Carg04378 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04378
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 20760544 .. 20761172 (+)
RNA-Seq ExpressionCarg04378
SyntenyCarg04378
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATACCTTCCTTTTACTTTCCCTTCACAACTCTCTCTCTAGCTGCCTTATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGTACACAAACAAATTTCCCATGTTTTTCTTCTATGTTCACTCCCTTGATTCTCATAGTTCTTCATTTTGTCTTCAGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGGTAAGCTTTTTGGAAGCCTAGAAATGGAGTTTTTGGAAGATATTGGTGTAATTAACGAAGGGGTTTGTTTGTGTTGGCAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGAATCTCAAATAATGATTTCTTCTCTGTTCTTCGTTTCTCATATCATATTCTAACTTCCAAGTGTAAGGAATTGCACCTTTTGCTGTCAGATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAATTATAACTTGGGTTTTGTGCCATACTAATAAACT

mRNA sequence

CATACCTTCCTTTTACTTTCCCTTCACAACTCTCTCTCTAGCTGCCTTATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGAATCTCAAATAATGATTTCTTCTCTGTTCTTCGTTTCTCATATCATATTCTAACTTCCAAGTGTAAGGAATTGCACCTTTTGCTGTCAGATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAATTATAACTTGGGTTTTGTGCCATACTAATAAACT

Coding sequence (CDS)

ATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGA

Protein sequence

MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPLPPSS
Homology
BLAST of Carg04378 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 5.1e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGP 60
          MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGP
Sbjct: 1  MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGP 60

Query: 61 NTNTRSGYLTPPSSPPLPPSS 82
          NTNTRSGYLTPPSSPPLPPSS
Sbjct: 61 NTNTRSGYLTPPSSPPLPPSS 81

BLAST of Carg04378 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0

Query: 4  PKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTN 63
          PKIFPILLLLFII GFGVGAMEAAAH G D SSSQKKSGGKPRKVMMEVMDYADPGPNTN
Sbjct: 2  PKIFPILLLLFIIFGFGVGAMEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTN 61

Query: 64 TRSGYLTPPSSPPLPPSS 82
          TRSGYLTPPSSPP PPSS
Sbjct: 62 TRSGYLTPPSSPPPPPSS 79

BLAST of Carg04378 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0

Query: 4  PKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTN 63
          PKIFPILLLLFII GFGVGAMEAAAH G D SSSQ KSGGKPRKVMMEVMDYADPGPNTN
Sbjct: 2  PKIFPILLLLFIIFGFGVGAMEAAAHAGCDISSSQ-KSGGKPRKVMMEVMDYADPGPNTN 61

Query: 64 TRSGYLTPPSSPPLPPSS 82
          TRSGYLTPPSSPP PPSS
Sbjct: 62 TRSGYLTPPSSPPPPPSS 78

BLAST of Carg04378 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 1  MDHPKIFPILLLL--FIILGFGVG----AMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSPPLP 79
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLNPP-PPPSP 84

BLAST of Carg04378 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 24 MEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTR-SGYLTPPSSP 76
          +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTR SGYL PP  P
Sbjct: 2  IESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPP 54

BLAST of Carg04378 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 1  MDHPKIFPILLLL--FIILGFGVG----AMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSPPLP 79
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLNPP-PPPSP 84

BLAST of Carg04378 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 24 MEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTR-SGYLTPPSSP 76
          +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTR SGYL PP  P
Sbjct: 2  IESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPP 54

BLAST of Carg04378 vs. ExPASy TrEMBL
Match: A0A7J7NY32 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_007365 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-05
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 9  ILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSG- 68
          IL L F   GFG G     +  G D S+S  K  G  R+ MMEVMDY+DP PNTN ++G 
Sbjct: 16 ILSLFFSSQGFGFGRNSMVS--GNDNSNSVLKGNGNVRE-MMEVMDYSDPEPNTNPKTGN 75

Query: 69 YLTPPSSPPLPP 80
           LTPPS PP PP
Sbjct: 76 LLTPPSPPPSPP 84

BLAST of Carg04378 vs. ExPASy TrEMBL
Match: A0A540K4V3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_045201 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-04
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 10 LLLLFIILGFGVGAMEAAAHPGYDTS-SSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGY 69
          LL LF   GFG   ME A H   D+S    K++ GK RK M+ VMDYADP PN N R+GY
Sbjct: 15 LLALFCTHGFGRKLMETAEHGEEDSSVLVSKENDGKSRK-MITVMDYADPEPNVNPRTGY 74

Query: 70 LTPPSSPPLP 79
          +  P  PP P
Sbjct: 75 IFAP--PPQP 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6602500.15.1e-37100.00hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527249.11.2e-3093.59uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023527257.11.1e-2892.31uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
KGN52468.12.4e-1055.29hypothetical protein Csa_007886 [Cucumis sativus][more]
KAA0039487.13.6e-0660.38hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSB71.2e-1055.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT51.7e-0660.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7NY324.2e-0552.78Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_007365 PE=4 SV=1[more]
A0A540K4V38.0e-0451.43Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_045201 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..81
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 10..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04378-RACarg04378-RAmRNA