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Carg04439 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN Homology
BLAST of Carg04439 vs. NCBI nr
Match: XP_022962836.1 (uncharacterized protein LOC111463206 [Cucurbita moschata] >KAG6602434.1 hypothetical protein SDJN03_07667, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033114.1 hypothetical protein SDJN02_07167, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 327.4 bits (838), Expect = 7.0e-86 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Carg04439 vs. NCBI nr
Match: XP_022989907.1 (uncharacterized protein LOC111486958 [Cucurbita maxima]) HSP 1 Score: 317.0 bits (811), Expect = 9.5e-83 Identity = 162/169 (95.86%), Postives = 162/169 (95.86%), Query Frame = 0
BLAST of Carg04439 vs. NCBI nr
Match: XP_023536558.1 (uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80 Identity = 158/164 (96.34%), Postives = 159/164 (96.95%), Query Frame = 0
BLAST of Carg04439 vs. NCBI nr
Match: XP_038891069.1 (uncharacterized protein LOC120080480 [Benincasa hispida]) HSP 1 Score: 264.2 bits (674), Expect = 7.3e-67 Identity = 140/167 (83.83%), Postives = 145/167 (86.83%), Query Frame = 0
BLAST of Carg04439 vs. NCBI nr
Match: XP_008458773.1 (PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >KAA0037530.1 uncharacterized protein E6C27_scaffold277G001430 [Cucumis melo var. makuwa] >TYK02005.1 uncharacterized protein E5676_scaffold808G001190 [Cucumis melo var. makuwa]) HSP 1 Score: 255.0 bits (650), Expect = 4.4e-64 Identity = 134/167 (80.24%), Postives = 143/167 (85.63%), Query Frame = 0
BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A6J1HEE2 (uncharacterized protein LOC111463206 OS=Cucurbita moschata OX=3662 GN=LOC111463206 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 3.4e-86 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A6J1JH40 (uncharacterized protein LOC111486958 OS=Cucurbita maxima OX=3661 GN=LOC111486958 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 4.6e-83 Identity = 162/169 (95.86%), Postives = 162/169 (95.86%), Query Frame = 0
BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A1S3C8M3 (uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64 Identity = 134/167 (80.24%), Postives = 143/167 (85.63%), Query Frame = 0
BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A5A7T2E5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001190 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64 Identity = 134/167 (80.24%), Postives = 143/167 (85.63%), Query Frame = 0
BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A0A0KR58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63 Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0
BLAST of Carg04439 vs. TAIR 10
Match: AT5G14690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 115.2 bits (287), Expect = 5.1e-26 Identity = 80/188 (42.55%), Postives = 98/188 (52.13%), Query Frame = 0
BLAST of Carg04439 vs. TAIR 10
Match: AT3G01516.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24 Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 0
BLAST of Carg04439 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04 Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 0
BLAST of Carg04439 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04 Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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