Carg04372 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04372
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 20785686 .. 20786921 (+)
RNA-Seq ExpressionCarg04372
SyntenyCarg04372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGGCAATTGTTTCGATGTATTTATTAGTAGATTACTGATTCTATGGTGCCTCCAAGAACAACAGATGGGATTTGGTGAATCGATACCCTCTTTCTAGTTCTAATCATATCCTATTCACATGAACCAATGGTTGTGGAGCACAATTGCTCATCTGCCTGTGCAATGAATATCAAAACATTTATGCTGATGCCTTGAATTTACTGTAGTTTAAATTTAGAAGTTTTGTGTGGATGTAAGACACGAAACAGCCTGTCAAAAGCATTCAAGTTTTGACAATGACAATGTTGCAGAGTATATCAGCAACTAGGACAGAAATAAATGAAAGGATAGGCAAAGAAAATATCCAATACCCAAAATGTGCATTTAAAAACCAGAATATTCATCTATCTGTTACTCGCTTGTAAATCTCAATTTAAGTAACTATTAATGACTGAATTATCTCATTTCTATGAATTCTTATTATCTGCTTTGATTAACTTTTTGCTAAGTTCAGCGATGTACATCAACGATCATGTATTTTACTCTGCCTTTAATGTTGATTTACACATATAATGCTGGTTAGGATTTGTATGGTTAATTGTAGAGGAGGAGGGGAATAGCTGAGCTCAAGGCAACGACTCCAGATCCTAATATTCTAAGCTTTTAGACAACTCAGTATGCAGGATCAGGGAAACCAGAGGTGAGGTGACGGATCCTTCCACCTTCATTTTCTTGTTTCTTTATTGTGGCTTTGATCCATCTCTTTTATTTCGAAAAGAAATTGCATGTCTGGACTTGTATCTTTTTTTACAAATGTTATGGTGTACATTTATTAGGGCTATTTACTCTTATGTTGGACCTATTCAAAGCTAAAGTTGGCAGTGATGAAATCGTAGTAAATTAGTTGTCCCCACGGTCTCGTCTACAACATGAATGCCGGATCTGTAAAGTTTTGCTTCTCACACCCTCATAAACAAAGCATTTAAGCTTATAGAAAAGGCCTTTCTTTTCTCTTATGGACCCCCACCCTCTTCTGTTGCCCCCAAATCGTTTATGATTCACCTTCACAAGCTTGGAGTCCATAATCAATAAATTGCTTCCGCATTCAGAAAACTATGAAAGTACCCATTAACACACTATTGTGAGAAAGTTATACAAAGAAGTAGCCACGGTCTCAATTTCTCATTAAAGTGCTTGCCGGATCTGGATTGCTGATGAGGAAAGGTGGAATTATAGGGATGCTTGGATGA

mRNA sequence

ATGTTTTTGGCAATTGTTTCGATATTACTGATTCTATGGTGCCTCCAAGAACAACAGATGGGATTTGGGCTATTTACTCTTATGTTGGACCTATTCAAAGCTAAAGTTGGCAGTGATGAAATCGTACCACGGTCTCAATTTCTCATTAAAGTGCTTGCCGGATCTGGATTGCTGATGAGGAAAGGTGGAATTATAGGGATGCTTGGATGA

Coding sequence (CDS)

ATGTTTTTGGCAATTGTTTCGATATTACTGATTCTATGGTGCCTCCAAGAACAACAGATGGGATTTGGGCTATTTACTCTTATGTTGGACCTATTCAAAGCTAAAGTTGGCAGTGATGAAATCGTACCACGGTCTCAATTTCTCATTAAAGTGCTTGCCGGATCTGGATTGCTGATGAGGAAAGGTGGAATTATAGGGATGCTTGGATGA

Protein sequence

MFLAIVSILLILWCLQEQQMGFGLFTLMLDLFKAKVGSDEIVPRSQFLIKVLAGSGLLMRKGGIIGMLG
Homology
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BLAST of Carg04372 vs. NCBI nr
Match: KAG7033180.1 (hypothetical protein SDJN02_07234, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 6.9e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MFLAIVSILLILWCLQEQQMGFGLFTLMLDLFKAKVGSDEIVPRSQFLIKVLAGSGLLMR 60
          MFLAIVSILLILWCLQEQQMGFGLFTLMLDLFKAKVGSDEIVPRSQFLIKVLAGSGLLMR
Sbjct: 1  MFLAIVSILLILWCLQEQQMGFGLFTLMLDLFKAKVGSDEIVPRSQFLIKVLAGSGLLMR 60

Query: 61 KGGIIGMLG 70
          KGGIIGMLG
Sbjct: 61 KGGIIGMLG 69

The following BLAST results are available for this feature:
BLAST of Carg04372 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033180.16.9e-27100.00hypothetical protein SDJN02_07234, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04372 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04372 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04372 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04372-RACarg04372-RAmRNA