Carg04434 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04434
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 20420605 .. 20421145 (-)
RNA-Seq ExpressionCarg04434
SyntenyCarg04434
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTTTTGGAGGGCGTGTAGTGAATGTAAAATTACGGAATCTTCCTAAGCAGGCAAACATACCAGGAAGGGTGGAACTGGGTGGGTTTCCAAGAAGGATGGAAGTTTAGGAGTTTGTGTTGGAAGCTTTGTTGAATTTGCTGCCTTTCTTTTCCTTCTGAGTTTGTTATCAAACTTGTTCCTTTTCCCTCTATAATGTCTAACTATTCATCCTGTTTGTATGTGCAGAATTTTTTTCAGTGGTCTTGGGAGCTTTGTTGGTTGTTTGCTGGTAGATGGTCTTAGAATTTAACATGCTCGAGGCTAAAGAGATGGCTTGCTTATTGATATCAAATTTTTGGAGTTCATTGGATATGCTCATTTTCCATTTGTCTTGATGCAGTTACAACTTATTTACAGTGTCCTGCTGATCAGAGAAAAATGCTATCAAAATGGAAGATTCCTTACATGGGTTTGAAGATTATTTCTTTGGAATATATTTTATTTAGTTTTACATCAGTTGGGACGTCTTTGGGCAAAAAAGTTTTACTTCTGTAA

mRNA sequence

ATGGATGCTTTTGGAGGGCGTGTAGTGAATGTAAAATTACGGAATCTTCCTAAGCAGGCAAACATACCAGGAAGGGTGGAACTGGTTACAACTTATTTACAGTGTCCTGCTGATCAGAGAAAAATGCTATCAAAATGGAAGATTCCTTACATGGTTGGGACGTCTTTGGGCAAAAAAGTTTTACTTCTGTAA

Coding sequence (CDS)

ATGGATGCTTTTGGAGGGCGTGTAGTGAATGTAAAATTACGGAATCTTCCTAAGCAGGCAAACATACCAGGAAGGGTGGAACTGGTTACAACTTATTTACAGTGTCCTGCTGATCAGAGAAAAATGCTATCAAAATGGAAGATTCCTTACATGGTTGGGACGTCTTTGGGCAAAAAAGTTTTACTTCTGTAA

Protein sequence

MDAFGGRVVNVKLRNLPKQANIPGRVELVTTYLQCPADQRKMLSKWKIPYMVGTSLGKKVLLL
Homology
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BLAST of Carg04434 vs. NCBI nr
Match: KAG7033119.1 (hypothetical protein SDJN02_07172, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 8.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MDAFGGRVVNVKLRNLPKQANIPGRVELVTTYLQCPADQRKMLSKWKIPYMVGTSLGKKV 60
          MDAFGGRVVNVKLRNLPKQANIPGRVELVTTYLQCPADQRKMLSKWKIPYMVGTSLGKKV
Sbjct: 1  MDAFGGRVVNVKLRNLPKQANIPGRVELVTTYLQCPADQRKMLSKWKIPYMVGTSLGKKV 60

Query: 61 LLL 64
          LLL
Sbjct: 61 LLL 63

The following BLAST results are available for this feature:
BLAST of Carg04434 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033119.18.3e-27100.00hypothetical protein SDJN02_07172, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04434 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04434 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04434 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04434-RACarg04434-RAmRNA