAGAAATTCTTGCCTTGTATTTTGTTTATTGCAATATAGAATTTTACATTACTATGATAGACTAAAGAGTATTGTCCTACCGGGGGATATCCTTCTCGTTGTATTCTTGGTTTATGCATTTTGTAAATTTCCTAGCGCTAGTTTGCTGTCCTTTCTCACATTCCAATCCTGTCTGCAGCTCTCTTTCAAGTTTGGTGTTCTTGGATTTGAGTTGGTTATTTAATGGATAACCCCAACGCAATGGTAATGTAGGAAGCTCAATTTGGTGATTATGCTTATGGGGCTCAGGTATATTTGATCAGTTCTTAATTAGAGGAGAATCAAAGTGGCTGCGACAAACAGGACTTGTGGTGTTGGCAAGATTGGAGCGTTTTCTTCAGGTATTTCGTTAAAGAATTTCCTTTCCTCTTTACTTCCAGATCAGCACAATCTCTATCCATATTTTTTCTTTCTACTTTACTATTGCGATTGTTGTGAGAATCACCTTCTTTTATGTATGAAAGGTTAACTTGGTGCTTGTGACCTTCCAATATTTTTAATTGTTTTACCCTTTCTAATTATATAAAAGTCTGTTGTGCTTCCCCTCTCTCTTTTTCAGTTGGCAATTGGCTTGCTGAGTCACTGAAATTTTATGTTCTTCGTGGTTAAAATAGTGCACTGAGATTTTTCGTTTTGGAGTTCTGAAAAATTAGCTTATCTTTTATTACCTCATTGGTGTATTCTTAATTAGGAACCTGCATTTTGGGAGTTGAGTTGGTTTAATTTGGATATTTGGCTGATATAGATTTCATTGAACATTGTGCCAGAAGAGTGATGACAACCCTTTGCTTACACCTGAGATGGATTCTACTCTTAGGAAGCAAATTCAAGAATGCAATTGGCAAGTTGTGAATGCTTCAACTTCAGTTAATTACTTCGATGTTCTGAGGCGTCAAGTGAGTTAATTAATAAGTTATTAAAAAAATTCAAATTTTCTTGAATTGACTTGTTCAGCTGAAACTTTATTCAATTTTACGCTCTATCTCCAGATTCACAGGGAATTTTGAAAACCTCTCATTGTGATGTCTCCCCAGAAACCTTCTTCATCATAAAGATTGTAGATACAATCTATCTTAGTTTGATGATGTAAGAAACCACTCAGGTTTTGACAAGCAGGGGACTAGATTTAAGCGCTTATCAAGGACCAAAATCTGCACTCTGATCGTCAAGAAGGTAACGGGCGTTTGATACTTTGCTCTGGGAAGGCATGCTACATATTTGATGCTTATTTACTTTCAAGTATTACTCAATGGCTTCTTATCGTTGGTAACTTCTAAAGGGAAAAAAATTACTTGTTGAAAACACAGACAAATGGTGACTCCAATATACATGTTACTTGGAAACTGAGACTTACATTAGTAGTTCTTCAGTTGTGACCCTATCACGTCTCCCCATTGAAGTCCCTCCGAATTCCTTTAGTAAGCAATTCACAACAAATCCAACGATTAAATGTAAACATTATATTGTCCTAAAACCTGTAATTTCTATGCATTTTTTCTGCATATCACGTCTCCCCATTGAAGTCCCTCCGAATTCCTTTAGTAAGCAATTCACAACAAATCCAACGATTAAATGTAAACATTATATTGTCCTAAAACCTGTAATTTCTATGCATTTTTTCTGCATATGTTTCTGTTGAGTAACTTGTTATGGGAGGCTGTATGCAGTCTCGGTGCATTCTGCTCAATGCAATAAAATTACTGATCAATGTAAATTTGTTAGAAAATAATTCTCATTCTTAGCCGTTCTCACCAAAAGTTATAATTTGTACCTGCTGTTCGGATTTCTTGACAAACAAAAATTATATTCTCATATTCTGATTTGCATCTGCTGTTTGGATACTACAACTTGTTTTATCTCTCATATTCTTGAAAGCAGTGCTGAGGTAAGACTTCTTTTTTTGAATTTATTTTGCAGATGCAGACCCACTTCCATTACTTAATGTTGTTTTTCATGCACTTTATCAGGGCTATCTGTCGTTTTCATCCACACAAAATACCTACCTGTTAATTGTAATGGGATGATTTGATAATGATGTTTTGTTATCTACAGGTCCATTTAGAGAGTCTGAGATGGATTGCAATTATAAAGGCCTTCTACGCTTTCATCAGAATTGGAATTTCCACAGAATGCCTGAGGAATCACACGTCCCCTTGTGGAAGCTGAGAGGGATTGCATTTTTAATTTTCAATGCTCATATTTTCATTTTCTCCTCTCTTTAATTAGGTGATAAATAGAAATGAACTGTATCTGTTCTCTTATTATATTGATTTTTTGACTTCGCCAGAAATTTCTGATTCCACAGCGGCACTTTCTCCACTCAAAGGCTAATTTGGGATCAACTTGCACTGTAAGTATAAAGAATCTTCATGTCTGTAATATTTATGTTCTCACACTAAGCCAAAAGGAAAATTGCTTGCTTCACTGTAGAAGATGATCTTTCACTTCACCTATTGCCCTGCTACTGTTCTTTGTTGGGGGGGTTTTGTGATCTTATATTGTAGAGTATCCATTTATTTATAATCTATAATATTGGAGCATCTTGTTTGTTTATTTTTAAACTTCAAAAAAGTTTTATCATGTCACCCAATTTTGAATTATTATTTTATTGATTAGACCGTGAGGAAATGGATTAGTATGGTTTCTTTAACATACTATAGTTTTCCACCAAACTATTTGCCCATTTTTATCTTAAAAAATGAAAAATTGCAGGAAATGATGATATACTAAATGATTTTTTTAATAATTTTATTTTAAAGTAGAATTGCAGGAGATAATGGCAGTGTGGATGCAT

mRNA sequence

TTCAAATCAAGAGCTCAAGGCTCTCCAGGTCCACGTCTTGTTCCTCTTTCTAGGCTTACTGATAGCTTCTTAGATATAACTAACAGTGTCTACTTGGAGGAAGGTCAAAGAGCTTGGGATGCTGATACTACTAGTGTTGATGAGTCATGGGATAGTTTCTCAAGAGAGTATGCGTTTATTGTTGATTGTGAGAGTATATCAGGTATATTTGATCAGTTCTTAATTAGAGGAGAATCAAAGTGGCTGCGACAAACAGGACTTGTGGTGTTGGCAAGATTGGAGCGTTTTCTTCAGAAGAGTGATGACAACCCTTTGCTTACACCTGAGATGGATTCTACTCTTAGGAAGCAAATTCAAGAATGCAATTGGCAAGTTGTGAATGCTTCAACTTCAGTTAATTACTTCGATGTTCTGAGGCGTCAATTTGATGATGTAAGAAACCACTCAGGTTTTGACAAGCAGGGGACTAGATTTAAGCGCTTATCAAGGACCAAAATCTGCACTCTGATCGTCAAGAAGGTCCATTTAGAGAGTCTGAGATGGATTGCAATTATAAAGGCCTTCTACGCTTTCATCAGAATTGGAATTTCCACAGAATGCCTGAGGAATCACACGTCCCCTTGTGGAAGCTGAGAGGGATTGCATTTTTAATTTTCAATGCTCATATTTTCATTTTCTCCTCTCTTTAATTAGGTGATAAATAGAAATGAACTGTATCTGTTCTCTTATTATATTGATTTTTTGACTTCGCCAGAAATTTCTGATTCCACAGCGGCACTTTCTCCACTCAAAGGCTAATTTGGGATCAACTTGCACTAATTGCAGGAGATAATGGCAGTGTGGATGCAT

Coding sequence (CDS)

TTCAAATCAAGAGCTCAAGGCTCTCCAGGTCCACGTCTTGTTCCTCTTTCTAGGCTTACTGATAGCTTCTTAGATATAACTAACAGTGTCTACTTGGAGGAAGGTCAAAGAGCTTGGGATGCTGATACTACTAGTGTTGATGAGTCATGGGATAGTTTCTCAAGAGAGTATGCGTTTATTGTTGATTGTGAGAGTATATCAGGTATATTTGATCAGTTCTTAATTAGAGGAGAATCAAAGTGGCTGCGACAAACAGGACTTGTGGTGTTGGCAAGATTGGAGCGTTTTCTTCAGAAGAGTGATGACAACCCTTTGCTTACACCTGAGATGGATTCTACTCTTAGGAAGCAAATTCAAGAATGCAATTGGCAAGTTGTGAATGCTTCAACTTCAGTTAATTACTTCGATGTTCTGAGGCGTCAATTTGATGATGTAAGAAACCACTCAGGTTTTGACAAGCAGGGGACTAGATTTAAGCGCTTATCAAGGACCAAAATCTGCACTCTGATCGTCAAGAAGGTCCATTTAGAGAGTCTGAGATGGATTGCAATTATAAAGGCCTTCTACGCTTTCATCAGAATTGGAATTTCCACAGAATGCCTGAGGAATCACACGTCCCCTTGTGGAAGCTGA

Protein sequence

FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFIVDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQECNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLRWIAIIKAFYAFIRIGISTECLRNHTSPCGS
Homology
[Close]
BLAST of Carg04516 vs. NCBI nr
Match: KAG7033037.1 (2-oxoglutarate dehydrogenase, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 427.2 bits (1097), Expect = 8.4e-116
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 1   FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFI 60
           FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFI
Sbjct: 1   FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFI 60

Query: 61  VDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQE 120
           VDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQE
Sbjct: 61  VDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQE 120

Query: 121 CNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLR 180
           CNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLR
Sbjct: 121 CNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLR 180

Query: 181 WIAIIKAFYAFIRIGISTECLRNHTSPCGS 211
           WIAIIKAFYAFIRIGISTECLRNHTSPCGS
Sbjct: 181 WIAIIKAFYAFIRIGISTECLRNHTSPCGS 210

[Close]
BLAST of Carg04516 vs. NCBI nr
Match: KAG6602359.1 (40S ribosomal protein S15a-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423.7 bits (1088), Expect = 9.2e-115
Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 0 

Query: 1   FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFI 60
           FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEE QRAWDADTTSVDESWDSFSREYAFI
Sbjct: 197 FKSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEVQRAWDADTTSVDESWDSFSREYAFI 256

Query: 61  VDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQE 120
           VDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQE
Sbjct: 257 VDCESISGIFDQFLIRGESKWLRQTGLVVLARLERFLQKSDDNPLLTPEMDSTLRKQIQE 316

Query: 121 CNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLR 180
           CNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLR
Sbjct: 317 CNWQVVNASTSVNYFDVLRRQFDDVRNHSGFDKQGTRFKRLSRTKICTLIVKKVHLESLR 376

Query: 181 WIAIIKAFYAFIRIGISTECLRNHTSPCGS 211
           WIAIIKAFYAFIRIGISTECLRNHTSPCGS
Sbjct: 377 WIAIIKAFYAFIRIGISTECLRNHTSPCGS 406

[Close]
BLAST of Carg04516 vs. NCBI nr
Match: KAE9450982.1 (hypothetical protein C3L33_17148, partial [Rhododendron williamsianum])

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-31
Identity = 80/137 (58.39%), Postives = 91/137 (66.42%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQF+  GE+KWLRQTGLVVL              ARLERFLQ SDDNP + PEMD TL
Sbjct: 440 IFDQFVSSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTL 499

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ--------------FDDVRNHSGFDKQGTRFKR 178
           RKQIQECNWQVVNA+T  NYF VLRRQ              FDDV+ H GFDKQGTRFKR
Sbjct: 500 RKQIQECNWQVVNATTPANYFHVLRRQNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR 559

[Close]
BLAST of Carg04516 vs. NCBI nr
Match: KAE9450982.1 (hypothetical protein C3L33_17148, partial [Rhododendron williamsianum])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 2   KSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFIV 61
           KS+AQ SP PR VPLS+LTDSFLD T+SVYLEE QRAW+ D  SVDESWD+F R   F+ 
Sbjct: 45  KSKAQASPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEEDPNSVDESWDNFFRN--FVG 104

Query: 62  DCESISGIFDQ 73
              ++ GI  Q
Sbjct: 105 QAATLPGISGQ 113


HSP 2 Score: 139.8 bits (351), Expect = 2.7e-29
Identity = 79/136 (58.09%), Postives = 82/136 (60.29%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQFL  GESKWLRQTGLVVL              ARLERFLQ SDDNP + PEMDSTL
Sbjct: 743 IFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDSTL 802

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 803 RKQIQECNWQVVNVTTPANYFHVLRRQINREFRKPLIVMSPKNLLRHKDCKSNLSEFDDV 862

[Close]
BLAST of Carg04516 vs. NCBI nr
Match: XP_006848592.1 (2-oxoglutarate dehydrogenase, mitochondrial [Amborella trichopoda] >XP_020525620.1 2-oxoglutarate dehydrogenase, mitochondrial [Amborella trichopoda] >ERN10173.1 hypothetical protein AMTR_s00168p00055310 [Amborella trichopoda])

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-12
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 2  KSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREY 58
          +S+AQ +P PR VPLS+LTDSFLD T+SVYLEE QRAW+AD  SVDESWD+F R +
Sbjct: 44 RSQAQAAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPESVDESWDNFFRNF 99


HSP 2 Score: 139.4 bits (350), Expect = 3.5e-29
Identity = 79/136 (58.09%), Postives = 82/136 (60.29%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQFL  GESKWLRQTGLVVL              ARLERFLQ SDDNP + PEMDSTL
Sbjct: 749 IFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTL 808

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 809 RKQIQECNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMAPKNLLRHKDCKSNLSEFDDV 868

[Close]
BLAST of Carg04516 vs. ExPASy Swiss-Prot
Match: Q54JE4 (2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=ogdh PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-13
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           I DQF+  GE KW+RQ+GL +L               R+ER+LQ  D +P   P  +   
Sbjct: 749 IIDQFISSGEQKWMRQSGLTMLLPHGYDGAGPEHSSCRIERYLQLCDSDPNKIPPKEEAE 808

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ 142
           RKQ Q CN QV+N ST VNYF  LRRQ
Sbjct: 809 RKQSQHCNMQVLNCSTPVNYFHALRRQ 835

[Close]
BLAST of Carg04516 vs. ExPASy Swiss-Prot
Match: Q60HE2 (2-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis OX=9541 GN=OGDH PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           I DQF+  G++KW+RQ G+V+L              AR ERFLQ  +D+P + P++    
Sbjct: 757 IIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEAN 816

Query: 129 --RKQIQECNWQVVNASTSVNYFDVLRRQ 142
               Q+ +CNW VVN ST  N+F VLRRQ
Sbjct: 817 FDINQLHDCNWVVVNCSTPGNFFHVLRRQ 845

[Close]
BLAST of Carg04516 vs. ExPASy Swiss-Prot
Match: Q148N0 (2-oxoglutarate dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=OGDH PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           I DQF+  G++KW+RQ G+V+L              AR ERFLQ  +D+P + P++    
Sbjct: 757 IIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEAN 816

Query: 129 --RKQIQECNWQVVNASTSVNYFDVLRRQ 142
               Q+ +CNW VVN ST  N+F VLRRQ
Sbjct: 817 FDINQLYDCNWVVVNCSTPGNFFHVLRRQ 845

[Close]
BLAST of Carg04516 vs. ExPASy Swiss-Prot
Match: Q02218 (2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=OGDH PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           I DQF+  G++KW+RQ G+V+L              AR ERFLQ  +D+P + P++    
Sbjct: 757 IIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEAN 816

Query: 129 --RKQIQECNWQVVNASTSVNYFDVLRRQ 142
               Q+ +CNW VVN ST  N+F VLRRQ
Sbjct: 817 FDINQLYDCNWVVVNCSTPGNFFHVLRRQ 845

[Close]
BLAST of Carg04516 vs. ExPASy Swiss-Prot
Match: Q60597 (2-oxoglutarate dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ogdh PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 0 

Query: 50  WDSFSREYAFIVDCESISGIFDQFLIRGESKWLRQTGLVVL--------------ARLER 109
           W++   ++  +  C     I DQF+  G++KW+RQ G+V+L              AR ER
Sbjct: 743 WEAQFGDFNNMAQC-----IIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPER 802

Query: 110 FLQKSDDNPLLTPEM--DSTLRKQIQECNWQVVNASTSVNYFDVLRRQ 142
           FLQ  +D+P + P++  ++    Q+ +CNW VVN ST  N+F VLRRQ
Sbjct: 803 FLQMCNDDPDVLPDLQEENFDINQLYDCNWIVVNCSTPGNFFHVLRRQ 845

[Close]
BLAST of Carg04516 vs. ExPASy TrEMBL
Match: A0A6A4L0F3 (Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_17148 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 80/137 (58.39%), Postives = 91/137 (66.42%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQF+  GE+KWLRQTGLVVL              ARLERFLQ SDDNP + PEMD TL
Sbjct: 440 IFDQFVSSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTL 499

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ--------------FDDVRNHSGFDKQGTRFKR 178
           RKQIQECNWQVVNA+T  NYF VLRRQ              FDDV+ H GFDKQGTRFKR
Sbjct: 500 RKQIQECNWQVVNATTPANYFHVLRRQNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR 559

[Close]
BLAST of Carg04516 vs. ExPASy TrEMBL
Match: A0A6A4L0F3 (Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_17148 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.4e-13
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 2   KSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREYAFIV 61
           KS+AQ SP PR VPLS+LTDSFLD T+SVYLEE QRAW+ D  SVDESWD+F R   F+ 
Sbjct: 45  KSKAQASPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEEDPNSVDESWDNFFRN--FVG 104

Query: 62  DCESISGIFDQ 73
              ++ GI  Q
Sbjct: 105 QAATLPGISGQ 113


HSP 2 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 79/136 (58.09%), Postives = 82/136 (60.29%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQFL  GESKWLRQTGLVVL              ARLERFLQ SDDNP + PEMDSTL
Sbjct: 743 IFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDSTL 802

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 803 RKQIQECNWQVVNVTTPANYFHVLRRQINREFRKPLIVMSPKNLLRHKDCKSNLSEFDDV 862

[Close]
BLAST of Carg04516 vs. ExPASy TrEMBL
Match: W1PQ54 (Oxoglutarate dehydrogenase (succinyl-transferring) OS=Amborella trichopoda OX=13333 GN=AMTR_s00168p00055310 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 2  KSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREY 58
          +S+AQ +P PR VPLS+LTDSFLD T+SVYLEE QRAW+AD  SVDESWD+F R +
Sbjct: 44 RSQAQAAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPESVDESWDNFFRNF 99


HSP 2 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 79/136 (58.09%), Postives = 82/136 (60.29%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQFL  GESKWLRQTGLVVL              ARLERFLQ SDDNP + PEMDSTL
Sbjct: 749 IFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTL 808

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 809 RKQIQECNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMAPKNLLRHKDCKSNLSEFDDV 868

[Close]
BLAST of Carg04516 vs. ExPASy TrEMBL
Match: A0A2G5D623 (Oxoglutarate dehydrogenase (succinyl-transferring) OS=Aquilegia coerulea OX=218851 GN=AQUCO_02700271v1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 2   KSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREY 58
           K+++  +P PR VPLS+LTDSFLD ++SVYLEE QRAW+AD  SVDESWD+F R +
Sbjct: 51  KAQSATAPIPRAVPLSKLTDSFLDGSSSVYLEELQRAWEADPNSVDESWDNFFRNF 106


HSP 2 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 79/136 (58.09%), Postives = 82/136 (60.29%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQFL  GESKWLRQTGLVVL              ARLERFLQ SDDNP + PEMDSTL
Sbjct: 747 IFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTL 806

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 807 RKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIMMAPKNLLRHKDCKSNLSEFDDV 866

[Close]
BLAST of Carg04516 vs. ExPASy TrEMBL
Match: A0A7J6W7C0 (Oxoglutarate dehydrogenase (succinyl-transferring) OS=Thalictrum thalictroides OX=46969 GN=FRX31_018173 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 8   SPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREY 58
           +P PR VPLS+LTDSFLD ++SVYLEE QRAW+AD  SVDESWD+F R +
Sbjct: 55  APIPRAVPLSKLTDSFLDGSSSVYLEELQRAWEADPNSVDESWDNFFRNF 104


HSP 2 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 78/136 (57.35%), Postives = 83/136 (61.03%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           I+DQFL  GESKWLRQTGLVVL              ARLERFLQ SDDNP + PEMDSTL
Sbjct: 743 IYDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTL 802

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 803 RKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDCKSNLSEFDDV 862

[Close]
BLAST of Carg04516 vs. TAIR 10
Match: AT5G65750.1 (2-oxoglutarate dehydrogenase, E1 component )

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31
Identity = 74/136 (54.41%), Postives = 80/136 (58.82%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           +FDQF+  GE+KWLRQTGLVVL               RLERFLQ SDDNP + PEMD TL
Sbjct: 746 MFDQFISSGEAKWLRQTGLVVLLPHGYDGQGPEHSSGRLERFLQMSDDNPYVIPEMDPTL 805

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQVVN +T  NYF VLRRQ                             FDDV
Sbjct: 806 RKQIQECNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMAPKNLLRHKQCVSNLSEFDDV 865


HSP 2 Score: 78.2 bits (191), Expect = 8.9e-15
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 2   KSRAQ-GSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREY 58
           KS+A+  +P PR VPLS+LTDSFLD T+SVYLEE QRAW+AD  SVDESWD+F R +
Sbjct: 47  KSKAESAAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF 103

[Close]
BLAST of Carg04516 vs. TAIR 10
Match: AT3G55410.1 (2-oxoglutarate dehydrogenase, E1 component )

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 71/136 (52.21%), Postives = 82/136 (60.29%), Query Frame = 0 

Query: 69  IFDQFLIRGESKWLRQTGLVVL--------------ARLERFLQKSDDNPLLTPEMDSTL 128
           IFDQF+  GE+KWLRQTGLV+L              ARLER+LQ SDDNP + P+M+ T+
Sbjct: 742 IFDQFISSGEAKWLRQTGLVMLLPHGYDGQGPEHSSARLERYLQMSDDNPYVIPDMEPTM 801

Query: 129 RKQIQECNWQVVNASTSVNYFDVLRRQ-----------------------------FDDV 162
           RKQIQECNWQ+VNA+T  NYF VLRRQ                             FDDV
Sbjct: 802 RKQIQECNWQIVNATTPANYFHVLRRQIHRDFRKPLIVMAPKNLLRHKDCKSNLSEFDDV 861


HSP 2 Score: 81.6 bits (200), Expect = 8.0e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 2   KSRAQGSPGPRLVPLSRLTDSFLDITNSVYLEEGQRAWDADTTSVDESWDSFSREY 58
           + +AQ +P PR VPLS+LTDSFLD T+SVYLEE QRAW+AD  SVDESWD+F R +
Sbjct: 45  RPKAQSAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF 100

The following BLAST results are available for this feature:
BLAST of Carg04516 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033037.18.4e-116100.002-oxoglutarate dehydrogenase, mitochondrial, partial [Cucurbita argyrosperma sub... [more]
KAG6602359.19.2e-11599.5240S ribosomal protein S15a-1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAE9450982.12.2e-3158.39hypothetical protein C3L33_17148, partial [Rhododendron williamsianum][more]
KAE9450982.11.3e-1261.97hypothetical protein C3L33_17148, partial [Rhododendron williamsianum][more]
XP_006848592.16.6e-1269.642-oxoglutarate dehydrogenase, mitochondrial [Amborella trichopoda] >XP_020525620... [more]

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BLAST of Carg04516 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54JE43.6e-1345.982-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum OX=44689... [more]
Q60HE23.4e-1142.702-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis OX=9541 GN=OG... [more]
Q148N04.4e-1142.702-oxoglutarate dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=OGDH PE=2 S... [more]
Q022184.4e-1142.702-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=OGDH PE=1... [more]
Q605974.4e-1137.042-oxoglutarate dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ogdh PE=... [more]
BLAST of Carg04516 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A4L0F31.1e-3158.39Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) OS=Rhododendron wi... [more]
A0A6A4L0F36.4e-1361.97Oxoglutarate dehydrogenase (succinyl-transferring) (Fragment) OS=Rhododendron wi... [more]
W1PQ543.2e-1269.64Oxoglutarate dehydrogenase (succinyl-transferring) OS=Amborella trichopoda OX=13... [more]
A0A2G5D6231.0e-1064.29Oxoglutarate dehydrogenase (succinyl-transferring) OS=Aquilegia coerulea OX=2188... [more]
A0A7J6W7C03.9e-1070.00Oxoglutarate dehydrogenase (succinyl-transferring) OS=Thalictrum thalictroides O... [more]

Pages

BLAST of Carg04516 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65750.12.3e-3154.412-oxoglutarate dehydrogenase, E1 component [more]
AT3G55410.11.2e-3052.212-oxoglutarate dehydrogenase, E1 component [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0321062-oxoglutarate dehydrogenase E1 component, N-terminal domainPFAMPF160782-oxogl_dehyd_Ncoord: 21..53
e-value: 2.1E-7
score: 30.4
NoneNo IPR availableGENE3D3.40.50.12470coord: 61..149
e-value: 1.1E-10
score: 43.1
NoneNo IPR availablePANTHERPTHR23152:SF332-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT-RELATEDcoord: 2..58
coord: 68..143
IPR0116032-oxoglutarate dehydrogenase E1 componentPANTHERPTHR231522-OXOGLUTARATE DEHYDROGENASEcoord: 2..58
coord: 68..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04516-RACarg04516-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006099 tricarboxylic acid cycle
molecular_function GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity
molecular_function GO:0030976 thiamine pyrophosphate binding