Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGGGCGGAGGAAGGTTGCAGGGAATCGAAGCAAGGAGAGGTTGAAGATAAAGATTGTACAAGCAGAGGTGTGTTGTCAGCTGGAACGGCATTGTTAATGGCAGCTTGTTTGAAGAGAGCTGTGGTTCTGTTCTTCTTGGTTGAGCAATGGCGGATCTGGGTGTTCCTTGCGTTGAATCTCATCCTTGTAACAATCTTCTTCACTTCCAGTCCTGCAAGTTACAGTGAAAGCCAAACCCAAGAGCCGACGAAGAAGAAGAAGATTAGAAGCAGCGAGCCTGAAAAAGTGGAAGAAGTTGAGATCAAACAGCAGGAGATGGATAAAGAAGAGGAAATTGAAGAAGATGAAGAAGAAGAGGTAATTGGGTTGTCGAAAGAGGAGTTGAATGAGAGAGTTGAAGCTTTCATTGTGATGTTCAAGAAGCAATTGATTTCAGATGCGAGAAAAGTGGGAAGTAGACGAACCCCATTGAGCTATAAGACTCAATAG
mRNA sequence
ATGTGGAGGGCGGAGGAAGGTTGCAGGGAATCGAAGCAAGGAGAGGTTGAAGATAAAGATTGTACAAGCAGAGGTGTGTTGTCAGCTGGAACGGCATTGTTAATGGCAGCTTGTTTGAAGAGAGCTGTGGTTCTGTTCTTCTTGGTTGAGCAATGGCGGATCTGGGTGTTCCTTGCGTTGAATCTCATCCTTGTAACAATCTTCTTCACTTCCAGTCCTGCAAGTTACAGTGAAAGCCAAACCCAAGAGCCGACGAAGAAGAAGAAGATTAGAAGCAGCGAGCCTGAAAAAGTGGAAGAAGTTGAGATCAAACAGCAGGAGATGGATAAAGAAGAGGAAATTGAAGAAGATGAAGAAGAAGAGGTAATTGGGTTGTCGAAAGAGGAGTTGAATGAGAGAGTTGAAGCTTTCATTGTGATGTTCAAGAAGCAATTGATTTCAGATGCGAGAAAAGTGGGAAGTAGACGAACCCCATTGAGCTATAAGACTCAATAG
Coding sequence (CDS)
ATGTGGAGGGCGGAGGAAGGTTGCAGGGAATCGAAGCAAGGAGAGGTTGAAGATAAAGATTGTACAAGCAGAGGTGTGTTGTCAGCTGGAACGGCATTGTTAATGGCAGCTTGTTTGAAGAGAGCTGTGGTTCTGTTCTTCTTGGTTGAGCAATGGCGGATCTGGGTGTTCCTTGCGTTGAATCTCATCCTTGTAACAATCTTCTTCACTTCCAGTCCTGCAAGTTACAGTGAAAGCCAAACCCAAGAGCCGACGAAGAAGAAGAAGATTAGAAGCAGCGAGCCTGAAAAAGTGGAAGAAGTTGAGATCAAACAGCAGGAGATGGATAAAGAAGAGGAAATTGAAGAAGATGAAGAAGAAGAGGTAATTGGGTTGTCGAAAGAGGAGTTGAATGAGAGAGTTGAAGCTTTCATTGTGATGTTCAAGAAGCAATTGATTTCAGATGCGAGAAAAGTGGGAAGTAGACGAACCCCATTGAGCTATAAGACTCAATAG
Protein sequence
MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLALNLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEEEVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ
Homology
BLAST of Carg04410 vs. NCBI nr
Match:
XP_022959957.1 (uncharacterized protein LOC111460852 [Cucurbita moschata] >KAG6602469.1 hypothetical protein SDJN03_07702, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033143.1 hypothetical protein SDJN02_07196, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL
Sbjct: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
Query: 61 NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE 120
NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE
Sbjct: 61 NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE 120
Query: 121 EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ 165
EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ
Sbjct: 121 EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ 164
BLAST of Carg04410 vs. NCBI nr
Match:
XP_023512615.1 (uncharacterized protein LOC111777308 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 277.3 bits (708), Expect = 8.4e-71
Identity = 155/162 (95.68%), Postives = 155/162 (95.68%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MWRAEEGCRESKQGEVEDKDC SRGVLSAGT LLMAACLKRAVVLFFLVEQWRIWVFLAL
Sbjct: 1 MWRAEEGCRESKQGEVEDKDCISRGVLSAGTTLLMAACLKRAVVLFFLVEQWRIWVFLAL 60
Query: 61 NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE 120
NLILVTIFFTSSPASY ESQT EP KKKKIRSSEPEKVEEVEIKQQEMDKEEE EEDEEE
Sbjct: 61 NLILVTIFFTSSPASYGESQTPEPMKKKKIRSSEPEKVEEVEIKQQEMDKEEECEEDEEE 120
Query: 121 EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYK 163
E IGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYK
Sbjct: 121 EEIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYK 162
BLAST of Carg04410 vs. NCBI nr
Match:
KAG6578611.1 (hypothetical protein SDJN03_23059, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 131/181 (72.38%), Postives = 141/181 (77.90%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MWRAEE RESKQ EVEDKD +LSAGTALLMAACLKRAVVL FLVEQWRIWVFL L
Sbjct: 1 MWRAEESYRESKQAEVEDKDSIGTALLSAGTALLMAACLKRAVVL-FLVEQWRIWVFLLL 60
Query: 61 NLILVTIFFT---SSPASYSESQTQEPT---KKKKIRS---SEPEKVEEVEIKQQEMDKE 120
NLILV IFFT SSP+SYSESQTQE K+KKI + E EKVE++EIK QE +KE
Sbjct: 61 NLILVAIFFTSSPSSPSSYSESQTQEANAKIKQKKIENRECKEAEKVEKLEIKHQEREKE 120
Query: 121 --------EEIEEDEEEEVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKT 165
EE EE+EEEE IGLSKEELNERVEAFIVMFKKQLISDAR+ G+RRTPLSY
Sbjct: 121 EEEEEELPEEEEEEEEEEEIGLSKEELNERVEAFIVMFKKQLISDARRGGNRRTPLSYNP 180
BLAST of Carg04410 vs. NCBI nr
Match:
KAG7016160.1 (hypothetical protein SDJN02_21264, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 198.7 bits (504), Expect = 3.8e-47
Identity = 131/183 (71.58%), Postives = 141/183 (77.05%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MWRAEE RESKQ EVEDKD +LSAGTALLMAACLKRAVVL FLVEQWRIWVFL L
Sbjct: 1 MWRAEESYRESKQAEVEDKDSIGTALLSAGTALLMAACLKRAVVL-FLVEQWRIWVFLLL 60
Query: 61 NLILVTIFFT---SSPASYSESQTQEPT---KKKKIRS---SEPEKVEEVEIKQQEMDK- 120
NLILV IFFT SSP+SYSESQTQE K+KKI + E EKVE++EIK QE +K
Sbjct: 61 NLILVAIFFTSSPSSPSSYSESQTQEANAKIKQKKIENRECKEAEKVEKLEIKHQEREKE 120
Query: 121 ---------EEEIEEDEEEEVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSY 165
EEE EE+EEEE IGLSKEELNERVEAFIVMFKKQLISDAR+ G+RRTPLSY
Sbjct: 121 EEEEEELPEEEEEEEEEEEEEIGLSKEELNERVEAFIVMFKKQLISDARRGGNRRTPLSY 180
BLAST of Carg04410 vs. NCBI nr
Match:
XP_038890929.1 (uncharacterized protein LOC120080357 [Benincasa hispida])
HSP 1 Score: 194.9 bits (494), Expect = 5.5e-46
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MWRAEE RE KQGEVEDKD +LSAGTALLMAACLK+AVV+ FLVEQWRIWVFL L
Sbjct: 1 MWRAEESYRELKQGEVEDKDSIGNVLLSAGTALLMAACLKKAVVM-FLVEQWRIWVFLVL 60
Query: 61 NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEI-EEDEE 120
NLILV IFFTSSPASYSE+Q +E K+KKI++ E ++ E+ EIK++E +EEEI EE+EE
Sbjct: 61 NLILVAIFFTSSPASYSENQNEE-AKQKKIKNRELKEAEKTEIKEEEEIEEEEIEEEEEE 120
Query: 121 EEVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSY 162
EE IGLSKEELNERVEAFIVMFKKQLISDARK +R TP SY
Sbjct: 121 EEEIGLSKEELNERVEAFIVMFKKQLISDARKGRNRSTPFSY 160
BLAST of Carg04410 vs. ExPASy TrEMBL
Match:
A0A6J1H605 (uncharacterized protein LOC111460852 OS=Cucurbita moschata OX=3662 GN=LOC111460852 PE=4 SV=1)
HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL
Sbjct: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
Query: 61 NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE 120
NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE
Sbjct: 61 NLILVTIFFTSSPASYSESQTQEPTKKKKIRSSEPEKVEEVEIKQQEMDKEEEIEEDEEE 120
Query: 121 EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ 165
EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ
Sbjct: 121 EVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ 164
BLAST of Carg04410 vs. ExPASy TrEMBL
Match:
A0A6J1JR04 (uncharacterized protein LOC111487056 OS=Cucurbita maxima OX=3661 GN=LOC111487056 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 7.7e-46
Identity = 115/129 (89.15%), Postives = 119/129 (92.25%), Query Frame = 0
Query: 35 MAACLKRAVVLFFLVEQWRIWVFLALNLILVTIFFTSSPASYSESQTQEPTKKKKIRSSE 94
MAACLKRAVVLFFLVEQWRIWVFL LNLILVTIFFTSSPASYSE+Q QEPTKKKKIR+SE
Sbjct: 1 MAACLKRAVVLFFLVEQWRIWVFLVLNLILVTIFFTSSPASYSENQIQEPTKKKKIRNSE 60
Query: 95 PEKVEEVEIKQQEMDKEEEIEEDEEEEVIGLSKE------ELNERVEAFIVMFKKQLISD 154
PEKVEEVEIKQQE+ KEEEIEEDEEEE IGLSKE ELNERVEAFIVMFKKQLISD
Sbjct: 61 PEKVEEVEIKQQEIGKEEEIEEDEEEEEIGLSKEELNERVELNERVEAFIVMFKKQLISD 120
Query: 155 ARKVGSRRT 158
ARKVG+RRT
Sbjct: 121 ARKVGNRRT 129
BLAST of Carg04410 vs. ExPASy TrEMBL
Match:
A0A6J1C149 (coiled-coil domain-containing glutamate-rich protein 1 OS=Momordica charantia OX=3673 GN=LOC111006473 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 5.5e-44
Identity = 121/179 (67.60%), Postives = 136/179 (75.98%), Query Frame = 0
Query: 1 MWRAEEGCRESKQGEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLAL 60
MW+AEE RE+KQGEVEDKD +LSAGTALLMAACLKRAVVL FLVEQWR+WVFL L
Sbjct: 1 MWKAEENYRETKQGEVEDKDSMGTVLLSAGTALLMAACLKRAVVL-FLVEQWRVWVFLVL 60
Query: 61 NLILVTIFFTSSPASYSESQTQEPTKK-KKIRSSE----PEKVEEVEIKQQEMDKEEEIE 120
NLI+V IFFTSSP++Y ESQ KK KKI+ E EKVE+VE K QEMDKEEEIE
Sbjct: 61 NLIVVAIFFTSSPSNYRESQDPSVGKKQKKIKDRECKVAEEKVEKVEAKPQEMDKEEEIE 120
Query: 121 EDEEEEV----------IGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSYKTQ 165
E+E EE +GLSKEELNERVEAFIVMFK+QLI DARK G+ TPLSY ++
Sbjct: 121 EEEIEEEEEEEEEEDADVGLSKEELNERVEAFIVMFKQQLILDARKGGNSHTPLSYNSR 178
BLAST of Carg04410 vs. ExPASy TrEMBL
Match:
A0A1S3C9Q4 (ABC transporter F family member 4 OS=Cucumis melo OX=3656 GN=LOC103498035 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 5.0e-37
Identity = 116/179 (64.80%), Postives = 130/179 (72.63%), Query Frame = 0
Query: 1 MWRAEEGCRESKQ-GEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLA 60
MWR EE RE KQ GE EDKD +LSAGTALLMA CLK+AVV+ FLVEQWRIWVFLA
Sbjct: 1 MWRTEEINRELKQGGEFEDKDSIRNALLSAGTALLMATCLKKAVVM-FLVEQWRIWVFLA 60
Query: 61 LNLILVTIFFTSSPASYSESQTQE---PTKKKKIRSSE------------PEKVEEVEIK 120
LNLILV IFFTS+PA+YSE+Q QE TK+KK + E +K E E K
Sbjct: 61 LNLILVAIFFTSNPANYSETQKQETSGKTKQKKTENIELKEAKKEEDKTKQKKTENREFK 120
Query: 121 Q--QEMDKEEEIEEDEEEEVIGLSKEELNERVEAFIVMFKKQLISDARKVGSRRTPLSY 162
+ +E D+ EE EE+EEEE IGLSKEELNERVEAFIVMFKKQLISDARK G+R LSY
Sbjct: 121 EARKEEDEIEEEEEEEEEEEIGLSKEELNERVEAFIVMFKKQLISDARKGGNR---LSY 175
BLAST of Carg04410 vs. ExPASy TrEMBL
Match:
A0A0A0KVE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633200 PE=4 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 105/178 (58.99%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MWRAEEGCRESKQ-GEVEDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLA 60
MWR EE RE KQ GE EDKD +LSAGTALLMA CLK+ V+ FLVEQWRIWVFL
Sbjct: 1 MWRTEEINRELKQGGEFEDKDSIRNALLSAGTALLMATCLKKLAVVMFLVEQWRIWVFLV 60
Query: 61 LNLILVTIFFTS---SPASYSESQTQEPTKKKKIRSSEPEKVEEVE-------------- 120
LNLILV IFFTS +PA+YSE+Q QE + K K++ E ++EE +
Sbjct: 61 LNLILVAIFFTSNPANPANYSETQKQETSGKTKLKKIEKRELEEAKKEEDKTKQKKIENR 120
Query: 121 -----IKQQEMDKEEEIEEDEEEEVIGLSKEELNERVEAFIVMFKKQLISDARKVGSR 156
IK+++ KEE+ E+EEEE I LSKEELNERVEAFIVMFKKQLISDARK G+R
Sbjct: 121 EIKEAIKEEDEIKEEDEIEEEEEEEIELSKEELNERVEAFIVMFKKQLISDARKGGNR 178
BLAST of Carg04410 vs. TAIR 10
Match:
AT3G28420.1 (Putative membrane lipoprotein )
HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 60/187 (32.09%), Postives = 88/187 (47.06%), Query Frame = 0
Query: 17 EDKDCTSRGVLSAGTALLMAACLKRAVVLFFLVEQWRIWVFLALNLILVTIFFTSSPASY 76
E+ CTS L +L ACLK + +L+EQWR VFL LN++L+ ++FTS+ +
Sbjct: 11 EENMCTS---LLTAVVVLSMACLKHFSSVSYLIEQWRSLVFLILNVVLLAVYFTSTRPNL 70
Query: 77 SES---------------QTQEPTKKKKIR-------------SSEPEKVEEVEIKQQEM 136
S + + KKKK R EP++V + + +E
Sbjct: 71 GRSHDFKTRRGGRLRMMREKKNKIKKKKTRVVVEPACFDQGFLLVEPKEVIKKCVLVEET 130
Query: 137 DK---------------EEEIE---EDEEEEVIGLSKEELNERVEAFIVMFKKQLISDAR 158
+ ++EIE E++E E LS EELNERVEAFI F++ L+ DAR
Sbjct: 131 KRVCPKFEETVKDCLFHKKEIEYNGEEDEFEPGRLSNEELNERVEAFITTFRQHLVLDAR 190
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022959957.1 | 3.0e-76 | 100.00 | uncharacterized protein LOC111460852 [Cucurbita moschata] >KAG6602469.1 hypothet... | [more] |
XP_023512615.1 | 8.4e-71 | 95.68 | uncharacterized protein LOC111777308 [Cucurbita pepo subsp. pepo] | [more] |
KAG6578611.1 | 2.2e-47 | 72.38 | hypothetical protein SDJN03_23059, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7016160.1 | 3.8e-47 | 71.58 | hypothetical protein SDJN02_21264, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_038890929.1 | 5.5e-46 | 74.07 | uncharacterized protein LOC120080357 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1H605 | 1.4e-76 | 100.00 | uncharacterized protein LOC111460852 OS=Cucurbita moschata OX=3662 GN=LOC1114608... | [more] |
A0A6J1JR04 | 7.7e-46 | 89.15 | uncharacterized protein LOC111487056 OS=Cucurbita maxima OX=3661 GN=LOC111487056... | [more] |
A0A6J1C149 | 5.5e-44 | 67.60 | coiled-coil domain-containing glutamate-rich protein 1 OS=Momordica charantia OX... | [more] |
A0A1S3C9Q4 | 5.0e-37 | 64.80 | ABC transporter F family member 4 OS=Cucumis melo OX=3656 GN=LOC103498035 PE=4 S... | [more] |
A0A0A0KVE3 | 1.4e-34 | 58.99 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633200 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G28420.1 | 3.4e-06 | 32.09 | Putative membrane lipoprotein | [more] |