Carg04402 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04402
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein
Location	Carg_Chr04: 20589289 .. 20590376 (-)
RNA-Seq Expression	Carg04402
Synteny	Carg04402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATGAAAGGCGGCACCACCCAAGCCTGCGCTTCTTGCAAATACCAACGTCGCCGCTGCTCCAAAGACTGCCCCTTAGCCCCATATTTCCCAGCCGATCAGCCCAAGATGTTTCAAAACGCCCACCGCCTCTTCGGCGTCCGCAACATCATGAACATACTTAAGCAAGTCCCCCCCTCGCAAAAGGACGAGACAATGACTTCAATTATCTACGAGTCCAACATGCGCTCTAGGTTTCCGGTTTATGGTTGTTGCGGCGTGTTGTGGCAACTCCATTATCAAATACAACAAGTTAGTGAAGAACTCCAACAAGTAAAAGCTAGGGTTTCTATGATGAAGGACCTCGGGATTGCCGACGACAACGACGTCGTTTTTCCTGTTTATACACAGCAACAGCAACAGCAACAGCAACAACAACAGCAGCAACAGCAACAACAATACGATTGTTTGGGAGTAGATGGGAATGATTTATTATTTGGAAATGTGAACAATGGTGGTGTTTATGTTGATAACGATGATCATAATAATATTGGTTCCATGCTGAAGGAGTTGAGAATTCAACAACATTATAATGATAATTTTGGGATTAACGTTGAATCGATGCTAATGCAATCTAATTTGATACCCGCTGTACTGCAACATGAAATGGAAATTTCTCATGATTATGATGAAATTCCATTTGATACAATTGCAGATGATCGAATATCGTATGTTGAATCTAAAGAAGCATGTAACTCTAGGTGGGTAGTTACATTTTAATTAAGTATAGAAGAGTAGGGAAGAGATGGCATTTAGTTAAACATTTTGGTTAAAATTGATGGATTTATGGGTTTGGTTCGCAGTGCGGAATCGACCTTCAAAGATGTGTCGGAATCATCGGCTGAGTATCTATCGAGGACCGATCTCAAGAACGCTGCAGCTTGTTTTAGTCTAACGAGTTAAGACCAAAACAAATAGACCCCCAAACATTTGTATGTAAGGAAGTTTAGATTTTGGTCTTTATTAGTTGTTATTGTTTATGGTTGGTTATCAAAGTTTGATCAAAATAAAGGAAGAGCTGAGATCAGTTGAGCGATCCCTTGAGT

mRNA sequence

ATGACCATGAAAGGCGGCACCACCCAAGCCTGCGCTTCTTGCAAATACCAACGTCGCCGCTGCTCCAAAGACTGCCCCTTAGCCCCATATTTCCCAGCCGATCAGCCCAAGATGTTTCAAAACGCCCACCGCCTCTTCGGCGTCCGCAACATCATGAACATACTTAAGCAAGTCCCCCCCTCGCAAAAGGACGAGACAATGACTTCAATTATCTACGAGTCCAACATGCGCTCTAGGTTTCCGGTTTATGGTTGTTGCGGCGTGTTGTGGCAACTCCATTATCAAATACAACAAGTTAGTGAAGAACTCCAACAAGTAAAAGCTAGGGTTTCTATGATGAAGGACCTCGGGATTGCCGACGACAACGACGTCGTTTTTCCTATGATCGAATATCGTATGTTGAATCTAAAGAAGCATGTAACTCTAGTGCGGAATCGACCTTCAAAGATGTGTCGGAATCATCGGCTGAGTATCTATCGAGGACCGATCTCAAGAACGCTGCAGCTTGTTTTAGTCTAACGAGTTAAGACCAAAACAAATAGACCCCCAAACATTTGTATGTAAGGAAGTTTAGATTTTGGTCTTTATTAGTTGTTATTGTTTATGGTTGGTTATCAAAGTTTGATCAAAATAAAGGAAGAGCTGAGATCAGTTGAGCGATCCCTTGAGT

Coding sequence (CDS)

ATGACCATGAAAGGCGGCACCACCCAAGCCTGCGCTTCTTGCAAATACCAACGTCGCCGCTGCTCCAAAGACTGCCCCTTAGCCCCATATTTCCCAGCCGATCAGCCCAAGATGTTTCAAAACGCCCACCGCCTCTTCGGCGTCCGCAACATCATGAACATACTTAAGCAAGTCCCCCCCTCGCAAAAGGACGAGACAATGACTTCAATTATCTACGAGTCCAACATGCGCTCTAGGTTTCCGGTTTATGGTTGTTGCGGCGTGTTGTGGCAACTCCATTATCAAATACAACAAGTTAGTGAAGAACTCCAACAAGTAAAAGCTAGGGTTTCTATGATGAAGGACCTCGGGATTGCCGACGACAACGACGTCGTTTTTCCTATGATCGAATATCGTATGTTGAATCTAAAGAAGCATGTAACTCTAGTGCGGAATCGACCTTCAAAGATGTGTCGGAATCATCGGCTGAGTATCTATCGAGGACCGATCTCAAGAACGCTGCAGCTTGTTTTAGTCTAA

Protein sequence

MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIADDNDVVFPMIEYRMLNLKKHVTLVRNRPSKMCRNHRLSIYRGPISRTLQLVLV

Homology

[Close]

BLAST of Carg04402 vs. NCBI nr
Match: KAG7033151.1 (LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.5 bits (911), Expect = 2.5e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPMIEYRMLNLKKHVTLVRNRPSKMCRNHRLSIYRGPISRTLQLVLV 173
           DNDVVFPMIEYRMLNLKKHVTLVRNRPSKMCRNHRLSIYRGPISRTLQLVLV
Sbjct: 121 DNDVVFPMIEYRMLNLKKHVTLVRNRPSKMCRNHRLSIYRGPISRTLQLVLV 172

[Close]

BLAST of Carg04402 vs. NCBI nr
Match: XP_023524776.1 (LOB domain-containing protein 27-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPM 129
           DNDVVFP+
Sbjct: 121 DNDVVFPV 128

[Close]

BLAST of Carg04402 vs. NCBI nr
Match: KAG6602476.1 (LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPM 129
           DNDVVFP+
Sbjct: 121 DNDVVFPV 128

[Close]

BLAST of Carg04402 vs. NCBI nr
Match: XP_022923199.1 (LOB domain-containing protein 27-like [Cucurbita moschata])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPM 129
           DND VFP+
Sbjct: 121 DNDAVFPV 128

[Close]

BLAST of Carg04402 vs. NCBI nr
Match: XP_022990689.1 (LOB domain-containing protein 27-like [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPM 129
           DN+VVFP+
Sbjct: 121 DNNVVFPV 128

[Close]

BLAST of Carg04402 vs. ExPASy Swiss-Prot
Match: Q9STS6 (LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.2e-35
Identity = 67/114 (58.77%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MT+KGGT+ ACA+CKYQRRRC+ DCPLAPYFPA+QPK+FQN HRLFGVR+I+ IL+++  
Sbjct: 27  MTLKGGTSGACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDE 86

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMK 115
           +QK E M SII++S +R R PV+GC GV  QL Y I    EEL+ V +++ + +
Sbjct: 87  TQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQLYR 140

[Close]

BLAST of Carg04402 vs. ExPASy Swiss-Prot
Match: Q9LRW1 (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.2e-27
Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 7   TTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDET 66
           T QACA+CKYQRR+C+ DC LAPYFP D+ + F NAH+LFGV NI  I+K + P +KD  
Sbjct: 33  TNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAA 92

Query: 67  MTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKD 116
           M +I+++S+ R+  PV GC G++ +L YQI+    EL+ V  +++M +D
Sbjct: 93  MHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRD 141

[Close]

BLAST of Carg04402 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 7   TTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDET 66
           T   CA+CK+ RR+C  +C  APYFP DQP+ F N H++FG  N+  +L ++ PSQ+++ 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 67  MTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGI 119
           + S+ YE++MR R PVYGC GV+  L +Q++Q+  +L   K+ +S  + LGI
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGI 117

[Close]

BLAST of Carg04402 vs. ExPASy Swiss-Prot
Match: A1YKY7 (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.3e-24
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 6   GTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDE 65
           GT   CA+CK+ RR+C  DC  APYFP D P+ F   HR+FG  N+  ++ ++ P Q+++
Sbjct: 29  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQRED 88

Query: 66  TMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVS 112
            M S+ YE++MR R PVYGC GV+  L + ++Q+ ++L + K  +S
Sbjct: 89  AMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELS 134

[Close]

BLAST of Carg04402 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 4   KGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQK 63
           K G    CA+CK  RRRC++DC  +PYFPAD+P+ F N HR+FG  N+  +L+++P  Q+
Sbjct: 7   KQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQR 66

Query: 64  DETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARV 111
            + ++S++YE+N R R PVYGC G +  L  QI  +  +L   +A V
Sbjct: 67  GDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

[Close]

BLAST of Carg04402 vs. ExPASy TrEMBL
Match: A0A6J1E5P8 (LOB domain-containing protein 27-like OS=Cucurbita moschata OX=3662 GN=LOC111430962 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.7e-68
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPM 129
           DND VFP+
Sbjct: 121 DNDAVFPV 128

[Close]

BLAST of Carg04402 vs. ExPASy TrEMBL
Match: A0A6J1JSQ2 (LOB domain-containing protein 27-like OS=Cucurbita maxima OX=3661 GN=LOC111487503 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.5e-68
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP
Sbjct: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120
           SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD
Sbjct: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGIAD 120

Query: 121 DNDVVFPM 129
           DN+VVFP+
Sbjct: 121 DNNVVFPV 128

[Close]

BLAST of Carg04402 vs. ExPASy TrEMBL
Match: A0A5D3CTR4 (LOB domain-containing protein 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00630 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.2e-53
Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MT+KGGT+QACA+CKYQRRRCSKDC LAPYFPADQPKMFQNAHRLFGV NIM ILKQV P
Sbjct: 25  MTIKGGTSQACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILKQVHP 84

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKD----- 120
           SQKDETMTSIIYESNMRSRFP++GCCGV+WQLHYQIQQV+EEL+QV++RV M+K+     
Sbjct: 85  SQKDETMTSIIYESNMRSRFPIHGCCGVIWQLHYQIQQVAEELRQVRSRVDMVKEQFNQI 144

Query: 121 ----------LGIADDNDVVFPM 129
                     +G+  +ND+ +P+
Sbjct: 145 NNIGITEGEGVGVLGNNDIGYPI 167

[Close]

BLAST of Carg04402 vs. ExPASy TrEMBL
Match: A0A6J1FMW4 (LOB domain-containing protein 27-like OS=Cucurbita moschata OX=3662 GN=LOC111445645 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.2e-53
Identity = 105/149 (70.47%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MT+KGGT+QACA+CKYQRRRCSKDC LAPYFPADQPKMFQNAHRLFGV NIM IL+QV  
Sbjct: 1   MTIKGGTSQACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILRQVHA 60

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKD----- 120
           SQKDETMTSIIYESNMR+RFPV+GCCGVLWQLHYQIQQV+EEL+QV+ R++M KD     
Sbjct: 61  SQKDETMTSIIYESNMRARFPVHGCCGVLWQLHYQIQQVAEELRQVRTRLAMFKDQFIPP 120

Query: 121 -LGIAD----DNDVVFPMIEYRMLNLKKH 140
            +GIA+     ND+V+P+   +   L+++
Sbjct: 121 NIGIAEGNFGSNDMVYPIYTQQQQQLQQY 149

[Close]

BLAST of Carg04402 vs. ExPASy TrEMBL
Match: A0A0A0KXA1 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G633830 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.8e-53
Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MT+KGGT+QACA+CKYQRRRCSKDC LAPYFPADQPKMFQNAHRLFGV NIM ILKQV P
Sbjct: 28  MTIKGGTSQACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILKQVHP 87

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKD----- 120
           SQKDETMTSIIYESNMRSRFPV+GCCGV+WQLHYQIQQV+EEL+ V++RV M+K+     
Sbjct: 88  SQKDETMTSIIYESNMRSRFPVHGCCGVIWQLHYQIQQVAEELRLVRSRVDMVKEQFNQM 147

Query: 121 --------LGIADDNDVVFPM 129
                    G+  +NDV +P+
Sbjct: 148 NNIGISETAGVVGNNDVAYPI 168

[Close]

BLAST of Carg04402 vs. TAIR 10
Match: AT3G47870.1 (LOB domain-containing protein 27 )

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-36
Identity = 67/114 (58.77%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 1   MTMKGGTTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPP 60
           MT+KGGT+ ACA+CKYQRRRC+ DCPLAPYFPA+QPK+FQN HRLFGVR+I+ IL+++  
Sbjct: 27  MTLKGGTSGACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDE 86

Query: 61  SQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMK 115
           +QK E M SII++S +R R PV+GC GV  QL Y I    EEL+ V +++ + +
Sbjct: 87  TQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQLYR 140

[Close]

BLAST of Carg04402 vs. TAIR 10
Match: AT3G13850.1 (LOB domain-containing protein 22 )

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-28
Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 7   TTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDET 66
           T QACA+CKYQRR+C+ DC LAPYFP D+ + F NAH+LFGV NI  I+K + P +KD  
Sbjct: 33  TNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAA 92

Query: 67  MTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKD 116
           M +I+++S+ R+  PV GC G++ +L YQI+    EL+ V  +++M +D
Sbjct: 93  MHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRD 141

[Close]

BLAST of Carg04402 vs. TAIR 10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-27
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 7   TTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDET 66
           T   CA+CK+ RR+C  +C  APYFP DQP+ F N H++FG  N+  +L ++ PSQ+++ 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 67  MTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGI 119
           + S+ YE++MR R PVYGC GV+  L +Q++Q+  +L   K+ +S  + LGI
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGI 117

[Close]

BLAST of Carg04402 vs. TAIR 10
Match: AT1G65620.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-27
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 7   TTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDET 66
           T   CA+CK+ RR+C  +C  APYFP DQP+ F N H++FG  N+  +L ++ PSQ+++ 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 67  MTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGI 119
           + S+ YE++MR R PVYGC GV+  L +Q++Q+  +L   K+ +S  + LGI
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGI 117

[Close]

BLAST of Carg04402 vs. TAIR 10
Match: AT1G65620.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-27
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 7   TTQACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDET 66
           T   CA+CK+ RR+C  +C  APYFP DQP+ F N H++FG  N+  +L ++ PSQ+++ 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 67  MTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQQVKARVSMMKDLGI 119
           + S+ YE++MR R PVYGC GV+  L +Q++Q+  +L   K+ +S  + LGI
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGI 117

The following BLAST results are available for this feature:

BLAST of Carg04402 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033151.1	2.5e-94	100.00	LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023524776.1	4.1e-68	99.22	LOB domain-containing protein 27-like [Cucurbita pepo subsp. pepo]	[more]
KAG6602476.1	4.1e-68	99.22	LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022923199.1	1.2e-67	98.44	LOB domain-containing protein 27-like [Cucurbita moschata]	[more]
XP_022990689.1	1.5e-67	98.44	LOB domain-containing protein 27-like [Cucurbita maxima]	[more]

BLAST of Carg04402 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STS6	6.2e-35	58.77	LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 S...	[more]
Q9LRW1	6.2e-27	49.54	LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 S...	[more]
O04479	1.2e-25	43.75	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A1YKY7	8.3e-24	42.45	Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1	[more]
Q9SHE9	1.9e-23	43.93	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]

BLAST of Carg04402 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5P8	5.7e-68	98.44	LOB domain-containing protein 27-like OS=Cucurbita moschata OX=3662 GN=LOC111430...	[more]
A0A6J1JSQ2	7.5e-68	98.44	LOB domain-containing protein 27-like OS=Cucurbita maxima OX=3661 GN=LOC11148750...	[more]
A0A5D3CTR4	5.2e-53	71.33	LOB domain-containing protein 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1FMW4	5.2e-53	70.47	LOB domain-containing protein 27-like OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]
A0A0A0KXA1	6.8e-53	73.05	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G633830 PE=3 SV...	[more]

BLAST of Carg04402 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47870.1	4.4e-36	58.77	LOB domain-containing protein 27	[more]
AT3G13850.1	4.4e-28	49.54	LOB domain-containing protein 22	[more]
AT1G65620.1	8.3e-27	43.75	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G65620.2	8.3e-27	43.75	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G65620.3	8.3e-27	43.75	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..116
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 7..120
None	No IPR available	PANTHER	PTHR31301:SF21	LOB DOMAIN-CONTAINING PROTEIN 27-RELATED	coord: 7..120
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..107 e-value: 2.4E-38 score: 130.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..110 score: 25.293261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04402-RA	Carg04402-RA	mRNA