Carg04406 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04406
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	Carg_Chr04: 20572247 .. 20573744 (-)
RNA-Seq Expression	Carg04406
Synteny	Carg04406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCCACGCGAACACAAAGTACAGTTTCACTGATACCGTCTTTATATACAAACAAAACAGCCTTACAACCCGCCAATACCTCAGCCAACCGAATTAGTTTTCCATCTCTCTTCTTTCTTCTTTCTTAGTCTATAGTTATCCATCTTCACTTCCATGCCCAGAAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCATTGTTGGTCAATTGGAAGCTGTGAGTTTAGGAAAAAGGTTTGGGTGTAATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGTCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACGCAATTCTACTTGATCTAATATATTAAAATTGCAGATATGCTTGCTTATTTTCTTTTTCTTCTGCTCTTTGCAAGTATCTTCTGAACTATTCGTCTGTTCTCCTTCCTTTCTTTTATATTTTTTATCTCCTTAATTTTGTGGGTTTTGACGCTTTGGTGTAGAATTCTTTAAATTTTTGTAATCTTGAGGACAGAAATTTGACCATTGAATTTTGTCCCTAAAAAAAGGCAAATTAACGCGTCTGAAGGTGACCACCCTACTTCAATTAGAAGAAAGATAAGGAACTGAGAGTTCTATTACCATTAGTGAATTTAGGAAGCTACTCTATTGCCTCTCATCGTTTCCAGTTGTCGTTATTAGTTTCCTTGTTTACTACAAAATTGTGAACAGAATTCATTCAAACCCCCGTCATTTGATCATTTTAGAATAATGTATTGCTCTGCCTCTAACCAGTGTGCTTTCTTTTCTTTTTCTTTCATTGTTTGGTATTAACAACTTGAGTTTGTTAAAGAGATGCAACAAACTATTTCAATTGAGAAGTGTTGATATTGGAGATAGTCTCACTTCTTTCCCCCCATAAGAGAAAAAAGAACAAAAGTTCTTTTTTATCACTCTTTCTCTTATTTTTATGAGCTGTTAAAGGCATTGGGGCAAGAACTTGACCACTTTAGTTCATAAGCTTGACGGATTACATAAAATTGTTTCTCTTTGCAACAAAACCATTGCAGCATGATACTCTCTGTCTTTATGACATGGGCTGATGATTTTCTTTTTTTGCACAAAATGTGAATCTCAGGAGAGTGGAGAATTCCAAACAACCACCAGTTCGAGCCTAAGCAAATCAAGGAGATAGATCAGCTGCAGAAAAGGCTCAGAAATGAACAGTTAATTTTTTTTTTTTACCTGTAAGTAAATGGTTTTTATTTTTATTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGG

mRNA sequence

TCTTCCCACGCGAACACAAAGTACAGTTTCACTGATACCGTCTTTATATACAAACAAAACAGCCTTACAACCCGCCAATACCTCAGCCAACCGAATTAGTTTTCCATCTCTCTTCTTTCTTCTTTCTTAGTCTATAGTTATCCATCTTCACTTCCATGCCCAGAAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCATTGTTGGTCAATTGGAAGCTGTGAGTTTAGGAAAAAGGTTTGGGTGTAATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGTCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCCAAACAACCACCAGTTCGAGCCTAAGCAAATCAAGGAGATAGATCAGCTGCAGAAAAGGCTCAGAAATGAACAGTTAATTTTTTTTTTTTACCTGTAAGTAAATGGTTTTTATTTTTATTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGG

Coding sequence (CDS)

ATGGAACCTAACTGTAGATTTTTTAGGCTTCTGTTTGGAGTTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATAGGAGGGATTGATAATGCTAGTCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGGTGATTGGAAGCGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCCAAACAACCACCAGTTCGAGCCTAA

Protein sequence

MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPVRA

Homology

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: KAG7033147.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.9 bits (494), Expect = 3.0e-46
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60
          MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF
Sbjct: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 91
          YSVSKRRVPNGPDPIHNRRVENSKQPPVRA
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 90

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: KAG6578608.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.5 bits (423), Expect = 5.1e-38
Identity = 76/90 (84.44%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60
          M  NCRF + LFG FLFLG+IWFSFIG IDNASPASRRATD+QWK+IG  KHVFHWHSDF
Sbjct: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 91
          YSVSKRRVPNGPDPIHNRRV NSKQPP+RA
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 90

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: KGN52425.1 (hypothetical protein Csa_008367 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60
          ME  C F + LFG FLFLGIIWFSFIG IDNAS ASRR TDMQWK+IG EKH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVR 90
          YSVSKRRVPNGPDPIHNRRVENS+QPP+R
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: KAG6602472.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 25  FIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSK 84
           + GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSK
Sbjct: 65  YFGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSK 124

Query: 85  QPPVRA 91
           QPPVRA
Sbjct: 125 QPPVRA 130

[Close]

BLAST of Carg04406 vs. NCBI nr
Match: XP_022961025.1 (uncharacterized protein LOC111461653 isoform X1 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 5.1e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 27  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 86
           GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PVRA 91
           PVRA
Sbjct: 110 PVRA 113

[Close]

BLAST of Carg04406 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-09
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 9  RLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQ-WKVIGSEKHVFHWHSDFYSVSKRR 68
          R L GV   LG+I F  +G + N++P+   + +++  +  G + ++FH       VSKR+
Sbjct: 7  RALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKRK 66

Query: 69 VPNGPDPIHNRRVENSKQPP 88
          VPNGPDPIHNR+ E S++PP
Sbjct: 67 VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Carg04406 vs. ExPASy TrEMBL
Match: A0A0A0KS32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60
          ME  C F + LFG FLFLGIIWFSFIG IDNAS ASRR TDMQWK+IG EKH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVR 90
          YSVSKRRVPNGPDPIHNRRVENS+QPP+R
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of Carg04406 vs. ExPASy TrEMBL
Match: A0A6J1HAQ4 (uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 27  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 86
           GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PVRA 91
           PVRA
Sbjct: 110 PVRA 113

[Close]

BLAST of Carg04406 vs. ExPASy TrEMBL
Match: A0A6J1HAS8 (uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 27  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 86
           GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PVRA 91
           PVRA
Sbjct: 110 PVRA 113

[Close]

BLAST of Carg04406 vs. ExPASy TrEMBL
Match: A0A6A1VIF3 (CLAVATA3/ESR (CLE)-related protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G008522 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 6  RFFRLLFGVFLFLGIIWFSFIGGIDN----ASPASRRATDM--QWKVIGSEKHVFHWHSD 65
          R FR LFG  LF+G+IWF  +G + N     S  + R+T++   WK+IG EKHV HW SD
Sbjct: 6  RLFRALFGTLLFVGVIWFLTVGILANHASKTSTITARSTEIFKYWKLIGREKHVVHWASD 65

Query: 66 FYSVSKRRVPNGPDPIHNRRVENSKQPPVRA 91
             VS+RRVPNGPDPIHNRR   +++PP R+
Sbjct: 66 LNYVSRRRVPNGPDPIHNRRAAKTRRPPGRS 96

[Close]

BLAST of Carg04406 vs. ExPASy TrEMBL
Match: A0A5A7T759 (CLAVATA3/ESR (CLE)-related protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00030 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 35 ASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNR 79
          ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNR
Sbjct: 26 ASRRETDMQWKLIGKEKHFFHWHSDFYSVSKRRVPNGPDPIHNR 69

[Close]

BLAST of Carg04406 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 9  RLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQ-WKVIGSEKHVFHWHSDFYSVSKRR 68
          R L GV   LG+I F  +G + N++P+   + +++  +  G + ++FH       VSKR+
Sbjct: 7  RALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKRK 66

Query: 69 VPNGPDPIHNRRVENSKQPP 88
          VPNGPDPIHNR+ E S++PP
Sbjct: 67 VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Carg04406 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 48.5 bits (114), Expect = 3.2e-06
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 61  YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 91
           Y  SKR+VP GPDPIHNRR  NS++PP RA
Sbjct: 73  YVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

The following BLAST results are available for this feature:

BLAST of Carg04406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033147.1	3.0e-46	100.00	CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6578608.1	5.1e-38	84.44	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN52425.1	2.1e-36	83.15	hypothetical protein Csa_008367 [Cucumis sativus]	[more]
KAG6602472.1	3.0e-30	96.97	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022961025.1	5.1e-30	100.00	uncharacterized protein LOC111461653 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg04406 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL4	4.0e-09	41.25	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Carg04406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS32	1.0e-36	83.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1	[more]
A0A6J1HAQ4	2.5e-30	100.00	uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HAS8	2.5e-30	100.00	uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6A1VIF3	3.1e-17	52.75	CLAVATA3/ESR (CLE)-related protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G00...	[more]
A0A5A7T759	2.7e-16	90.91	CLAVATA3/ESR (CLE)-related protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Carg04406 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28455.1	2.8e-10	41.25	CLAVATA3/ESR-RELATED 25	[more]
AT1G69970.2	3.2e-06	70.00	CLAVATA3/ESR-RELATED 26	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR34277:SF18	CLAVATA3/ESR (CLE)-RELATED PROTEIN 25	coord: 4..89
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 4..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04406-RA	Carg04406-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane