Carg04439 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04439
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chromo domain-containing protein isoform 1
Location	Carg_Chr04: 20398568 .. 20399062 (-)
RNA-Seq Expression	Carg04439
Synteny	Carg04439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA

mRNA sequence

ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA

Coding sequence (CDS)

ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTTGGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGGCGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTGCCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGGTTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA

Protein sequence

MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

Homology

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_022962836.1 (uncharacterized protein LOC111463206 [Cucurbita moschata] >KAG6602434.1 hypothetical protein SDJN03_07667, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033114.1 hypothetical protein SDJN02_07167, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.4 bits (838), Expect = 7.0e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE 120

Query: 121 EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 164

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_022989907.1 (uncharacterized protein LOC111486958 [Cucurbita maxima])

HSP 1 Score: 317.0 bits (811), Expect = 9.5e-83
Identity = 162/169 (95.86%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSV-----E 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG AREEGLPEIVPGSV     E
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETGLGPAREEGLPEIVPGSVEEEEEE 120

Query: 121 EEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           EEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 EEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 169

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_023536558.1 (uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80
Identity = 158/164 (96.34%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG AREE LPEI+PGS EEEEEE
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETGLGPAREEELPEIMPGSGEEEEEE 120

Query: 121 EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           EE VGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 EE-VGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 163

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_038891069.1 (uncharacterized protein LOC120080480 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.3e-67
Identity = 140/167 (83.83%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS PTRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALAL+
Sbjct: 1   MQESPSRPTRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALI 60

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEE 120
           KLPWM+GRRCLQRA   RKKRKLIRR+ ECDGA AA ET    A EEGLPEI PGS    
Sbjct: 61  KLPWMVGRRCLQRARKKRKKRKLIRRRGECDGATAA-ETGGCAASEEGLPEISPGS---- 120

Query: 121 EEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
            EEEE VGNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 GEEEETVGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of Carg04439 vs. NCBI nr
Match: XP_008458773.1 (PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >KAA0037530.1 uncharacterized protein E6C27_scaffold277G001430 [Cucumis melo var. makuwa] >TYK02005.1 uncharacterized protein E5676_scaffold808G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-64
Identity = 134/167 (80.24%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEE 120
           KLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET   +  E+GLPEI PGS    
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAA-ETGGCVGNEKGLPEISPGS---- 120

Query: 121 EEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
            EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 GEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A6J1HEE2 (uncharacterized protein LOC111463206 OS=Cucurbita moschata OX=3662 GN=LOC111463206 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.4e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEE 120

Query: 121 EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 164

[Close]

BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A6J1JH40 (uncharacterized protein LOC111486958 OS=Cucurbita maxima OX=3661 GN=LOC111486958 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.6e-83
Identity = 162/169 (95.86%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSV-----E 120
           KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG AREEGLPEIVPGSV     E
Sbjct: 61  KLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETGLGPAREEGLPEIVPGSVEEEEEE 120

Query: 121 EEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
           EEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Sbjct: 121 EEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 169

[Close]

BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A1S3C8M3 (uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64
Identity = 134/167 (80.24%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEE 120
           KLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET   +  E+GLPEI PGS    
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAA-ETGGCVGNEKGLPEISPGS---- 120

Query: 121 EEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
            EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 GEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A5A7T2E5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001190 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64
Identity = 134/167 (80.24%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEE 120
           KLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET   +  E+GLPEI PGS    
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAA-ETGGCVGNEKGLPEISPGS---- 120

Query: 121 EEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
            EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 GEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of Carg04439 vs. ExPASy TrEMBL
Match: A0A0A0KR58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 86  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 145

Query: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEE 120
           KLPWM+GRRCLQ+A   RKKRKL+ R+ ECDGA AA ET   +  E+GLPE+ PGS    
Sbjct: 146 KLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETGGCVGNEKGLPEVSPGS---- 205

Query: 121 EEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 165
            EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 206 GEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 247

[Close]

BLAST of Carg04439 vs. TAIR 10
Match: AT5G14690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-26
Identity = 80/188 (42.55%), Postives = 98/188 (52.13%), Query Frame = 0


Query: 10  RRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRR 69
           RRRR       D + CS K CRS  A  +ADCVA+CCCPC++++ L L LVK+PWMIGRR
Sbjct: 28  RRRRHNHHTHGDEVKCSSKRCRSWAAAAIADCVALCCCPCAIINLLTLTLVKVPWMIGRR 87

