Carg04414 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04414
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
Location	Carg_Chr04: 20501534 .. 20504436 (-)
RNA-Seq Expression	Carg04414
Synteny	Carg04414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTATCTTCGTTTCAGAAAATTAATTGCAATTATAAGCCCTTTACTCCCACAATATTTAACAACAAAAAGAAATAACTATGAACAAATCCACAGATTATCCTTCTTCTTCCTCCTCCCAATTTACAGATTTCTTCTCTTCCTCGTTTTCCGTTGCTTTGTCCTAATGATTCTACAAGCTTCGTCGTTCAATATCGCCGTTCCACTCTCCGGTTCTTCCACCGGACGTTCCCGTCACAGCCATGTCGTTCGAGCTCAAGGTAATTATAGCCGGTTTTTTAAACTGATTCTAAATCTTGTTTTACTGTTGTTTGGAATTTTTCTTTTCAAATCTCGACATTCTAGCGCCAATTTTTGTTTGCTGTATCCTTCTCTGTGGATTCATTTAGATGTCCAACCACAAAGTTGTTCTTCTTGTTATTGTTCCTGTCTACCGCTTTTGGATATAGATCATTCGAATGTAATTTTGTTGTTACTTCAGGGGAACCGTCCGACAAGTCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGCAAGTCAGGAACGTATTTCTGTGTGGACAAGGGGGTTACTGCTGTTGTAATCAAGGTTATTTTCTGAGATTTTCTTGTGGTGTTATTTCCGTTACTTATAAATGGAATTTTCATTTTTCTGTCTTAATTCTGTAGTCATGAAGTTGTTTGAGTGGCTTACATGATTGTGTTTTATCTGTTGACCTTTATGGAACATCTCATTGATTGCACGCAAGGAATTGATAGGTTTTCTAGTTACTCATTCTCAAATTGAGCAATTATTTATTAGTTAGTGAAGCAATAGAGGAGAAGAAACTTCGTCTGTGCTCCCGCAGGTAGACGACAACGTTCATGAAATTTGATTACCTATATTCTTTGGAAATATTTTTTCTTGACATTGCTGATAAAGTTCATGATGGAAGAGTTTAGTTTTACTGTGGCAAGTTGATTGCATAAGTTCCAGAAGTTTATAACTCGATGAACCTGTACTAATGGATCTTTGTATTTAGTCTCCGTTATGTTTATGGGTACAGTTGTATCGACATTAGATGAAATTGATTGAATGCCGTTGATCTGTAACTAGTGTAAGAGAAGCTTATATTAGATCTAAACAGGGACTGGCAGATCACAAAGATACATTGGGTGCACCACTCTGTCCCTGTCGGTCAGTGTTTATAATGCTTTGTAGAAATCCTGTAATATTTTCTGGAACTAAGGGTAGTTCAAACTATCTTTAATGCAGAGTTAAATAGTTTGGTTATTTTTTTTCAGGCATTATGACGACAAAGCTGCTGAGGTTGCACAAGGTTTTTGGAATTGTCCATGTGTTCCAATGAGAGAAAGGTAAAACATGCACTTATATCATCGGGAAGTTTCTTTTTTGCGATCTGGAATTCATGAAACTATACACCTGCCTGTCTGCATTATACTCATAAAACGTTTCTCACTTGATTTATTGACTGACTGAATGATCTGCATTAGGATGATTCAGCTTTATAAGTCTTTATTCTTATGAAAGAGGAAGGAAAAGAGAAGGGGTGGGAGATTATGGCTATCCATCTTAATTTGTTTCTTAAGATGATGGGTGTTGAGACTTACAGTACTAGGTTATTAAACTTGGAAGTAAATACCTTGAGCCCTATACTGATTTTTCGCGGATGAAGAGCAGGGTTTAAATCTTTCATAAACTGACTTTGTTAGAACTATTTCCCATGGTCATCTGGTAAACTAAATTTGTAGTCGATTAGTCACACATAACCAAGCTGTTCACTCTAGCGAGTAAGGTTGTTTTTGTGTTATATTCGATACCAGGAATATGGTAATAACAGGCTGACTTTCAAAGCCAGCCCTTGGATATTTGAATGTTTCAGGAAGCAAGGAAATGTAGATGATAGGACGCTGTTACTCATTTTATTCCATATCAGGCACATCTGGTCTGAAAATTAATTTTTTCTTGGCAGGAAAGAGTGTCACTGCATGCTTTTCCTAACTCCTGAGAACGACTTTGCAGGCAACGACCAGGTAATTGTTATCAGTTACTCTTGATCTGAAAGATTATACTGATACTTCTAATTCATGGAAAGAATCTCAATGTAATGACTACAGACTGAATTGACAATTCAATTTACCGGAAGGTGTATGATTTATTGTTAGACACTATTACCACTCCAGAGTGCAACTGAATTTTCTTATTAATTTCATTAACTAGCTCCACTCCTTGAACACTATGCTAAATGTGAAGTTGGGAATTATCACAAGATCTTTTAGCCGGAAAAAATTGAATATTAAGCTAAACTGCAAATATTATGGCTATTTACTTTGCATATGTTGCAACTATCCATTGTTTCTGTTGTGAATAATTTTTTCCTGCTCTCGTTGGATTTCTGATTCCTCTTTTCTGTAGGTGATCACCATGGAAGATATCAAGGCAACAACAGCAAACATGTAACCTTCAATTTCCACTTGTTAATTTCATTCACAGTACTTCAAACTGTGCTATGATGATTGAAAGGGGTGGAAATATACAAGTATAATTATGTATGTAACACTACATGCTGATGAGATCATGAATTGTTGTGCCATATCTGCCACTGACAAATGATCACATTTCTTTTCCATGGTATTTGTAACATGTAAGTTTTGACCCAACAATATTTGGTTTGGCTTAGTTTGGCTAGAACCATACATGGATGGGTGTTTTGGGAGAGGATCCAATGCTGGAGTTGTTAGTGGTGAAAAATATGAGTTAGAAGAAAGAACCCTATATGGATAGGTATTCCTTTTCGGGTTAGAGGTTTGAATTTGCATACTCCATACCTTTTCCTTTTACTTTCGAGATTGGAAAAGTAATAATAATTATAATCAATAAAGATGTTGCTATTCCC

mRNA sequence

TCAATTATCTTCGTTTCAGAAAATTAATTGCAATTATAAGCCCTTTACTCCCACAATATTTAACAACAAAAAGAAATAACTATGAACAAATCCACAGATTATCCTTCTTCTTCCTCCTCCCAATTTACAGATTTCTTCTCTTCCTCGTTTTCCGTTGCTTTGTCCTAATGATTCTACAAGCTTCGTCGTTCAATATCGCCGTTCCACTCTCCGGTTCTTCCACCGGACGTTCCCGTCACAGCCATGTCGTTCGAGCTCAAGGGGAACCGTCCGACAAGTCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGCAAGTCAGGAACGTATTTCTGTGTGGACAAGGGGGTTACTGCTGTTGTAATCAAGTTACTCATTCTCAAATTGAGCAATTATTTATTAGTTAGTGAAGCAATAGAGGAGAAGAAACTTCGTCTGTGCTCCCGCAGTGTAAGAGAAGCTTATATTAGATCTAAACAGGGACTGGCAGATCACAAAGATACATTGGGTGCACCACTCTGTCCCTGTCGGCATTATGACGACAAAGCTGCTGAGGTTGCACAAGGTTTTTGGAATTGTCCATGTGTTCCAATGAGAGAAAGGAAAGAGTGTCACTGCATGCTTTTCCTAACTCCTGAGAACGACTTTGCAGGCAACGACCAGGTGATCACCATGGAAGATATCAAGGCAACAACAGCAAACATGTAACCTTCAATTTCCACTTGTTAATTTCATTCACAGTACTTCAAACTGTGCTATGATGATTGAAAGGGGTGGAAATATACAAGTATAATTATGTATGTAACACTACATGCTGATGAGATCATGAATTGTTGTGCCATATCTGCCACTGACAAATGATCACATTTCTTTTCCATGGTATTTGTAACATGTAAGTTTTGACCCAACAATATTTGGTTTGGCTTAGTTTGGCTAGAACCATACATGGATGGGTGTTTTGGGAGAGGATCCAATGCTGGAGTTGTTAGTGGTGAAAAATATGAGTTAGAAGAAAGAACCCTATATGGATAGGTATTCCTTTTCGGGTTAGAGGTTTGAATTTGCATACTCCATACCTTTTCCTTTTACTTTCGAGATTGGAAAAGTAATAATAATTATAATCAATAAAGATGTTGCTATTCCC

