Carg04427 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04427
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	conserved peptide upstream open reading frame 33
Location	Carg_Chr04: 20453589 .. 20454038 (+)
RNA-Seq Expression	Carg04427
Synteny	Carg04427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGGAAAAATTCCAAGATTACAAGAGGATGGTGCCGAATCAGTAGGGGTATTATGGTCTTTTCACATTATTGGGAACTATAAATTGCGGTCGGACCCCGACTATCAAGTTTACCCGCTGATAACAACCAGAGGTTGCACAGTGCGTCGTTGAATCAATTCCGCTCTGGGACTGATTTCCCGGTCGTCGGAGTTCCTGTTTTCTGATCAAACATTCGTATTCTCTCTTTTTCCATCTCTCTATTTCTCTTTAGTGTTCATTTTGTTCTTCGATTTTTCTCTGATTCGAGGTTTGTTTTTGTGTTTTTTCTCAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTGTTTCCCCATTGGGAACACCGGCTAGGTTACTGTGGAGTACCAGCTTCTTCCGCCACAAGCTCATGATTTTTTAA

mRNA sequence

TACGGAAAAATTCCAAGATTACAAGAGGATGGTGCCGAATCAGTAGGGGTATTATGGTCTTTTCACATTATTGGGAACTATAAATTGCGGTCGGACCCCGACTATCAAGTTTACCCGCTGATAACAACCAGAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTGTTTCCCCATTGGGAACACCGGCTAGGTTACTGTGGAGTACCAGCTTCTTCCGCCACAAGCTCATGATTTTTTAA

Coding sequence (CDS)

TACGGAAAAATTCCAAGATTACAAGAGGATGGTGCCGAATCAGTAGGGGTATTATGGTCTTTTCACATTATTGGGAACTATAAATTGCGGTCGGACCCCGACTATCAAGTTTACCCGCTGATAACAACCAGAGAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAGAGCTGGTGGTGTGATGGGGTTTTGTGTTTCCCCATTGGGAACACCGGCTAGGTTACTGTGGAGTACCAGCTTCTTCCGCCACAAGCTCATGATTTTTTAA

Protein sequence

YGKIPRLQEDGAESVGVLWSFHIIGNYKLRSDPDYQVYPLITTREVFETDEELGNNRAGGVMGFCVSPLGTPARLLWSTSFFRHKLMIF

Homology

[Close]

BLAST of Carg04427 vs. NCBI nr
Match: KAG7033126.1 (hypothetical protein SDJN02_07179, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 6.6e-46
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  YGKIPRLQEDGAESVGVLWSFHIIGNYKLRSDPDYQVYPLITTREVFETDEELGNNRAGG 60
          YGKIPRLQEDGAESVGVLWSFHIIGNYKLRSDPDYQVYPLITTREVFETDEELGNNRAGG
Sbjct: 1  YGKIPRLQEDGAESVGVLWSFHIIGNYKLRSDPDYQVYPLITTREVFETDEELGNNRAGG 60

Query: 61 VMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          VMGFCVSPLGTPARLLWSTSFFRHKLMIF
Sbjct: 61 VMGFCVSPLGTPARLLWSTSFFRHKLMIF 89

[Close]

BLAST of Carg04427 vs. NCBI nr
Match: KAG7016183.1 (hypothetical protein SDJN02_21287, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-16
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 40 LITTREVFETDEELGNNRAGGVMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          L T + VFETDE LGNNRAG VMGFC+SPLGTPARLLWSTSFFRHKLMIF
Sbjct: 26 LFTIKLVFETDEALGNNRAGRVMGFCISPLGTPARLLWSTSFFRHKLMIF 75

[Close]

BLAST of Carg04427 vs. NCBI nr
Match: XP_030447493.1 (deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Syzygium oleosum])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 51  EELGNNRAG-GVMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
           EELG    G GVMGFC+ PL TPARLLWSTSFFRHKLM+F
Sbjct: 345 EELGKAVVGSGVMGFCICPLDTPARLLWSTSFFRHKLMLF 384

[Close]

BLAST of Carg04427 vs. NCBI nr
Match: PIN00164.1 (hypothetical protein CDL12_27332 [Handroanthus impetiginosus])

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 61 VMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          +MGFC+ PL TPARLLWSTSFFRHKLM+F
Sbjct: 1  MMGFCICPLETPARLLWSTSFFRHKLMLF 29

[Close]

BLAST of Carg04427 vs. NCBI nr
Match: PHU27564.1 (hypothetical protein BC332_05896 [Capsicum chinense])

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-05
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 62 MGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          MGFC+ PL TPARLLWSTSFFRHKLM+F
Sbjct: 1  MGFCICPLETPARLLWSTSFFRHKLMLF 28

[Close]

BLAST of Carg04427 vs. ExPASy TrEMBL
Match: A0A2G9G4C3 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27332 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 61 VMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          +MGFC+ PL TPARLLWSTSFFRHKLM+F
Sbjct: 1  MMGFCICPLETPARLLWSTSFFRHKLMLF 29

[Close]

BLAST of Carg04427 vs. ExPASy TrEMBL
Match: A0A2G3D9B2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_05896 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 62 MGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          MGFC+ PL TPARLLWSTSFFRHKLM+F
Sbjct: 1  MGFCICPLETPARLLWSTSFFRHKLMLF 28

[Close]

BLAST of Carg04427 vs. ExPASy TrEMBL
Match: A2NW02 (A.thaliana homeobox gene Athb-1 mRNA OS=Arabidopsis thaliana OX=3702 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 61 VMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          +MGFC+ PL +PARLLWSTSFFRHK+MIF
Sbjct: 1  MMGFCICPLESPARLLWSTSFFRHKIMIF 29

[Close]

BLAST of Carg04427 vs. ExPASy TrEMBL
Match: A0A2G9GBV9 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24776 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 61 VMGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          +MGFC+ PL TPARLLW +SFFRHKLM+F
Sbjct: 1  MMGFCICPLETPARLLWCSSFFRHKLMLF 29

[Close]

BLAST of Carg04427 vs. TAIR 10
Match: AT3G01472.1 (conserved peptide upstream open reading frame 33 )

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 62 MGFCVSPLGTPARLLWSTSFFRHKLMIF 90
          MGFC+ PL +PARLLWSTSFFRHK+MIF
Sbjct: 1  MGFCICPLESPARLLWSTSFFRHKIMIF 28

The following BLAST results are available for this feature:

BLAST of Carg04427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033126.1	6.6e-46	100.00	hypothetical protein SDJN02_07179, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7016183.1	5.4e-16	86.00	hypothetical protein SDJN02_21287, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_030447493.1	1.6e-07	77.50	deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Syzygium oleosu...	[more]
PIN00164.1	4.3e-05	82.76	hypothetical protein CDL12_27332 [Handroanthus impetiginosus]	[more]
PHU27564.1	5.6e-05	85.71	hypothetical protein BC332_05896 [Capsicum chinense]	[more]

BLAST of Carg04427 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9G4C3	2.1e-05	82.76	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27332 P...	[more]
A0A2G3D9B2	2.7e-05	85.71	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_05896 PE=4 SV=1	[more]
A2NW02	6.1e-05	79.31	A.thaliana homeobox gene Athb-1 mRNA OS=Arabidopsis thaliana OX=3702 PE=2 SV=1	[more]
A0A2G9GBV9	2.3e-04	75.86	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24776 P...	[more]

BLAST of Carg04427 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01472.1	1.5e-08	82.14	conserved peptide upstream open reading frame 33	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04427-RA	Carg04427-RA	mRNA