Carg04479 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04479
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mitochondrial inner membrane protease ATP23
Location	Carg_Chr04: 20229263 .. 20231906 (+)
RNA-Seq Expression	Carg04479
Synteny	Carg04479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACCCCTAAAACACATCAATTTTTAGTTCTAGACATATCAATTTTGATCGTGGCTTTATGATTTTTTAATTGAACCCGGTTTTTCCTGGTTCGAGTTAAATGAAGAACCAAAAATGCGAACCGTTGTTCATACAAAACCCCGAAATCCGCTTGGAGATAGTGCTGCAGCGACGCCGTGTTTGACACTTGAAACTAAGAATGGCGGAAGAATCCACCCCGGAACCTGGATCGAATCGCTTGTATTCTGCGGTCAACGGCGGCCGGACGAAGGAAGAATGCGAGGATATGATTCGAAGAAGTCTCCGAAGTATGAACAACAAACAAATCATTTATTTCCTGTTCTACTCGTCTCCTCAAAATTTGGAACCCGCGTATAAAATTGCAGGGTTTAGGGTTTTGCGACTTTTGTTTATTTGCTGAGAATTTGAAAATTAGAGCTTTCTTTTGTTTTTCTCGTACCTTCTTAACCGTTCTCTGCGTCTCAAATGGGTCAATGATTCTATTTCTGTGTCTCTCAGCTCCGATGGTGAAATTCTTGATGGAGCATTTGGAGAAATCTGGATGTGGGATTGGGGATAAGTTTATTAAGGCTGTTCATTGCGATAAGCAGATCAGTGGTGGCTATGTTCGTGGTGAAGGGGTAATACTCATTATACTTTCCTCTCTTTGTTTCTGCTTATGGTTTATTGATGAATTTGGATCTGGATGAGAATGTTGAAGACTGATTTATTTATTGTGTCTACTTTCTTGCTTGTAGATAATGGTGTGTAGGAATCATATGAACATTCAAGATGAGGTTAACCAAGTTGTAATTCATGAGCTTATTCATGCTTTTGATGATTGTCGTGCGGCAAACTTGGATTGGGCTAATTGTGCACATCATGCTTGCAGTGAGGTATGAATCTGCAAATAGCCATTTTTTCCCAGATTGAGTTTCTTCTGTTCTGGTCTCTAGTTTTCCTTCTGGTAATTCTCTAACACATGTATTTGGAATTTAGATTCGAGCTGGTCATCTAAGTGGTGATTGCCACTATAAACGAGAACTACTGCGAGGTTTTGTCAAATTACGAGGACACGAGCAAGTATGATTTCTAGAAAATTGTAGTTTAATTCTCTTGTTGGCATCTAAAAATGAGTATAAGTTTCATCCTTCATGTTTGAGATTTTTGAATTTCTGACATTGTTCATAGCCTCTTGCTTAAAATGGTGAAAAACATCCATGAAGTGTGCTTAGAGTAATTATATATTCTCAGCGGATCAAGGACTAATGAACATGAACCACAGGACAGTTGAAAAGTTTTAGTGCTCTCTACTGATAGATTAGTTATATGATTAACAACTTAACATGTCCCAAGTTATTGTGTTACGTTAAAGAAATTTTTTCATGATAGAATCTAAAATCTCTGTGTATGCTCATGTCAACTTGAAGCTGATCTTGGCCATGAATATAGTTGATTTAACCATTCTTTCTTGTAACTTTTCGCTGATAATCGCTCTTGGCAATGGATTTTTTTGTGCTTAAGAATTTGCTTTTCCCTTAGCCCTTTGCTAAACTAGCTTATACGTGAGCAGTGAGAGTAAAAGTTCTTCATGAAAGAAACATAATATTAGCAGAACATTTTAGGAAGGCTCTAATCTTGAATGAATGGCTGAATGAATGGCTGGCCAATATTTCTAAGAGATCTAGGTTTGTTCAACCCTGAATGGATGGCTGCAATTGGGGGCCATTGTAACTTTTCTCACAGTCCTAGGAAAACAAAAAACTCTTCTCGATGTAGATGTCGGTGAGGATATGATTGAAGGATGTAGATGTCGGTGAGGATATAATTGAAGGATGTAGATGTCGGTGAGGATATGATTGAAGGCGATGCACTAATGATTGAACAACATGTGCATGTGTGATATGATACAAACCAGCATTTCATATTCTTTTTGCCAACAATATTATTACCCTACTCTCGCTCGGATTCTTTTTCTTCTTGGTGCATTTCTGTTGGGCTCTTTAGGTTCGCTATTTGTTGACATTCTTTTCTCAATTTGTGAAGGAGTGTGTGAGAAGAAGAGTGATGAAATCAGTGATTGCTAATCCTTATTGCTCGGAAGCCGCTGCAAGGGATGCCATGGAATCTGTCTGGGATGTTTGTTACAATGATACACAACCATTTGATAGAGCTCCCTGAACAAATGGAACATTGTAATGTCCTCTACAGAGAACAAAGCAGTCACTGCTCCTATTTTAATGGTGCTGTGCCCAAAAGAGAAACAGGTTATTTTGCCCAAAATTTGGATTCCATAAACTATAGAGTAAGTTCATTGTCACGAGCAGTTCGATCAATTACACGAACGATCGATGATTTTATTCGGATATAGACATTCTCATTTTTTGCTTGCATCTGTTCCAATACCCTTTTCATATTGATAACCTTATTGTGTAATACTTCTAAATTCCCATATTAATTGGTTAGCTATGTCCGTGTGAAAACAGTATTCTCTTATTCATTTTAACCATTGTATGGATGAGATGAAGATAGTTGGAAGACAGCATAGTTTTAAGGTCCCCTCCCATTAAATCTTGTTGCTCTTGTGTCTTTCATCCTTAGTGGCAATGGCAATGGCAATGGCAAGTGGAATAAGGGTATGG

mRNA sequence

CAAAACCCCTAAAACACATCAATTTTTAGTTCTAGACATATCAATTTTGATCGTGGCTTTATGATTTTTTAATTGAACCCGGTTTTTCCTGGTTCGAGTTAAATGAAGAACCAAAAATGCGAACCGTTGTTCATACAAAACCCCGAAATCCGCTTGGAGATAGTGCTGCAGCGACGCCGTGTTTGACACTTGAAACTAAGAATGGCGGAAGAATCCACCCCGGAACCTGGATCGAATCGCTTGTATTCTGCGGTCAACGGCGGCCGGACGAAGGAAGAATGCGAGGATATGATTCGAAGAAGTCTCCGAACTCCGATGGTGAAATTCTTGATGGAGCATTTGGAGAAATCTGGATGTGGGATTGGGGATAAGTTTATTAAGGCTGTTCATTGCGATAAGCAGATCAGTGGTGGCTATGTTCGTGGTGAAGGGATAATGGTGTGTAGGAATCATATGAACATTCAAGATGAGGTTAACCAAGTTGTAATTCATGAGCTTATTCATGCTTTTGATGATTGTCGTGCGGCAAACTTGGATTGGGCTAATTGTGCACATCATGCTTGCAGTGAGATTCGAGCTGGTCATCTAAGTGGTGATTGCCACTATAAACGAGAACTACTGCGAGGTTTTGTCAAATTACGAGGACACGAGCAAGAGTGTGTGAGAAGAAGAGTGATGAAATCAGTGATTGCTAATCCTTATTGCTCGGAAGCCGCTGCAAGGGATGCCATGGAATCTGTCTGGGATGTTTGTTACAATGATACACAACCATTTGATAGAGCTCCCTGAACAAATGGAACATTGTAATGTCCTCTACAGAGAACAAAGCAGTCACTGCTCCTATTTTAATGGTGCTGTGCCCAAAAGAGAAACAGGTTATTTTGCCCAAAATTTGGATTCCATAAACTATAGAGTAAGTTCATTGTCACGAGCAGTTCGATCAATTACACGAACGATCGATGATTTTATTCGGATATAGACATTCTCATTTTTTGCTTGCATCTGTTCCAATACCCTTTTCATATTGATAACCTTATTGTGTAATACTTCTAAATTCCCATATTAATTGGTTAGCTATGTCCGTGTGAAAACAGTATTCTCTTATTCATTTTAACCATTGTATGGATGAGATGAAGATAGTTGGAAGACAGCATAGTTTTAAGGTCCCCTCCCATTAAATCTTGTTGCTCTTGTGTCTTTCATCCTTAGTGGCAATGGCAATGGCAATGGCAAGTGGAATAAGGGTATGG

Coding sequence (CDS)

ATGGCGGAAGAATCCACCCCGGAACCTGGATCGAATCGCTTGTATTCTGCGGTCAACGGCGGCCGGACGAAGGAAGAATGCGAGGATATGATTCGAAGAAGTCTCCGAACTCCGATGGTGAAATTCTTGATGGAGCATTTGGAGAAATCTGGATGTGGGATTGGGGATAAGTTTATTAAGGCTGTTCATTGCGATAAGCAGATCAGTGGTGGCTATGTTCGTGGTGAAGGGATAATGGTGTGTAGGAATCATATGAACATTCAAGATGAGGTTAACCAAGTTGTAATTCATGAGCTTATTCATGCTTTTGATGATTGTCGTGCGGCAAACTTGGATTGGGCTAATTGTGCACATCATGCTTGCAGTGAGATTCGAGCTGGTCATCTAAGTGGTGATTGCCACTATAAACGAGAACTACTGCGAGGTTTTGTCAAATTACGAGGACACGAGCAAGAGTGTGTGAGAAGAAGAGTGATGAAATCAGTGATTGCTAATCCTTATTGCTCGGAAGCCGCTGCAAGGGATGCCATGGAATCTGTCTGGGATGTTTGTTACAATGATACACAACCATTTGATAGAGCTCCCTGA

Protein sequence

MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIKAVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESVWDVCYNDTQPFDRAP

Homology

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BLAST of Carg04479 vs. NCBI nr
Match: XP_022922282.1 (mitochondrial inner membrane protease ATP23 [Cucurbita moschata] >XP_022990978.1 mitochondrial inner membrane protease ATP23 [Cucurbita maxima] >XP_023526059.1 mitochondrial inner membrane protease ATP23 [Cucurbita pepo subsp. pepo] >KAG6602399.1 hypothetical protein SDJN03_07632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033074.1 ATP23 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 413.7 bits (1062), Expect = 8.9e-112
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK
Sbjct: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

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BLAST of Carg04479 vs. NCBI nr
Match: XP_038890541.1 (mitochondrial inner membrane protease ATP23 [Benincasa hispida])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNR YSAVNGGRTKEECEDMIRRS RTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRSYSAVNGGRTKEECEDMIRRSFRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKSVIANPYCSEAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

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BLAST of Carg04479 vs. NCBI nr
Match: XP_022133506.1 (mitochondrial inner membrane protease ATP23 [Momordica charantia])

HSP 1 Score: 402.1 bits (1032), Expect = 2.7e-108
Identity = 187/195 (95.90%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEES PEPGSNR YSA+NGGRTKEECEDMIRRSLRTPMVKFL+EHLEKSGCGIGDKFIK
Sbjct: 1   MAEESAPEPGSNRSYSAINGGRTKEECEDMIRRSLRTPMVKFLLEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRG+VKLRGHEQECVRRRVMKSVIANPYCSEAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGYVKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

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BLAST of Carg04479 vs. NCBI nr
Match: XP_011655379.1 (mitochondrial inner membrane protease ATP23 [Cucumis sativus] >KGN51337.1 hypothetical protein Csa_008937 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 1.1e-106
Identity = 183/195 (93.85%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNR YS+VNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKS++ANPYC EAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

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BLAST of Carg04479 vs. NCBI nr
Match: XP_008458847.1 (PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis melo] >KAA0037615.1 mitochondrial inner membrane protease ATP23 [Cucumis melo var. makuwa] >TYK09357.1 mitochondrial inner membrane protease ATP23 [Cucumis melo var. makuwa])

HSP 1 Score: 390.6 bits (1002), Expect = 8.1e-105
Identity = 180/195 (92.31%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNR YS+V GGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRSYSSVTGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKS+ ANPYC E AA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLTANPYCPEPAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WD+CYNDTQPFDRAP
Sbjct: 181 WDICYNDTQPFDRAP 195

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BLAST of Carg04479 vs. ExPASy Swiss-Prot
Match: P0CQ26 (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=ATP23 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 70/170 (41.18%), Postives = 102/170 (60.00%), Query Frame = 0


Query: 25  EECEDMIRRSLR-TPMVKFLMEHLEKSGCGIGDKFIKAVHCDKQISGGYVRGEGIMVCRN 84
           ++CE   R  +  +PM+ FL+ HL+ +GC      ++   C +  +GG+    GI++C++
Sbjct: 56  DKCEGWKRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQD 115

Query: 85  HMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGF 144
               +  +   + HEL+HAFD CR   +DW N  HHACSEIRA +LSGDC + RE+ RGF
Sbjct: 116 RFFNKKHMEDTLAHELVHAFDHCR-FKVDWGNLRHHACSEIRAANLSGDCRFTREVKRGF 175

Query: 145 VKLRGHEQECVRRRVMKSVIANPYC-SEAAARDAMESVWDVCYNDTQPFD 193
                  Q CV+RR + SV+ANP C S   A  A+  VW+ C+ DT+PFD
Sbjct: 176 YAFNKQHQACVKRRAILSVLANPACTSPEMAEKAVNEVWESCFTDTRPFD 224

[Close]

BLAST of Carg04479 vs. ExPASy Swiss-Prot
Match: P0CQ27 (Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=ATP23 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-34
Identity = 70/170 (41.18%), Postives = 102/170 (60.00%), Query Frame = 0


Query: 25  EECEDMIRRSLR-TPMVKFLMEHLEKSGCGIGDKFIKAVHCDKQISGGYVRGEGIMVCRN 84
           ++CE   R  +  +PM+ FL+ HL+ +GC      ++   C +  +GG+    GI++C++
Sbjct: 56  DKCEGWKRDLMNYSPMITFLLNHLKLAGCPFPSSAMQCHPCPENRAGGFSPDHGILLCQD 115

Query: 85  HMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGF 144
               +  +   + HEL+HAFD CR   +DW N  HHACSEIRA +LSGDC + RE+ RGF
Sbjct: 116 RFFNKKHMEDTLAHELVHAFDHCR-FKVDWGNLRHHACSEIRAANLSGDCRFTREVKRGF 175

Query: 145 VKLRGHEQECVRRRVMKSVIANPYC-SEAAARDAMESVWDVCYNDTQPFD 193
                  Q CV+RR + SV+ANP C S   A  A+  VW+ C+ DT+PFD
Sbjct: 176 YAFNKQHQACVKRRAILSVLANPACTSPEMAERAVNEVWESCFTDTRPFD 224

[Close]

BLAST of Carg04479 vs. ExPASy Swiss-Prot
Match: Q7T0P7 (Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis OX=8355 GN=atp23 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-32
Identity = 74/174 (42.53%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 26  ECEDMIRRSLRT-PMVKFLMEHLEKSGCGI-GDKFIKAVHCDKQISGGY-VRGEGIMVCR 85
           +C+ M++ +L T P  K L++ +++SGC +  D+      CD  +SGG+      I++C+
Sbjct: 40  KCQLMLKIALDTSPYAKLLLDAMKQSGCTVYKDRHFSCEECDGSVSGGFDAATSEIVLCQ 99

Query: 86  NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHH-ACSEIRAGHLSGDCHYKRELLR 145
           N+++ Q  +N+VV HELIHAFD CR A++DW N   H ACSEIRA +LSGDC    EL R
Sbjct: 100 NNIHQQSHMNRVVTHELIHAFDHCR-AHVDWFNNVRHLACSEIRAANLSGDCTLANELTR 159

Query: 146 GFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESVWDVCYNDTQPFDRAP 196
               ++GH Q CVR R ++S++A    S   A  A++ V+D C+ND +PF R P
Sbjct: 160 FKFGVKGHHQVCVRDRALRSILAVRNISRETAEKAVDEVFDSCFNDHEPFGRIP 212

[Close]

BLAST of Carg04479 vs. ExPASy Swiss-Prot
Match: Q6C253 (Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ATP23 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.5e-32
Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 37  TPMVKFLMEHLEKSGCGIGDKFIKAVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVI 96
           +P V+F+ + +EK G  I    +   HCD   +GG+    GI+VC+NH+  +  +   + 
Sbjct: 90  SPTVRFMKDQIEKIGGDISSNNVFCDHCDDFKAGGFHPKYGILVCQNHVKSRSHLEDTLA 149

Query: 97  HELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKRELLRGFVK--LRGHEQECV 156
           HE++H +D+ +   +DW N  HHACSEIRA  LSG+C    EL++G +    RGH QEC 
Sbjct: 150 HEMVHYYDNTK-FKVDWMNLKHHACSEIRASTLSGECRMMNELMKGKLARLTRGH-QECA 209

Query: 157 RRRVMKSVIANPYC-SEAAARDAMESVWDVCYNDTQPFD 193
           +RR + SV+ANP C  EA A   +  VWD C+NDT+PFD
Sbjct: 210 KRRAILSVMANPGCKDEAQATQVVNEVWDSCFNDTRPFD 246

[Close]

BLAST of Carg04479 vs. ExPASy Swiss-Prot
Match: Q1MTR0 (Mitochondrial inner membrane protease atp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=atp23 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 71/176 (40.34%), Postives = 107/176 (60.80%), Query Frame = 0


Query: 22  RTKEECEDMIRRSL--RTPMVKFLMEHLEKSGCGIGDKFIKAVHCDKQISGGYVRGEGIM 81
           + ++ CE  ++R+L  ++P++ FL   L++  C I  K I    CD Q +GGY+ G+GI+
Sbjct: 10  KERKNCE-RVKRALMSQSPVIIFLKTALDRLNCNIEAKDISCQPCDAQSTGGYIPGKGIV 69

Query: 82  VCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHACSEIRAGHLSGDCHYKREL 141
           +C N +  +      + HE+IH FDD R   +DW N  H ACSEIRA  +SG+C + +EL
Sbjct: 70  LCENRLYTKKMAENTIAHEMIHMFDDHR-FEVDWNNLRHQACSEIRASSMSGECRWTKEL 129

Query: 142 LRGFVK-LRGHEQECVRRRVMKSVIANPYC-SEAAARDAMESVWDVCYNDTQPFDR 194
             G +K  R H QECV+RR   SV  NP C S+  A   +E V++ C+ND +PF++
Sbjct: 130 RFGNIKTFRKHHQECVKRRATISVQGNPNCKSKEQAEAIVEEVFNSCFNDFRPFEK 183

[Close]

BLAST of Carg04479 vs. ExPASy TrEMBL
Match: A0A6J1JUV4 (Mitochondrial inner membrane protease ATP23 OS=Cucurbita maxima OX=3661 GN=LOC111487709 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.3e-112
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK
Sbjct: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Carg04479 vs. ExPASy TrEMBL
Match: A0A6J1E2T7 (Mitochondrial inner membrane protease ATP23 OS=Cucurbita moschata OX=3662 GN=LOC111430307 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.3e-112
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK
Sbjct: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Carg04479 vs. ExPASy TrEMBL
Match: A0A6J1BVA8 (Mitochondrial inner membrane protease ATP23 OS=Momordica charantia OX=3673 GN=LOC111006067 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.3e-108
Identity = 187/195 (95.90%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEES PEPGSNR YSA+NGGRTKEECEDMIRRSLRTPMVKFL+EHLEKSGCGIGDKFIK
Sbjct: 1   MAEESAPEPGSNRSYSAINGGRTKEECEDMIRRSLRTPMVKFLLEHLEKSGCGIGDKFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHCDKQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA
Sbjct: 61  AVHCDKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRG+VKLRGHEQECVRRRVMKSVIANPYCSEAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGYVKLRGHEQECVRRRVMKSVIANPYCSEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Carg04479 vs. ExPASy TrEMBL
Match: A0A0A0KSC7 (Mitochondrial inner membrane protease ATP23 OS=Cucumis sativus OX=3659 GN=Csa_5G517840 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.4e-107
Identity = 183/195 (93.85%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNR YS+VNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRSYSSVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKS++ANPYC EAAA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLVANPYCPEAAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WDVCYNDTQPFDRAP
Sbjct: 181 WDVCYNDTQPFDRAP 195

[Close]

BLAST of Carg04479 vs. ExPASy TrEMBL
Match: A0A5D3CBI5 (Mitochondrial inner membrane protease ATP23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00540 PE=3 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 3.9e-105
Identity = 180/195 (92.31%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           MAEESTPEPGSNR YS+V GGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGD+FIK
Sbjct: 1   MAEESTPEPGSNRSYSSVTGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDRFIK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AVHC+KQISGGYVRGEGIMVC NHMNIQDEVNQVVIHELIHAFDDCRAANLDWANC HHA
Sbjct: 61  AVHCEKQISGGYVRGEGIMVCSNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCTHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCHYKRELLRGF+KLRGHEQECVRRRVMKS+ ANPYC E AA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHYKRELLRGFMKLRGHEQECVRRRVMKSLTANPYCPEPAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WD+CYNDTQPFDRAP
Sbjct: 181 WDICYNDTQPFDRAP 195

[Close]

BLAST of Carg04479 vs. TAIR 10
Match: AT3G03420.1 (Ku70-binding family protein )

HSP 1 Score: 301.6 bits (771), Expect = 4.6e-82
Identity = 134/195 (68.72%), Postives = 160/195 (82.05%), Query Frame = 0


Query: 1   MAEESTPEPGSNRLYSAVNGGRTKEECEDMIRRSLRTPMVKFLMEHLEKSGCGIGDKFIK 60
           M + + P  GS         G++ +EC+DMIRRS R P+VKFLME +EKSGC +GD F+K
Sbjct: 1   MEDAAAPNSGS-EFNPGARRGKSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVK 60

Query: 61  AVHCDKQISGGYVRGEGIMVCRNHMNIQDEVNQVVIHELIHAFDDCRAANLDWANCAHHA 120
           AV C   ++GGY +G GI VC N++ IQDEVNQVVIHELIHA+D+CRA NLDW NCAHHA
Sbjct: 61  AVVCTGPVAGGYTKGRGITVCSNYLTIQDEVNQVVIHELIHAYDECRAKNLDWTNCAHHA 120

Query: 121 CSEIRAGHLSGDCHYKRELLRGFVKLRGHEQECVRRRVMKSVIANPYCSEAAARDAMESV 180
           CSEIRAGHLSGDCH+KRELLRGF+KLRGHEQEC++RRV+KS+  NPYCSE AA+DAME+V
Sbjct: 121 CSEIRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSLRGNPYCSEVAAKDAMEAV 180

Query: 181 WDVCYNDTQPFDRAP 196
           WD CYNDT+PFDRAP
Sbjct: 181 WDTCYNDTKPFDRAP 194

The following BLAST results are available for this feature:

BLAST of Carg04479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922282.1	8.9e-112	100.00	mitochondrial inner membrane protease ATP23 [Cucurbita moschata] >XP_022990978.1...	[more]
XP_038890541.1	1.6e-108	96.41	mitochondrial inner membrane protease ATP23 [Benincasa hispida]	[more]
XP_022133506.1	2.7e-108	95.90	mitochondrial inner membrane protease ATP23 [Momordica charantia]	[more]
XP_011655379.1	1.1e-106	93.85	mitochondrial inner membrane protease ATP23 [Cucumis sativus] >KGN51337.1 hypoth...	[more]
XP_008458847.1	8.1e-105	92.31	PREDICTED: mitochondrial inner membrane protease ATP23 [Cucumis melo] >KAA003761...	[more]

BLAST of Carg04479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CQ26	1.6e-34	41.18	Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neof...	[more]
P0CQ27	2.0e-34	41.18	Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neof...	[more]
Q7T0P7	1.9e-32	42.53	Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis OX=8355 GN...	[more]
Q6C253	5.5e-32	42.77	Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB ...	[more]
Q1MTR0	2.7e-31	40.34	Mitochondrial inner membrane protease atp23 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Carg04479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUV4	4.3e-112	100.00	Mitochondrial inner membrane protease ATP23 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1E2T7	4.3e-112	100.00	Mitochondrial inner membrane protease ATP23 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1BVA8	1.3e-108	95.90	Mitochondrial inner membrane protease ATP23 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0KSC7	5.4e-107	93.85	Mitochondrial inner membrane protease ATP23 OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]
A0A5D3CBI5	3.9e-105	92.31	Mitochondrial inner membrane protease ATP23 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Carg04479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03420.1	4.6e-82	68.72	Ku70-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019165	Peptidase M76, ATP23	PFAM	PF09768	Peptidase_M76	coord: 25..192 e-value: 6.7E-58 score: 195.2
IPR019165	Peptidase M76, ATP23	PANTHER	PTHR21711	MITOCHONDRIAL INNER MEMBRANE PROTEASE	coord: 21..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04479-RA	Carg04479-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034982	mitochondrial protein processing
biological_process	GO:0033615	mitochondrial proton-transporting ATP synthase complex assembly
cellular_component	GO:0031314	extrinsic component of mitochondrial inner membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity