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Carg04452 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGATCGTTATCCATCACTCCTCAGATCACAGTGAAGAGGTCTGCAAAATCTTCCCTCTAATTTTCCCTTTTACAATTTGCTTAATCTGCCTCTAATGGCCGTTCGTTTCGCCATTGAAGTTTCTCGGCAGGCGACGCTAGAAGAAGAACATACACAATCAGCACATCTCAGAAATCTGCCATTCCTATCGGACGGCCCTCGAGATTCGGAAATTTCACCTCGCGATTCCGCATGAGTGTCGATAATGGAGGCTCGAGTCAGAGCCGAGATCGGATTGGTGCGGGAGATGCAGTCATTATCGTCGACCATGGCTCCCGGCGGCAGGAATCTAACCTCATGCTGAGTAAGTTAGGGTTTTGGAATTTGGGTGAGATTGCAAATTCTACGCAATCTAATTCTGTTGTGAATTTCAGATGCGTTCGTTGCTATGTTTAGGGATAAAACTGGTTACCCTATTGTGGAGCCTGCTCCCATGGTATGTTCTTCTTAACTGCATTTTTCTTGTGGGGCTGTAATGAATTCTCTTTTACTTTGCTCTAAAAACCACAGGAGCTGGCTAAACCTTCGATAAGAGACGCATTCAAATCGTGCGTTGAACAAGGGGCCAAACGCATCATCATAAGCCCGTTCTTCCTCTTCCCCGGTCGACATTGGCAACAGGTAACTTGCTGTAAGGCAGTTGATTTGATGAAATGACTCTTTCAGTAAGTGGATTGATAGCAATGGCTGGAATTTTGTAGGATATTCCTTCCTTAACAGCTGAGGCAGCAAAGGACCACCCAGGAATATCATACATAGTAACTGCTCCTCTTGGTCTTCATGAAAAGCTTGTGGTAGGAATTTCTCAAGTATAGTGAAGAAACAGGTTCATAAATGATCAAAGAAAAAGAAAAGACTGTATTTGTTAGTATTGACATGTGAGGTGTTCTGTTTGCACTGGCAGGATGTTGTGAATGATAGAATTAATCACTGCTTGAGTCATGCTGCTGGAGTTGCAGATGAATGTGAAGTTTGTGCTGGAACAGGCAAATGCAGATTTAATTAA ATGAGATCGTTATCCATCACTCCTCAGATCACAGTGAAGAGTTTCTCGGCAGGCGACGCTAGAAGAAGAACATACACAATCAGCACATCTCAGAAATCTGCCATTCCTATCGGACGGCCCTCGAGATTCGGAAATTTCACCTCGCGATTCCGCATGAGTGTCGATAATGGAGGCTCGAGTCAGAGCCGAGATCGGATTGGTGCGGGAGATGCAGTCATTATCGTCGACCATGGCTCCCGGCGGCAGGAATCTAACCTCATGCTGAATGCGTTCGTTGCTATGTTTAGGGATAAAACTGGTTACCCTATTGTGGAGCCTGCTCCCATGGAGCTGGCTAAACCTTCGATAAGAGACGCATTCAAATCGTGCGTTGAACAAGGGGCCAAACGCATCATCATAAGCCCGTTCTTCCTCTTCCCCGGTCGACATTGGCAACAGGATATTCCTTCCTTAACAGCTGAGGCAGCAAAGGACCACCCAGGAATATCATACATAGTAACTGCTCCTCTTGGTCTTCATGAAAAGCTTGTGGATGTTGTGAATGATAGAATTAATCACTGCTTGAGTCATGCTGCTGGAGTTGCAGATGAATGTGAAGTTTGTGCTGGAACAGGCAAATGCAGATTTAATTAA ATGAGATCGTTATCCATCACTCCTCAGATCACAGTGAAGAGTTTCTCGGCAGGCGACGCTAGAAGAAGAACATACACAATCAGCACATCTCAGAAATCTGCCATTCCTATCGGACGGCCCTCGAGATTCGGAAATTTCACCTCGCGATTCCGCATGAGTGTCGATAATGGAGGCTCGAGTCAGAGCCGAGATCGGATTGGTGCGGGAGATGCAGTCATTATCGTCGACCATGGCTCCCGGCGGCAGGAATCTAACCTCATGCTGAATGCGTTCGTTGCTATGTTTAGGGATAAAACTGGTTACCCTATTGTGGAGCCTGCTCCCATGGAGCTGGCTAAACCTTCGATAAGAGACGCATTCAAATCGTGCGTTGAACAAGGGGCCAAACGCATCATCATAAGCCCGTTCTTCCTCTTCCCCGGTCGACATTGGCAACAGGATATTCCTTCCTTAACAGCTGAGGCAGCAAAGGACCACCCAGGAATATCATACATAGTAACTGCTCCTCTTGGTCTTCATGAAAAGCTTGTGGATGTTGTGAATGATAGAATTAATCACTGCTTGAGTCATGCTGCTGGAGTTGCAGATGAATGTGAAGTTTGTGCTGGAACAGGCAAATGCAGATTTAATTAA MRSLSITPQITVKSFSAGDARRRTYTISTSQKSAIPIGRPSRFGNFTSRFRMSVDNGGSSQSRDRIGAGDAVIIVDHGSRRQESNLMLNAFVAMFRDKTGYPIVEPAPMELAKPSIRDAFKSCVEQGAKRIIISPFFLFPGRHWQQDIPSLTAEAAKDHPGISYIVTAPLGLHEKLVDVVNDRINHCLSHAAGVADECEVCAGTGKCRFN Homology
BLAST of Carg04452 vs. NCBI nr
Match: KAG7033101.1 (Sirohydrochlorin ferrochelatase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 425.2 bits (1092), Expect = 3.2e-115 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg04452 vs. NCBI nr
Match: XP_023548507.1 (sirohydrochlorin ferrochelatase, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108 Identity = 199/210 (94.76%), Postives = 202/210 (96.19%), Query Frame = 0
BLAST of Carg04452 vs. NCBI nr
Match: XP_038890885.1 (sirohydrochlorin ferrochelatase, chloroplastic isoform X1 [Benincasa hispida]) HSP 1 Score: 352.8 bits (904), Expect = 2.0e-93 Identity = 179/211 (84.83%), Postives = 192/211 (91.00%), Query Frame = 0
BLAST of Carg04452 vs. NCBI nr
Match: XP_022134499.1 (sirohydrochlorin ferrochelatase, chloroplastic [Momordica charantia]) HSP 1 Score: 352.1 bits (902), Expect = 3.4e-93 Identity = 175/209 (83.73%), Postives = 187/209 (89.47%), Query Frame = 0
BLAST of Carg04452 vs. NCBI nr
Match: KAA0037556.1 (sirohydrochlorin ferrochelatase [Cucumis melo var. makuwa] >TYK03116.1 sirohydrochlorin ferrochelatase [Cucumis melo var. makuwa]) HSP 1 Score: 345.5 bits (885), Expect = 3.2e-91 Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy Swiss-Prot
Match: Q84JH7 (Sirohydrochlorin ferrochelatase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIRB PE=1 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.5e-59 Identity = 113/183 (61.75%), Postives = 138/183 (75.41%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy Swiss-Prot
Match: P61817 (Sirohydrochlorin ferrochelatase OS=Bacillus megaterium OX=1404 GN=sirB PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy Swiss-Prot
Match: Q58380 (Sirohydrochlorin cobaltochelatase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=cbiX PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13 Identity = 43/138 (31.16%), Postives = 66/138 (47.83%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy Swiss-Prot
Match: P61819 (Sirohydrochlorin cobaltochelatase OS=Methanococcus maripaludis (strain S2 / LL) OX=267377 GN=cbiX PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.2e-13 Identity = 39/141 (27.66%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy Swiss-Prot
Match: A6UWT5 (Sirohydrochlorin cobaltochelatase OS=Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3) OX=419665 GN=cbiX PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11 Identity = 40/138 (28.99%), Postives = 64/138 (46.38%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy TrEMBL
Match: A0A6J1BYW9 (sirohydrochlorin ferrochelatase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006726 PE=4 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 1.7e-93 Identity = 175/209 (83.73%), Postives = 187/209 (89.47%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy TrEMBL
Match: A0A5D3BY55 (Sirohydrochlorin ferrochelatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00520 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91 Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy TrEMBL
Match: A0A1S3C8S9 (sirohydrochlorin ferrochelatase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498093 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91 Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy TrEMBL
Match: A0A6J1K384 (sirohydrochlorin ferrochelatase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489668 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91 Identity = 175/212 (82.55%), Postives = 190/212 (89.62%), Query Frame = 0
BLAST of Carg04452 vs. ExPASy TrEMBL
Match: A0A6J1FHT5 (sirohydrochlorin ferrochelatase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445470 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 1.3e-90 Identity = 173/212 (81.60%), Postives = 189/212 (89.15%), Query Frame = 0
BLAST of Carg04452 vs. TAIR 10
Match: AT1G50170.1 (sirohydrochlorin ferrochelatase B ) HSP 1 Score: 230.7 bits (587), Expect = 1.1e-60 Identity = 113/183 (61.75%), Postives = 138/183 (75.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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