Carg04405 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04405
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 20575444 .. 20577794 (-)
RNA-Seq ExpressionCarg04405
SyntenyCarg04405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAACCAGTCTTCCTCCGACACAACCCACCGGCCTGGAGCCGCAGAGTCCCATTTTCCGGTGGCCGGTAGGCTCCTCCTCCCCGTGGCGGAGCCGAGATGCACAGATCGGACGGAAAAGGTTGAGAGAATCGCAATGCAGGTTGTGTGAGTTTTGAGGGTTCTAATGTGGATTCGTAATCGGAATCGGAGCTAAGCGATGTCGACGAATCGCGTACGCAATCCAAAGCTCTCCTTGTTTGCACAATTAATATTCATCAAGGTTGCATTGCATTCCTCTTCCTACTTGATTGTCATCCGACGGTCCTCATTCGTTCAAACGCTGAGAACCATTCCCGCCACGTGTCATCTCTTGCTCCCGCGACTTTGTCCGAACACCTGCGTTTTCTTCATTATCTTTTAATTAATAAACCTCTTTTATGATCCATTTATATTTTAATTATCAAATAATCTTTTTATGTCCCATAAATTATTAAAATTCCAATTAATAAATGGCCCGAATTTAATTATTGGGCTGCGTTACTATAAGCCCAAGTTATTGGGCCTGGCCCATTTATGTAGTTACGCTTGGACGGATATTTTTCCCTCCAAATTTTATTGAGCCATCCGAGAGATCCTTCCCGGTTTTTTCTTCGTGGGAGCTAGTGCTAACATCGGATGTTAGCTTGTTTTTTCTGAATCTTCGACTCGTCAAATTGTGTTACAGATCGAGCACTCCTCTGTTATCGTTTGCTTGTAGAGTGAGTTCCTGTTGTTGTTGTGTTGGAGAAATGGAAAGACGATTTTATTGTATCATATATTATGCTGTTATCAAACTTTCGATTCTCTATTGGTTTCAGAATCTGGAATGATACGGAGACGGAGCTAAGGAAAAAGTTGTTGGAGCTGCGTGGAATTGATCCTGATGAGTTTTTGCTGAACCTTCTACTAATGTTGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATGGTTGTTTTATTTCATTTCCTTTCAAACATCAAACATGAACAGTTTGTATTATTCTTGTCTGTTTGAATTGTGCAATTTCGTTATATTGGCTACGGTATTGAGCGTTTGGATATTTGGTATAATGCTTAATTTTCTTCGTTCGAGTTGCTCTTTTAATCTCTCTGATCGTTAAGTTTCCTTGAAGTGCGAAATCGGTATAAGGCAAGCATATTCTAGCTGAGAATCTTAAACCTCAACGGCTGACACATAAGTTACTTACGAGTTTTGCTCTTTTTTCCATTTTGTTTAGTGCTTTGTGCTGGGAGAAAGATTGCGTAGCCTTAAGTTGTGATAGCGTTACATTGATATCAAATTTCAATTAATTCTATCCTCAGAAGTGTCAATCATTCCCTGGCCTAACTGGGCTCTACTATCCACTGTATATCTTCCAAAGTAGAGAGGCCATCTTTCAGAGGGGATATCTATCTCTGCCATAGAGATTACTCCTTCCAAATTTCGAAATGAAGGGAGAGAAATATTTGTATAATTTGATATTGAAGCTCTTTTGGTAATAGAACTTTTCTTACAAGGCTGGAGATGAACAAATACTCTATTTGGATTAAAGATATCCCTCTTAAATATCAAATTACACAAATTGAAAGCTATAGTATTAGTTTAATTTTGTAAGTTGATTGAATTATTTCATTTTGGATTTATTCCAGTCACATACTTCATCAACTTAATCATGTTCAATAGGCGCCAACTTAATCATCAACTTAATCAACTTGAATTATTTCACTTTCTTTGTATTTATTGAAGTCTGGACATGGGATCTGCATTCTGTGAGAATTATTTCTGTTTTTTCTCTTAATCCCTTTCCCTATTGAGTTACAAATATATTTGTGTCTAACTGCAGACTACGTACTGGCGGTTTGATCGGACACTTGACAATTTTTGGACCCAAGTGGACTCATAAGGAAAAAGAAAGAAAAGGTTAAATCGACTTGATGAAGTTTCTGTAGCCGCCGATTGAAATTAGCTTGTGATATTGTTCGGAAACAGATGCTACAAGCCTAAGTTCAAGTGGTCCGAGTGTATCTTAAAGAGCTGCATGCTTTTCCATCAAAGAATTTAAAAGTGCTGCATGCTTTGAAGCATTGTCATCGTTCCATTCTGTTGGTTATTGGGCATTGCAGTATCCAGATGTTGATACTACTTTTCTTGATTGTATTGGCATCTTGGAAGTACAGGGTTCCTAACTGTTGCAGGTCAAGGGTGAATCTACAGCCACCTGCGCTTTGTCTAGTTCTAGAATATATATCCAAGCTTCATGATGGCAAGCCTTAAAGAAAACATGGCAGAGAATATACCACCTAATTATTTCCCCGGTGAGCGGTAG

mRNA sequence

GGAACCAGTCTTCCTCCGACACAACCCACCGGCCTGGAGCCGCAGAGTCCCATTTTCCGGTGGCCGGTAGGCTCCTCCTCCCCGTGGCGGAGCCGAGATGCACAGATCGGACGGAAAAGAATCTGGAATGATACGGAGACGGAGCTAAGGAAAAAGTTGTTGGAGCTGCGTGGAATTGATCCTGATGAGTTTTTGCTGAACCTTCTACTAATACTACGTACTGGCGGTTTGATCGGACACTTGACAATTTTTGGACCCAAGTGGACTCATAAGGAAAAAGAAAGAAAAGGTTAAATCGACTTGATGAAGTTTCTGTAGCCGCCGATTGAAATTAGCTTGTGATATTGTTCGGAAACAGATGCTACAAGCCTAAGTTCAAGTGGTCCGAGTGTATCTTAAAGAGCTGCATGCTTTTCCATCAAAGAATTTAAAAGTGCTGCATGCTTTGAAGCATTGTCATCGTTCCATTCTGTTGGTTATTGGGCATTGCAGTATCCAGATGTTGATACTACTTTTCTTGATTGTATTGGCATCTTGGAAGTACAGGGTTCCTAACTGTTGCAGGTCAAGGGTGAATCTACAGCCACCTGCGCTTTGTCTAGTTCTAGAATATATATCCAAGCTTCATGATGGCAAGCCTTAAAGAAAACATGGCAGAGAATATACCACCTAATTATTTCCCCGGTGAGCGGTAG

Coding sequence (CDS)

GGAACCAGTCTTCCTCCGACACAACCCACCGGCCTGGAGCCGCAGAGTCCCATTTTCCGGTGGCCGGTAGGCTCCTCCTCCCCGTGGCGGAGCCGAGATGCACAGATCGGACGGAAAAGAATCTGGAATGATACGGAGACGGAGCTAAGGAAAAAGTTGTTGGAGCTGCGTGGAATTGATCCTGATGAGTTTTTGCTGAACCTTCTACTAATACTACGTACTGGCGGTTTGATCGGACACTTGACAATTTTTGGACCCAAGTGGACTCATAAGGAAAAAGAAAGAAAAGGTTAA

Protein sequence

GTSLPPTQPTGLEPQSPIFRWPVGSSSPWRSRDAQIGRKRIWNDTETELRKKLLELRGIDPDEFLLNLLLILRTGGLIGHLTIFGPKWTHKEKERKG
Homology
[Close]
BLAST of Carg04405 vs. NCBI nr
Match: KAG7033148.1 (hypothetical protein SDJN02_07201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 3.1e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  GTSLPPTQPTGLEPQSPIFRWPVGSSSPWRSRDAQIGRKRIWNDTETELRKKLLELRGID 60
          GTSLPPTQPTGLEPQSPIFRWPVGSSSPWRSRDAQIGRKRIWNDTETELRKKLLELRGID
Sbjct: 1  GTSLPPTQPTGLEPQSPIFRWPVGSSSPWRSRDAQIGRKRIWNDTETELRKKLLELRGID 60

Query: 61 PDEFLLNLLLILRTGGLIGHLTIFGPKWTHKEKERKG 98
          PDEFLLNLLLILRTGGLIGHLTIFGPKWTHKEKERKG
Sbjct: 61 PDEFLLNLLLILRTGGLIGHLTIFGPKWTHKEKERKG 97

[Close]
BLAST of Carg04405 vs. NCBI nr
Match: KAG6602473.1 (hypothetical protein SDJN03_07706, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 41 IWNDTETELRKKLLELRGIDPDEFLLNLLLILR 74
          IWND ETELRKKLLELRGIDPDEFLLNLLLI++
Sbjct: 20 IWNDKETELRKKLLELRGIDPDEFLLNLLLIIQ 52

The following BLAST results are available for this feature:
BLAST of Carg04405 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033148.13.1e-49100.00hypothetical protein SDJN02_07201, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6602473.11.5e-0690.91hypothetical protein SDJN03_07706, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg04405 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04405 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04405 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04405-RACarg04405-RAmRNA