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Carg04454 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCTCCATCTTCACCAAACATCCTTCCTTCTCTCCAAGTTTTCTCCCTCAAATCCTCTAATTCTTCTACCTTATTTCTTGTTAAATTCAAATCTTTCCTTCACACTATCATCTTCTCCCATTTGTGTCGGTTGGCTCGGGCGATCTCCCGAGCCAAGTCGACCGTGGTTCGGGTTTTGAAGAAAAATTATCACTACACGAATAGAAACAAGAACAAGATCTTTTTCGGGTCGTTTAGACTTCATTATAATTGGTGTTCTTCCCATGTGATGCCTGTGCCTGACCCCGTGTGGGAAGGTCATTTTTACTACGACACTGCCACTGCGGACAGCTCGCAGCTGTCCGGGTATTTGCAATGGTTGGAGGAGAGGAAATTAGAGAGCGAGACGGCAGCGGGGGTGACGACGATCGCAACGGAGATGAATGAGATCGACAAATTGGCGGAGATGTTCATAGCAAGCTGCCATGAGAAATTTAGGCTGGAGAAACAGGAATCAGCTAGAAGATTTCAAGAGATGATGGCAAGAAGCATGTGA ATGGCTGCTCCATCTTCACCAAACATCCTTCCTTCTCTCCAAGTTTTCTCCCTCAAATCCTCTAATTCTTCTACCTTATTTCTTGTTAAATTCAAATCTTTCCTTCACACTATCATCTTCTCCCATTTGTGTCGGTTGGCTCGGGCGATCTCCCGAGCCAAGTCGACCGTGGTTCGGGTTTTGAAGAAAAATTATCACTACACGAATAGAAACAAGAACAAGATCTTTTTCGGGTCGTTTAGACTTCATTATAATTGGTGTTCTTCCCATGTGATGCCTGTGCCTGACCCCGTGTGGGAAGGTCATTTTTACTACGACACTGCCACTGCGGACAGCTCGCAGCTGTCCGGGTATTTGCAATGGTTGGAGGAGAGGAAATTAGAGAGCGAGACGGCAGCGGGGGTGACGACGATCGCAACGGAGATGAATGAGATCGACAAATTGGCGGAGATGTTCATAGCAAGCTGCCATGAGAAATTTAGGCTGGAGAAACAGGAATCAGCTAGAAGATTTCAAGAGATGATGGCAAGAAGCATGTGA ATGGCTGCTCCATCTTCACCAAACATCCTTCCTTCTCTCCAAGTTTTCTCCCTCAAATCCTCTAATTCTTCTACCTTATTTCTTGTTAAATTCAAATCTTTCCTTCACACTATCATCTTCTCCCATTTGTGTCGGTTGGCTCGGGCGATCTCCCGAGCCAAGTCGACCGTGGTTCGGGTTTTGAAGAAAAATTATCACTACACGAATAGAAACAAGAACAAGATCTTTTTCGGGTCGTTTAGACTTCATTATAATTGGTGTTCTTCCCATGTGATGCCTGTGCCTGACCCCGTGTGGGAAGGTCATTTTTACTACGACACTGCCACTGCGGACAGCTCGCAGCTGTCCGGGTATTTGCAATGGTTGGAGGAGAGGAAATTAGAGAGCGAGACGGCAGCGGGGGTGACGACGATCGCAACGGAGATGAATGAGATCGACAAATTGGCGGAGATGTTCATAGCAAGCTGCCATGAGAAATTTAGGCTGGAGAAACAGGAATCAGCTAGAAGATTTCAAGAGATGATGGCAAGAAGCATGTGA MAAPSSPNILPSLQVFSLKSSNSSTLFLVKFKSFLHTIIFSHLCRLARAISRAKSTVVRVLKKNYHYTNRNKNKIFFGSFRLHYNWCSSHVMPVPDPVWEGHFYYDTATADSSQLSGYLQWLEERKLESETAAGVTTIATEMNEIDKLAEMFIASCHEKFRLEKQESARRFQEMMARSM Homology
BLAST of Carg04454 vs. NCBI nr
Match: KAG7033099.1 (hypothetical protein SDJN02_07152, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 351.7 bits (901), Expect = 3.8e-93 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
BLAST of Carg04454 vs. NCBI nr
Match: XP_022961611.1 (uncharacterized protein LOC111462262 [Cucurbita moschata] >KAG6602421.1 hypothetical protein SDJN03_07654, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 349.7 bits (896), Expect = 1.4e-92 Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0
BLAST of Carg04454 vs. NCBI nr
Match: XP_023548199.1 (uncharacterized protein LOC111806908 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548209.1 uncharacterized protein LOC111806908 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 344.0 bits (881), Expect = 7.9e-91 Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0
BLAST of Carg04454 vs. NCBI nr
Match: XP_022991048.1 (uncharacterized protein LOC111487754 [Cucurbita maxima]) HSP 1 Score: 334.3 bits (856), Expect = 6.3e-88 Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0
BLAST of Carg04454 vs. NCBI nr
Match: XP_038890518.1 (uncharacterized protein LOC120080048 [Benincasa hispida]) HSP 1 Score: 290.8 bits (743), Expect = 8.0e-75 Identity = 150/181 (82.87%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of Carg04454 vs. ExPASy TrEMBL
Match: A0A6J1HAU6 (uncharacterized protein LOC111462262 OS=Cucurbita moschata OX=3662 GN=LOC111462262 PE=4 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 7.0e-93 Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0
BLAST of Carg04454 vs. ExPASy TrEMBL
Match: A0A6J1JV22 (uncharacterized protein LOC111487754 OS=Cucurbita maxima OX=3661 GN=LOC111487754 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 3.0e-88 Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0
BLAST of Carg04454 vs. ExPASy TrEMBL
Match: A0A0A0KP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523130 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 3.3e-74 Identity = 148/180 (82.22%), Postives = 158/180 (87.78%), Query Frame = 0
BLAST of Carg04454 vs. ExPASy TrEMBL
Match: A0A5D3BVA7 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00500 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 6.8e-72 Identity = 146/181 (80.66%), Postives = 157/181 (86.74%), Query Frame = 0
BLAST of Carg04454 vs. ExPASy TrEMBL
Match: A0A1S3C8P2 (uncharacterized protein LOC103498096 OS=Cucumis melo OX=3656 GN=LOC103498096 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 6.8e-72 Identity = 146/181 (80.66%), Postives = 157/181 (86.74%), Query Frame = 0
BLAST of Carg04454 vs. TAIR 10
Match: AT3G57950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32 Identity = 80/179 (44.69%), Postives = 106/179 (59.22%), Query Frame = 0
BLAST of Carg04454 vs. TAIR 10
Match: AT5G06790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27 Identity = 86/204 (42.16%), Postives = 109/204 (53.43%), Query Frame = 0
BLAST of Carg04454 vs. TAIR 10
Match: AT2G42180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 83.6 bits (205), Expect = 1.8e-16 Identity = 69/178 (38.76%), Postives = 94/178 (52.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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