Query: 70  CL---QRARKKRKLI-RRKR--------------------------ECDGAAAASETALG 129
           CL    R +KKR++I RRKR                          E  G         G
Sbjct: 88  CLGGGGRNKKKRRVIHRRKRRGNINGEDEFYHHNNHHRRFETAEEGEKCGCGGGGGGCYG 147

Query: 130 LAREEGLPEIV--PGSVEEEEEEEEGV----------GNFSARFEAERIWLQLYQLGQLG 156
               +    +V   GS+ +EEEEEE               SAR EAER+WL+LYQ+G LG
Sbjct: 148 GGDYDDHRFVVERDGSLTKEEEEEERTTSCKGEDHDESRISARVEAERVWLELYQIGHLG 207

[Close]

BLAST of Carg04439 vs. TAIR 10
Match: AT3G01516.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 25  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQR---ARKKRKLI 84
           CSGK CRS  A  +ADCVA+CCCPC+VV+   LA VK+PWMIGR+C+ R   ++K+ K I
Sbjct: 33  CSGKRCRSWAAAAIADCVALCCCPCAVVNIFTLAFVKVPWMIGRKCIGRGGPSKKRMKKI 92

Query: 85  RRKRE------------------C---DGAAAASETALGLAREEGLPEIVPGSVEEEEEE 144
            R+                    C   DG     +    + R+  L +    +   +EEE
Sbjct: 93  NREDRFHHHHHHRRSAEMVSGGCCGGGDGDGEFDDHRFVVERDGSLTKEEAKTASLKEEE 152

Query: 145 EEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTG 156
           E  +   SAR EAER+WL+LYQ+G LGFGRVSFTG
Sbjct: 153 ETRI---SARVEAERVWLELYQIGHLGFGRVSFTG 184

[Close]

BLAST of Carg04439 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 27  GKHCRSCTAGLVADCVAVC-CCPCSVVSFLALALVKLPWMIGRRCLQRARKKR----KLI 86
           G     C  G  A C A+C C PCSVV+ + LA+ KLP  + RR ++R R+KR    + +
Sbjct: 20  GSTTAECCGGTTASCAALCLCAPCSVVNLVVLAVYKLPRGLCRRAIRRIRRKRLAKKEFV 79

Query: 87  RRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEEEEGV----GNFSARFEAERIW 143
              RE  G   +S+ A+        P       EEEEEE+E V        +RF +   W
Sbjct: 80  ESGREF-GRGGSSQFAVH-------PLESRDEEEEEEEEDEAVIALEKEMWSRFYSGGFW 136

[Close]

BLAST of Carg04439 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 4   SPSPPTRRRRFP-----VDDGVDLIDCSGKHCRSCTAGLVADCVAV-CCCPCSVVSFLAL 63
           S SP    RR P     +        C G        G  A C AV CCCPC +V+ L L
Sbjct: 23  SSSPSRSNRRQPLLQRSLSSPSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLVNLLVL 82

Query: 64  ALVKLPWMIGRRCLQRARKKRKLIR 83
           A+ K+P  I RR + R+R++++L++
Sbjct: 83  AIYKVPKGICRRAI-RSRRRKQLVK 106

The following BLAST results are available for this feature:

BLAST of Carg04439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962836.1	7.0e-86	100.00	uncharacterized protein LOC111463206 [Cucurbita moschata] >KAG6602434.1 hypothet...	[more]
XP_022989907.1	9.5e-83	95.86	uncharacterized protein LOC111486958 [Cucurbita maxima]	[more]
XP_023536558.1	2.0e-80	96.34	uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo]	[more]
XP_038891069.1	7.3e-67	83.83	uncharacterized protein LOC120080480 [Benincasa hispida]	[more]
XP_008458773.1	4.4e-64	80.24	PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 P...	[more]

BLAST of Carg04439 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEE2	3.4e-86	100.00	uncharacterized protein LOC111463206 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A6J1JH40	4.6e-83	95.86	uncharacterized protein LOC111486958 OS=Cucurbita maxima OX=3661 GN=LOC111486958...	[more]
A0A1S3C8M3	2.2e-64	80.24	uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=...	[more]
A0A5A7T2E5	2.2e-64	80.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KR58	1.8e-63	79.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1	[more]

BLAST of Carg04439 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14690.1	5.1e-26	42.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G01516.1	2.8e-24	43.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G06380.1	1.1e-04	34.40	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11690.1	4.2e-04	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33264:SF6	OS01G0661650 PROTEIN	coord: 7..160
None	No IPR available	PANTHER	PTHR33264	EXPRESSED PROTEIN	coord: 7..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04439-RA	Carg04439-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane