Carg04506 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04506
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Geranylgeranyl transferase type I subunit beta
Location	Carg_Chr04: 20100997 .. 20102457 (-)
RNA-Seq Expression	Carg04506
Synteny	Carg04506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAAATGGCGAAGAGCCGAGAGCCAAAGACAAGTCTTTCAGTCATCTAGAAAGGTGTCGCCATGGATTCAGAGTCGAACCTGTTAGAAGAATCATCCGCTTCTTCTTCTTCTGGTTTCGATAGAGATCGCCATGTGACGTTCTTGGAGTTGATGTACCAGTTGTTACCTAGTCAGTATCAGACTCAGGAGATTAACCACCTTACACTTGCTTACTTCGTGATCTCCAGCCTTGACCTTCTTGGCGCCATGGATCGTGTGGGTACAATTTTCAATTTCTCTTTGTATCGCGTTGTTTTGATCCGAGTACACATTGAGATAGAGATTTGTGTTACGATTGAATGTTTAGTTTTCCTCCTTTCCGCTGATTTTTCATGTTGAATATCTATCCCTTTGTTTATCCCCAATGCCGACTGTGACCTTTGTTTATCCCCAATGCCGACTGTGAAATTCTTGATTTAGACTGATTAGAAATTTGAAGCTCGTAATTTTTTTTCTATCTGATTATGAATTTGACTTTTGGTAATCGGTTGCGGCTTAGAGGAACCTATGGTAATTATGCGAGCCTGTTAATTGTTTGATTATGGACATGAAAAGGTTTTGATTTTGAATTTGAGGGGTGGGGGATGTTAGGAAGATTTTCTTAGCTGCTATTCGAGTTCTTGTATCTAACTTTTGATCTAAATTGTGCATTTTTTTATTATGAGAATGAGTTTTGAACCAATTAGCTGCGGAACTCTTACAATGTTGACACTATGCTTGCTGTTATCTTGTGTCGTTTATGCACCTTTGTGCAGCTATAATCTCCATCCAAATATTGTAATGCATTGATTATTTCCACAACCACCGTATTGTGTTAAAATGCCGAAGGTTATTTGAAAAGTTAACATTAGATGTTTGAAATTCTATAGGTCGACAAGGACATCATTGCTAGTTGGGTCTTGTCCTTTCAGGCACTTCCTACAAAGAAGGCCGAAAAAACTAATGGTATGAACTTACCTTAGAAAGAAAGTGTAAAATTTATATGGAGAAAGTGCCTGGTGATTAGCTTTTGGTTTGATGCAGGAGAATTTTATGGATTCTGTGGATCAAGAAGTTCTCAGTTTCCTCCAGATGAGGATGGGGTATGATAAGACATAGTGCACAAAGCTATTGAACCTCTTGAGATAAAATATTAATGTTTATTGATATGTTTCCTTCTTGTCTCCAATATCTGCTTTCACTATTGGCACATACGCAGTTAGTGCAGTGCAAATGAGAGCCATATGTCCTCTTTTATTCTTGTAATATTTGTCTGTTTTTTCTTATAGGATTTAATTCACAACGGTAGTCACTTGGCAAGCACATACTGTGCCCTTGCAATACTGAAGGTCATTGGTTATGACTTCTCCAATATTGACTCTGAATCAATTGCAATCTCAATGAGAAACCTTCAGCAATCTGATGGAAGGTATTGTTGA

mRNA sequence

AAATAAAATGGCGAAGAGCCGAGAGCCAAAGACAAGTCTTTCAGTCATCTAGAAAGGTGTCGCCATGGATTCAGAGTCGAACCTGTTAGAAGAATCATCCGCTTCTTCTTCTTCTGGTTTCGATAGAGATCGCCATGTGACGTTCTTGGAGTTGATGTACCAGTTGTTACCTAGTCAGTATCAGACTCAGGAGATTAACCACCTTACACTTGCTTACTTCGTGATCTCCAGCCTTGACCTTCTTGGCGCCATGGATCGTGTCGACAAGGACATCATTGCTAGTTGGGTCTTGTCCTTTCAGGCACTTCCTACAAAGAAGGCCGAAAAAACTAATGGAGAATTTTATGGATTCTGTGGATCAAGAAGTTCTCAGTTTCCTCCAGATGAGGATGGGGATTTAATTCACAACGGTAGTCACTTGGCAAGCACATACTGTGCCCTTGCAATACTGAAGGTCATTGGTTATGACTTCTCCAATATTGACTCTGAATCAATTGCAATCTCAATGAGAAACCTTCAGCAATCTGATGGAAGGTATTGTTGA

Coding sequence (CDS)

ATGGATTCAGAGTCGAACCTGTTAGAAGAATCATCCGCTTCTTCTTCTTCTGGTTTCGATAGAGATCGCCATGTGACGTTCTTGGAGTTGATGTACCAGTTGTTACCTAGTCAGTATCAGACTCAGGAGATTAACCACCTTACACTTGCTTACTTCGTGATCTCCAGCCTTGACCTTCTTGGCGCCATGGATCGTGTCGACAAGGACATCATTGCTAGTTGGGTCTTGTCCTTTCAGGCACTTCCTACAAAGAAGGCCGAAAAAACTAATGGAGAATTTTATGGATTCTGTGGATCAAGAAGTTCTCAGTTTCCTCCAGATGAGGATGGGGATTTAATTCACAACGGTAGTCACTTGGCAAGCACATACTGTGCCCTTGCAATACTGAAGGTCATTGGTTATGACTTCTCCAATATTGACTCTGAATCAATTGCAATCTCAATGAGAAACCTTCAGCAATCTGATGGAAGGTATTGTTGA

Protein sequence

MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC

Homology

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BLAST of Carg04506 vs. NCBI nr
Match: KAG7033047.1 (Geranylgeranyl transferase type-1 subunit beta [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.4 bits (812), Expect = 7.1e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL 60
           MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL
Sbjct: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL 60

Query: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120
           GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA
Sbjct: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120

Query: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC 160
           STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
Sbjct: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC 159

[Close]

BLAST of Carg04506 vs. NCBI nr
Match: KAG6602367.1 (Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL 60
           MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL
Sbjct: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL 60

Query: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120
           GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA
Sbjct: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120

Query: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 158

[Close]

BLAST of Carg04506 vs. NCBI nr
Match: XP_022922585.1 (geranylgeranyl transferase type-1 subunit beta [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 7.3e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL 60
           MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLP QYQTQEINHLTLAYFVISSLDLL
Sbjct: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPIQYQTQEINHLTLAYFVISSLDLL 60

Query: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120
           GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA
Sbjct: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120

Query: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 158

[Close]

BLAST of Carg04506 vs. NCBI nr
Match: XP_023516488.1 (geranylgeranyl transferase type-1 subunit beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 153/161 (95.03%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   MDSESNLLEESSA---SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSL 60
           MDSES LLEESSA   SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSL
Sbjct: 1   MDSESKLLEESSASSSSSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSL 60

Query: 61  DLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGS 120
           DLLGAMDRVDKDI+ASWVLSFQALPTKK EKTNGEFYGFCGSRSSQFPPDEDGDLIHNGS
Sbjct: 61  DLLGAMDRVDKDIVASWVLSFQALPTKKVEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGS 120

Query: 121 HLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           HLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 HLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 161

[Close]

BLAST of Carg04506 vs. NCBI nr
Match: XP_022990858.1 (geranylgeranyl transferase type-1 subunit beta [Cucurbita maxima])

HSP 1 Score: 299.3 bits (765), Expect = 2.0e-77
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MDSESNLLEESSA--SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLD 60
           MDSESNLLEESSA  SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLD
Sbjct: 1   MDSESNLLEESSASSSSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLD 60

Query: 61  LLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSH 120
           LLGAMDRVDKD I SWVLSFQA PTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSH
Sbjct: 61  LLGAMDRVDKDSIVSWVLSFQAFPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSH 120

Query: 121 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 160

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BLAST of Carg04506 vs. ExPASy Swiss-Prot
Match: O80642 (Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana OX=3702 GN=GGB PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-53
Identity = 100/146 (68.49%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 13  ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIA 72
           +S S+ F++DRH+ +LE+MY+LLP  YQ+QEIN LTLA+F+IS L  LGA DRVDKD++A
Sbjct: 29  SSPSANFEKDRHLMYLEMMYELLPYHYQSQEINRLTLAHFIISGLHFLGARDRVDKDVVA 88

Query: 73  SWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVI 132
            WVLSFQA PT +    +GEFYGF GSRSSQFP DE+GDL HNGSHLASTYCALAILKVI
Sbjct: 89  KWVLSFQAFPTNRVSLKDGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTYCALAILKVI 148

Query: 133 GYDFSNIDSESIAISMRNLQQSDGRY 159
           G+D S IDS+S+ ISM NLQQ DG +
Sbjct: 149 GHDLSTIDSKSLLISMINLQQDDGSF 174

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BLAST of Carg04506 vs. ExPASy Swiss-Prot
Match: P53610 (Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus OX=10116 GN=Pggt1b PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 59/161 (36.65%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 3   SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGA 62
           +E + L  S       F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L +
Sbjct: 4   TEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS 63

Query: 63  MDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--SSQFPPDEDGDLIH--NGSH 122
           +D V+KD I  W+ S Q LPT+  +++N +  GF GS      F P ++    H  +  H
Sbjct: 64  LDVVNKDDIIEWIYSLQVLPTE--DRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGH 123

Query: 123 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC 160
           +A TY  L+ L ++G D S +D E+    +R LQ  DG +C
Sbjct: 124 IAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFC 162

[Close]

BLAST of Carg04506 vs. ExPASy Swiss-Prot
Match: Q5EAD5 (Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus OX=9913 GN=PGGT1B PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.7e-21
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 19  FDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSF 78
           F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L ++D V+KD I  W+ S 
Sbjct: 20  FLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSL 79

Query: 79  QALPTKKAEKTNGEFYGFCGSR--SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGY 138
           Q LPT+  +++N    GF GS      F P ++    H  +  H+A TY  L+ L ++G 
Sbjct: 80  QVLPTE--DRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGD 139

Query: 139 DFSNIDSESIAISMRNLQQSDGRYC 160
           D S ++ E+    +R LQ  DG +C
Sbjct: 140 DLSRVNKEACLAGLRALQLEDGSFC 162

[Close]

BLAST of Carg04506 vs. ExPASy Swiss-Prot
Match: Q8BUY9 (Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus OX=10090 GN=Pggt1b PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.1e-21
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 0


Query: 3   SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGA 62
           +E + L  S       F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L +
Sbjct: 4   TEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS 63

Query: 63  MDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--SSQFPPDEDGDLIH--NGSH 122
           +D V+KD I  W+ S Q LPT+  +++N    GF GS      F P ++    H  +  H
Sbjct: 64  LDVVNKDDIIEWIYSLQVLPTE--DRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGH 123

Query: 123 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC 160
           +A TY  L+ L ++G D   +D E+    +R LQ  DG +C
Sbjct: 124 IAMTYTGLSCLIILGDDLGRVDKEACLAGLRALQLEDGSFC 162

[Close]

BLAST of Carg04506 vs. ExPASy Swiss-Prot
Match: P53609 (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens OX=9606 GN=PGGT1B PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 58/161 (36.02%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 3   SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGA 62
           +E   L  S       F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L +
Sbjct: 4   TEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS 63

Query: 63  MDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--SSQFPPDEDGDLIH--NGSH 122
           +D V+KD I  W+ S Q LPT+  +++N    GF GS      F P +     H  +  H
Sbjct: 64  LDVVNKDDIIEWIYSLQVLPTE--DRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGH 123

Query: 123 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC 160
           +A TY  L+ L ++G D S ++ E+    +R LQ  DG +C
Sbjct: 124 IAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFC 162

[Close]

BLAST of Carg04506 vs. ExPASy TrEMBL
Match: A0A6J1E973 (Geranylgeranyl transferase type I subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111430546 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLL 60
           MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLP QYQTQEINHLTLAYFVISSLDLL
Sbjct: 1   MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPIQYQTQEINHLTLAYFVISSLDLL 60

Query: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120
           GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA
Sbjct: 61  GAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLA 120

Query: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 STYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 158

[Close]

BLAST of Carg04506 vs. ExPASy TrEMBL
Match: A0A6J1JUI6 (Geranylgeranyl transferase type I subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487623 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.6e-78
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MDSESNLLEESSA--SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLD 60
           MDSESNLLEESSA  SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLD
Sbjct: 1   MDSESNLLEESSASSSSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLD 60

Query: 61  LLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSH 120
           LLGAMDRVDKD I SWVLSFQA PTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSH
Sbjct: 61  LLGAMDRVDKDSIVSWVLSFQAFPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSH 120

Query: 121 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 LASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 160

[Close]

BLAST of Carg04506 vs. ExPASy TrEMBL
Match: A0A6J1C200 (Geranylgeranyl transferase type I subunit beta OS=Momordica charantia OX=3673 GN=LOC111006688 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.9e-71
Identity = 139/157 (88.54%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MDSESNLLEES-SASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDL 60
           MDSESNL EES ++SSSSGFDRDRHV FLE+MYQLLPS+YQTQEINHLTLAYFVIS LDL
Sbjct: 1   MDSESNLSEESPTSSSSSGFDRDRHVIFLEMMYQLLPSEYQTQEINHLTLAYFVISGLDL 60

Query: 61  LGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHL 120
           LG++D VDKD IASWVLSFQALPT KAEKTNG+FYGFCGSRSSQFPPDEDG L+HNGSHL
Sbjct: 61  LGSLDHVDKDKIASWVLSFQALPTNKAEKTNGKFYGFCGSRSSQFPPDEDGVLLHNGSHL 120

Query: 121 ASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG 157
           AS+YCALAILK+IGYDFSNIDSESIAISMRNLQQSDG
Sbjct: 121 ASSYCALAILKIIGYDFSNIDSESIAISMRNLQQSDG 157

[Close]

BLAST of Carg04506 vs. ExPASy TrEMBL
Match: A0A0A0KNR1 (Geranylgeranyl transferase type I subunit beta OS=Cucumis sativus OX=3659 GN=Csa_5G514460 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.5e-70
Identity = 140/162 (86.42%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MDSESNLLEESS----ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISS 60
           MDS+S LLE+SS    +SSSSGFDRDRHV FLE+MYQLLP QYQTQEINHLTLAYFVIS 
Sbjct: 1   MDSDSTLLEDSSTPSPSSSSSGFDRDRHVMFLEMMYQLLPFQYQTQEINHLTLAYFVISG 60

Query: 61  LDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNG 120
           LDLLGAMDRVDKD IA+WVLSFQALPT KAEKT GE YGFCGSRSSQFPPDE+GDLIHNG
Sbjct: 61  LDLLGAMDRVDKDKIANWVLSFQALPTNKAEKTTGELYGFCGSRSSQFPPDENGDLIHNG 120

Query: 121 SHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           SHLASTYCAL ILKVIGYDFSNI+SESIAISMRNLQQSDG +
Sbjct: 121 SHLASTYCALVILKVIGYDFSNINSESIAISMRNLQQSDGSF 162

[Close]

BLAST of Carg04506 vs. ExPASy TrEMBL
Match: A0A5A7TM93 (Geranylgeranyl transferase type I subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00260 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.8e-69
Identity = 140/167 (83.83%), Postives = 147/167 (88.02%), Query Frame = 0


Query: 1   MDSESNLLEESSA---------SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAY 60
           MDS+S+LLE+SS          SSSSGFDRDRHV FLE+MYQLLP QYQTQEINHLTLAY
Sbjct: 1   MDSDSSLLEDSSTPSPSPSPSPSSSSGFDRDRHVMFLEMMYQLLPFQYQTQEINHLTLAY 60

Query: 61  FVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGD 120
           FVIS LDLLGAMDRVDKD IA+WVLSFQALPT KAE   GEFYGFCGSRSSQFPP E+GD
Sbjct: 61  FVISGLDLLGAMDRVDKDKIANWVLSFQALPTIKAENPTGEFYGFCGSRSSQFPPGENGD 120

Query: 121 LIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY 159
           LIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Sbjct: 121 LIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGSF 167

[Close]

BLAST of Carg04506 vs. TAIR 10
Match: AT2G39550.1 (Prenyltransferase family protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-54
Identity = 100/146 (68.49%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 13  ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIA 72
           +S S+ F++DRH+ +LE+MY+LLP  YQ+QEIN LTLA+F+IS L  LGA DRVDKD++A
Sbjct: 29  SSPSANFEKDRHLMYLEMMYELLPYHYQSQEINRLTLAHFIISGLHFLGARDRVDKDVVA 88

Query: 73  SWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVI 132
            WVLSFQA PT +    +GEFYGF GSRSSQFP DE+GDL HNGSHLASTYCALAILKVI
Sbjct: 89  KWVLSFQAFPTNRVSLKDGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTYCALAILKVI 148

Query: 133 GYDFSNIDSESIAISMRNLQQSDGRY 159
           G+D S IDS+S+ ISM NLQQ DG +
Sbjct: 149 GHDLSTIDSKSLLISMINLQQDDGSF 174

The following BLAST results are available for this feature:

BLAST of Carg04506 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033047.1	7.1e-83	100.00	Geranylgeranyl transferase type-1 subunit beta [Cucurbita argyrosperma subsp. ar...	[more]
KAG6602367.1	1.5e-80	98.73	Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma ...	[more]
XP_022922585.1	7.3e-80	98.10	geranylgeranyl transferase type-1 subunit beta [Cucurbita moschata]	[more]
XP_023516488.1	1.2e-77	95.03	geranylgeranyl transferase type-1 subunit beta [Cucurbita pepo subsp. pepo]	[more]
XP_022990858.1	2.0e-77	95.63	geranylgeranyl transferase type-1 subunit beta [Cucurbita maxima]	[more]

BLAST of Carg04506 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80642	2.1e-53	68.49	Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana OX=3702 G...	[more]
P53610	1.2e-21	36.65	Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus OX=10116 GN=...	[more]
Q5EAD5	4.7e-21	37.93	Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus OX=9913 GN=PGGT1B P...	[more]
Q8BUY9	6.1e-21	36.02	Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus OX=10090 GN=Pggt1...	[more]
P53609	1.8e-20	36.02	Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens OX=9606 GN=PGGT1B...	[more]

BLAST of Carg04506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E973	3.5e-80	98.10	Geranylgeranyl transferase type I subunit beta OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JUI6	9.6e-78	95.63	Geranylgeranyl transferase type I subunit beta OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1C200	3.9e-71	88.54	Geranylgeranyl transferase type I subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0KNR1	1.5e-70	86.42	Geranylgeranyl transferase type I subunit beta OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7TM93	2.8e-69	83.83	Geranylgeranyl transferase type I subunit beta OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Carg04506 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39550.1	1.5e-54	68.49	Prenyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.20		coord: 18..159 e-value: 2.5E-31 score: 110.9
None	No IPR available	PANTHER	PTHR11774:SF4	GERANYLGERANYL TRANSFERASE TYPE-1 SUBUNIT BETA	coord: 15..157
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 15..157
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 17..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04506-RA	Carg04506-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018344	protein geranylgeranylation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009733	response to auxin
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005953	CAAX-protein geranylgeranyltransferase complex
molecular_function	GO:0004662	CAAX-protein geranylgeranyltransferase activity
molecular_function	GO:0008318	protein prenyltransferase activity