Coding sequence (CDS)

ATGATTCTACAAGCTTCGTCGTTCAATATCGCCGTTCCACTCTCCGGTTCTTCCACCGGACGTTCCCGTCACAGCCATGTCGTTCGAGCTCAAGGGGAACCGTCCGACAAGTCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGCAAGTCAGGAACGTATTTCTGTGTGGACAAGGGGGTTACTGCTGTTGTAATCAAGTTACTCATTCTCAAATTGAGCAATTATTTATTAGTTAGTGAAGCAATAGAGGAGAAGAAACTTCGTCTGTGCTCCCGCAGTGTAAGAGAAGCTTATATTAGATCTAAACAGGGACTGGCAGATCACAAAGATACATTGGGTGCACCACTCTGTCCCTGTCGGCATTATGACGACAAAGCTGCTGAGGTTGCACAAGGTTTTTGGAATTGTCCATGTGTTCCAATGAGAGAAAGGAAAGAGTGTCACTGCATGCTTTTCCTAACTCCTGAGAACGACTTTGCAGGCAACGACCAGGTGATCACCATGGAAGATATCAAGGCAACAACAGCAAACATGTAA

Protein sequence

MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTANM

Homology

[Close]

BLAST of Carg04414 vs. NCBI nr
Match: KAG7033139.1 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180

Query: 181 M 182
           M
Sbjct: 181 M 181

[Close]

BLAST of Carg04414 vs. NCBI nr
Match: XP_022923802.1 (ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 144/181 (79.56%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. NCBI nr
Match: KAG6602457.1 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 144/181 (79.56%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. NCBI nr
Match: XP_022989856.1 (ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 3.7e-72
Identity = 143/181 (79.01%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVIT+EDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITLEDIKATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. NCBI nr
Match: XP_023511536.1 (ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.7e-70
Identity = 141/181 (77.90%), Postives = 141/181 (77.90%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNI VPLSGSS  RSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIVVPLSGSSRVRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. ExPASy Swiss-Prot
Match: O49856 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max OX=3847 GN=FTRC PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-60
Identity = 118/181 (65.19%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           M  QAS+F +AVP   +   R R+  VVRAQ EPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MTTQASTFAVAVPSVATPFRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVT+VVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTSVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTP+NDFAGN+Q IT+++IK +TAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. ExPASy Swiss-Prot
Match: Q9SJ89 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTRC PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-52
Identity = 109/183 (59.56%), Postives = 120/183 (65.57%), Query Frame = 0


Query: 1   MILQA--SSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFC 60
           M LQA   SF       G +   S    V+RA+ EPS+KSVEIMRKFSEQYAR+SGTYFC
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRRFVIRAKTEPSEKSVEIMRKFSEQYARRSGTYFC 60

Query: 61  VDKGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAP 120
           VDKGVT+VVIK                                     GLA+HKD+ GAP
Sbjct: 61  VDKGVTSVVIK-------------------------------------GLAEHKDSYGAP 120

Query: 121 LCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATT 180
           LCPCRHYDDKAAEV QGFWNCPCVPMRERKECHCMLFLTP+NDFAG DQ IT ++IK TT
Sbjct: 121 LCPCRHYDDKAAEVGQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQTITSDEIKETT 146

Query: 181 ANM 182
           ANM
Sbjct: 181 ANM 146

[Close]

BLAST of Carg04414 vs. ExPASy Swiss-Prot
Match: P41348 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=FTRC PE=1 SV=2)

HSP 1 Score: 204.9 bits (520), Expect = 7.6e-52
Identity = 99/176 (56.25%), Postives = 116/176 (65.91%), Query Frame = 0


Query: 6   SSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTA 65
           +S   + P+S  +    R S V+RAQ +PSDKS+E+MRKFSEQ+ RKS TYFCVDK VTA
Sbjct: 6   ASIAYSFPISSPAASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTA 65

Query: 66  VVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLCPCRHY 125
           VVIK                                     GLADH+DTLGAPLCPCRHY
Sbjct: 66  VVIK-------------------------------------GLADHRDTLGAPLCPCRHY 125

Query: 126 DDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTANM 182
           DDK AE  QGFWNCPCVPMRERKECHCMLFLTP+NDFAG +Q IT+++I+  T+NM
Sbjct: 126 DDKEAEAKQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKEQTITLDEIREVTSNM 144

[Close]

BLAST of Carg04414 vs. ExPASy Swiss-Prot
Match: P41349 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.4e-51
Identity = 107/183 (58.47%), Postives = 121/183 (66.12%), Query Frame = 0


Query: 3   LQASSFNIAVPLSGSSTGRSRHSH----VVRAQGEPSDKSVEIMRKFSEQYARKSGTYFC 62
           LQAS+       S S+T   R +H    V+ ++ EPSDKSVEIMRKFSEQYARKSGTYFC
Sbjct: 4   LQASTSYSFFSKSSSAT-LQRRTHRPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFC 63

Query: 63  VDKGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAP 122
           VDKGVT+VVIK                                     GLA+HKD+LGAP
Sbjct: 64  VDKGVTSVVIK-------------------------------------GLAEHKDSLGAP 123

Query: 123 LCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATT 182
           LCPCR+YDDKAAE  QGFWNCPCVPMRERKECHCMLFLTPENDFAG DQ I +++I+  T
Sbjct: 124 LCPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQTIGLDEIREVT 148

[Close]

BLAST of Carg04414 vs. ExPASy Swiss-Prot
Match: P41347 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays OX=4577 GN=FTRC PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-49
Identity = 102/171 (59.65%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 13  PLSGSSTGRSRHSHVVRAQG----EPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVI 72
           PLS ++ GR R    VRAQ       +DKSVE+MRKFSEQYAR+S T+FC DK VTAVVI
Sbjct: 18  PLSTATRGRPRRC-AVRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVI 77

Query: 73  KLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLCPCRHYDDK 132
           K                                     GLADH+DTLGAPLCPCRHYDDK
Sbjct: 78  K-------------------------------------GLADHRDTLGAPLCPCRHYDDK 137

Query: 133 AAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTA 180
           AAEVAQGFWNCPCVPMRERKECHCMLFLTP+NDFAG DQVI+ E+IK  T+
Sbjct: 138 AAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQVISFEEIKEATS 150

[Close]

BLAST of Carg04414 vs. ExPASy TrEMBL
Match: A0A6J1E756 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431406 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.1e-73
Identity = 144/181 (79.56%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. ExPASy TrEMBL
Match: A0A6J1JLC1 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486921 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72
Identity = 143/181 (79.01%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVIT+EDIKATTAN
Sbjct: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITLEDIKATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. ExPASy TrEMBL
Match: A0A5A7T273 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00370 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.0e-67
Identity = 134/181 (74.03%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSS G SRH HVVRAQ EPS+KSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDK AEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQ I++EDI+ATTAN
Sbjct: 121 PCRHYDDKPAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQAISLEDIRATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. ExPASy TrEMBL
Match: A0A1S3C819 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498045 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.0e-67
Identity = 134/181 (74.03%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPLSGSS G SRH HVVRAQ EPS+KSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDK AEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQ I++EDI+ATTAN
Sbjct: 121 PCRHYDDKPAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQAISLEDIRATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. ExPASy TrEMBL
Match: A0A0A0KTZ8 (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G631540 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.5e-66
Identity = 133/181 (73.48%), Postives = 137/181 (75.69%), Query Frame = 0


Query: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60
           MILQASSFNIAVPL GSS G SRH HVVRAQ EPS+KSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLYGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAPLC 120
           KGVTAVVIK                                     GLADHKDTLGAPLC
Sbjct: 61  KGVTAVVIK-------------------------------------GLADHKDTLGAPLC 120

Query: 121 PCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATTAN 180
           PCRHYDDK AEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQ I++EDI+ATTAN
Sbjct: 121 PCRHYDDKPAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQAISLEDIRATTAN 144

Query: 181 M 182
           M
Sbjct: 181 M 144

[Close]

BLAST of Carg04414 vs. TAIR 10
Match: AT2G04700.1 (ferredoxin thioredoxin reductase catalytic beta chain family protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-53
Identity = 109/183 (59.56%), Postives = 120/183 (65.57%), Query Frame = 0


Query: 1   MILQA--SSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFC 60
           M LQA   SF       G +   S    V+RA+ EPS+KSVEIMRKFSEQYAR+SGTYFC
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRRFVIRAKTEPSEKSVEIMRKFSEQYARRSGTYFC 60

Query: 61  VDKGVTAVVIKLLILKLSNYLLVSEAIEEKKLRLCSRSVREAYIRSKQGLADHKDTLGAP 120
           VDKGVT+VVIK                                     GLA+HKD+ GAP
Sbjct: 61  VDKGVTSVVIK-------------------------------------GLAEHKDSYGAP 120

Query: 121 LCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQVITMEDIKATT 180
           LCPCRHYDDKAAEV QGFWNCPCVPMRERKECHCMLFLTP+NDFAG DQ IT ++IK TT
Sbjct: 121 LCPCRHYDDKAAEVGQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQTITSDEIKETT 146

Query: 181 ANM 182
           ANM
Sbjct: 181 ANM 146

The following BLAST results are available for this feature:

BLAST of Carg04414 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033139.1	1.5e-97	100.00	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Cucurbita argyr...	[more]
XP_022923802.1	1.7e-72	79.56	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita ...	[more]
KAG6602457.1	1.7e-72	79.56	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic, partial [Cucurb...	[more]
XP_022989856.1	3.7e-72	79.01	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita ...	[more]
XP_023511536.1	2.7e-70	77.90	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita ...	[more]

BLAST of Carg04414 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49856	1.5e-60	65.19	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max O...	[more]
Q9SJ89	1.5e-52	59.56	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis t...	[more]
P41348	7.6e-52	56.25	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oler...	[more]
P41349	8.4e-51	58.47	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oler...	[more]
P41347	4.6e-49	59.65	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays OX=4...	[more]

BLAST of Carg04414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E756	8.1e-73	79.56	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1JLC1	1.8e-72	79.01	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucurbita max...	[more]
A0A5A7T273	3.0e-67	74.03	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucumis melo ...	[more]
A0A1S3C819	3.0e-67	74.03	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucumis melo ...	[more]
A0A0A0KTZ8	1.5e-66	73.48	Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Cucumis sativ...	[more]

BLAST of Carg04414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04700.1	1.1e-53	59.56	ferredoxin thioredoxin reductase catalytic beta chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004209	Ferredoxin thioredoxin reductase catalytic beta subunit	PFAM	PF02943	FeThRed_B	coord: 105..175 e-value: 1.1E-27 score: 96.0 coord: 39..72 e-value: 1.7E-5 score: 24.8
IPR004209	Ferredoxin thioredoxin reductase catalytic beta subunit	PANTHER	PTHR35113	FERREDOXIN-THIOREDOXIN REDUCTASE CATALYTIC CHAIN, CHLOROPLASTIC	coord: 17..177
IPR036644	Ferredoxin thioredoxin reductase catalytic beta subunit superfamily	GENE3D	3.90.460.10	Ferredoxin thioredoxin reductase catalytic beta subunit	coord: 30..79 e-value: 1.9E-9 score: 39.3 coord: 80..181 e-value: 1.9E-34 score: 119.9
IPR036644	Ferredoxin thioredoxin reductase catalytic beta subunit superfamily	SUPERFAMILY	57662	Ferredoxin thioredoxin reductase (FTR), catalytic beta chain	coord: 99..178
IPR036644	Ferredoxin thioredoxin reductase catalytic beta subunit superfamily	SUPERFAMILY	57662	Ferredoxin thioredoxin reductase (FTR), catalytic beta chain	coord: 36..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04414-RA	Carg04414-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0103012	ferredoxin-thioredoxin reductase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors