Carg04459 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04459
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 20320637 .. 20321026 (+)
RNA-Seq Expression	Carg04459
Synteny	Carg04459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATAGCATTAGAATTCATTACTTCCAAAACTACTAGATATGATAATCGGGAATTGAGGCTTCATCGTCGGCTCAAAACCAGACGATCGAAATCTTGAACTAGGAGAGAATTTTGCCGGTGGAAAATACGGAGAAAGGAAAATGCGAAGAATCTAGCGGGAAATTTCCATGTTTGCATAAGAAATATCTTTGATGTACGTGGTGCAGAATCAATCGAGACCCGAACCGATCAAGCCGAATCATCCGGTTCATATCATTTTGACAAACCGAACCGACCGTTCAACCCGAATACTTCCGGGTTAACTGAGCTCACGTTTCCTTCTTCTTCTTCTTCTTCTTCTTTTGCTGAACTTGGTTTTTCAATTGAGCAGCAGATTCAGAGCTAA

mRNA sequence

ATGGCGATAGCATTAGAATTCATTACTTCCAAAACTACTAGATATGATAATCGGGAATTGAGGCTTCATCAATCAATCGAGACCCGAACCGATCAAGCCGAATCATCCGGTTCATATCATTTTGACAAACCGAACCGACCGTTCAACCCGAATACTTCCGGGTTAACTGAGCTCACGTTTCCTTCTTCTTCTTCTTCTTCTTCTTTTGCTGAACTTGGTTTTTCAATTGAGCAGCAGATTCAGAGCTAA

Coding sequence (CDS)

ATGGCGATAGCATTAGAATTCATTACTTCCAAAACTACTAGATATGATAATCGGGAATTGAGGCTTCATCAATCAATCGAGACCCGAACCGATCAAGCCGAATCATCCGGTTCATATCATTTTGACAAACCGAACCGACCGTTCAACCCGAATACTTCCGGGTTAACTGAGCTCACGTTTCCTTCTTCTTCTTCTTCTTCTTCTTTTGCTGAACTTGGTTTTTCAATTGAGCAGCAGATTCAGAGCTAA

Protein sequence

MAIALEFITSKTTRYDNRELRLHQSIETRTDQAESSGSYHFDKPNRPFNPNTSGLTELTFPSSSSSSSFAELGFSIEQQIQS

Homology

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BLAST of Carg04459 vs. NCBI nr
Match: KAG7033094.1 (hypothetical protein SDJN02_07147, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MAIALEFITSKTTRYDNRELRLHQSIETRTDQAESSGSYHFDKPNRPFNPNTSGLTELTF 60
          MAIALEFITSKTTRYDNRELRLHQSIETRTDQAESSGSYHFDKPNRPFNPNTSGLTELTF
Sbjct: 1  MAIALEFITSKTTRYDNRELRLHQSIETRTDQAESSGSYHFDKPNRPFNPNTSGLTELTF 60

Query: 61 PSSSSSSSFAELGFSIEQQIQS 83
          PSSSSSSSFAELGFSIEQQIQS
Sbjct: 61 PSSSSSSSFAELGFSIEQQIQS 82

The following BLAST results are available for this feature:

BLAST of Carg04459 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033094.1	4.8e-35	100.00	hypothetical protein SDJN02_07147, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg04459 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04459 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04459 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04459-RA	Carg04459-RA	mRNA