Carg04346 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04346
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 68421 .. 69250 (+)
RNA-Seq ExpressionCarg04346
SyntenyCarg04346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAGGTAAGAGTATTTCTTATTTCTATTCTTTTTGGAGAGATTTTTTTTAATGATGTGAATTTTAAGGGCCTAGGGTACGCTTTTCGGGCTTCAGTCTTCTATCGCTGCCCAACAATTTTCCCCTTTCGTATGAATTTAGGGGCTACGGACTGTGTCTTGTCGTCGATTTTTCTTGATCTCATCCCGCTGGATGTTCAAATTTCCTTGATTATTCCCATTGGGTCGGTGGGTTCTTCCATTTCTGTCGTCGGAGGCGGTGAATTTCCTTTTGCTTCTTCCGGTGGAGGTTGGTTCGTTTAATTTTGAGGTTTTCTCTTATGGGTTTCGCTTTGGAGCTTCGATTATGATGGTTTTCGTGGTTATCCTTGAAGTGATTTTGCTCAACCTGCAGCTGAATGTATTCTTTGCTCTTCCACTACATGTTGATCACAGTTGTAGATTCTTAACAGATAGGGTTTGAGTTCTTAATAAGTTCTGCATTCTATTTTTGCATAAATTTTGTGGTGAGGTGGGTGAGTTTTAGGGTTTAACTGTTGGTCCGGTAAAAATTAGAGGTTCTGGACGGCTTTGATTTTGATCTTAAAGCCGTTTCTGAGGGGCTTTGGAATGATGGCATTGTTTCATCCTCAGAATGAAAATTCAGGTTCTTTAATTCTATGTCATGTCCAATGGGTATTGGTCTCCGAGATTTTTAACTGATTCCAGGGTGTTGAGGCTCTGCTTTGGTGAATGTTTGTGTTCTAACGGTTCCTCGAGGAAGTGGAAAGGTCTCATTGCTCAAGGAACTTCGCTTAATGCAATTTTCTCCCGATTATTCCTGTAA

mRNA sequence

ATGGAGAAAGGGGCTACGGACTGTGTCTTGTCGTCGATTTTTCTTGATCTCATCCCGCTGGATGTTCAAATTTCCTTGATTATTCCCATTGGGTCGGTGGGTTCTTCCATTTCTGTCGTCGGAGGCGGTGAATTTCCTTTTGCTTCTTCCGGTGGAGGTTGGGTGTTGAGGCTCTGCTTTGGTGAATGTTTGTGTTCTAACGGTTCCTCGAGGAAGTGGAAAGGTCTCATTGCTCAAGGAACTTCGCTTAATGCAATTTTCTCCCGATTATTCCTGTAA

Coding sequence (CDS)

ATGGAGAAAGGGGCTACGGACTGTGTCTTGTCGTCGATTTTTCTTGATCTCATCCCGCTGGATGTTCAAATTTCCTTGATTATTCCCATTGGGTCGGTGGGTTCTTCCATTTCTGTCGTCGGAGGCGGTGAATTTCCTTTTGCTTCTTCCGGTGGAGGTTGGGTGTTGAGGCTCTGCTTTGGTGAATGTTTGTGTTCTAACGGTTCCTCGAGGAAGTGGAAAGGTCTCATTGCTCAAGGAACTTCGCTTAATGCAATTTTCTCCCGATTATTCCTGTAA

Protein sequence

MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGGWVLRLCFGECLCSNGSSRKWKGLIAQGTSLNAIFSRLFL
Homology
[Close]
BLAST of Carg04346 vs. NCBI nr
Match: KAG7036395.1 (hypothetical protein SDJN02_00012, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGGWVLRLCF 60
          MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGGWVLRLCF
Sbjct: 1  MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGGWVLRLCF 60

Query: 61 GECLCSNGSSRKWKGLIAQGTSLNAIFSRLFL 93
          GECLCSNGSSRKWKGLIAQGTSLNAIFSRLFL
Sbjct: 61 GECLCSNGSSRKWKGLIAQGTSLNAIFSRLFL 92

[Close]
BLAST of Carg04346 vs. NCBI nr
Match: KAG6606676.1 (AT-rich interactive domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-19
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1  MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGGWVLRLC 60
          MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGG   + C
Sbjct: 1  MEKGATDCVLSSIFLDLIPLDVQISLIIPIGSVGSSISVVGGGEFPFASSGGGAARQTC 59

The following BLAST results are available for this feature:
BLAST of Carg04346 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036395.11.2e-42100.00hypothetical protein SDJN02_00012, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606676.19.3e-1991.53AT-rich interactive domain-containing protein 4, partial [Cucurbita argyrosperma... [more]
BLAST of Carg04346 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04346 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04346 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04346-RACarg04346-RAmRNA