Carg04292 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04292
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ESCRT-related protein CHMP1B-like
Location	Carg_Chr01: 361664 .. 362275 (+)
RNA-Seq Expression	Carg04292
Synteny	Carg04292

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATACGGAGAAATTGTTGAACCAGATAATGGAATTGAAGTTCACGGCGAAATCCCTGCAGCGCCAAGCGAGAAAGTGTGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGGGCACGAATTTATGCCGAGAACGCGATCCGGAAGCGTACGGAACAGATGAATTATCTCCGGCTCGCTTCGCGGCTCGATGCGGTCGTGGCTCGTCTCGATACGCAGGCGAAGATGTCCACTATAAACAAGGCTATGGGCTCGATCGTCAAATCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTTATGGAGAATGCGATGGCAGGTTCGACTTCTCTGTCGACTCCAGAGGGAGAGGTTAATAGTTTGATGCAACAAGTGGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTTCCCCAGCCGGCAGGTCACGCTGTGCCAACCAGGGAGACCGAGAAAATCGACGAGGACGACTTGACAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

mRNA sequence

ATGGGTAATACGGAGAAATTGTTGAACCAGATAATGGAATTGAAGTTCACGGCGAAATCCCTGCAGCGCCAAGCGAGAAAGTGTGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGGGCACGAATTTATGCCGAGAACGCGATCCGGAAGCGTACGGAACAGATGAATTATCTCCGGCTCGCTTCGCGGCTCGATGCGGTCGTGGCTCGTCTCGATACGCAGGCGAAGATGTCCACTATAAACAAGGCTATGGGCTCGATCGTCAAATCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTTATGGAGAATGCGATGGCAGGTTCGACTTCTCTGTCGACTCCAGAGGGAGAGGTTAATAGTTTGATGCAACAAGTGGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTTCCCCAGCCGGCAGGTCACGCTGTGCCAACCAGGGAGACCGAGAAAATCGACGAGGACGACTTGACAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Coding sequence (CDS)

ATGGGTAATACGGAGAAATTGTTGAACCAGATAATGGAATTGAAGTTCACGGCGAAATCCCTGCAGCGCCAAGCGAGAAAGTGTGAGAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGGGCACGAATTTATGCCGAGAACGCGATCCGGAAGCGTACGGAACAGATGAATTATCTCCGGCTCGCTTCGCGGCTCGATGCGGTCGTGGCTCGTCTCGATACGCAGGCGAAGATGTCCACTATAAACAAGGCTATGGGCTCGATCGTCAAATCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTTATGGAGAATGCGATGGCAGGTTCGACTTCTCTGTCGACTCCAGAGGGAGAGGTTAATAGTTTGATGCAACAAGTGGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTTCCCCAGCCGGCAGGTCACGCTGTGCCAACCAGGGAGACCGAGAAAATCGACGAGGACGACTTGACAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Protein sequence

MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPTRETEKIDEDDLTRRLAELKARG

Homology

[Close]

BLAST of Carg04292 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6606731.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036449.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.6 bits (963), Expect = 2.8e-100
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDLTRRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 369.4 bits (947), Expect = 2.0e-98
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. NCBI nr
Match: XP_004146833.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KAA0061110.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. NCBI nr
Match: KAE8651298.1 (hypothetical protein Csa_002473 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. NCBI nr
Match: XP_038878614.1 (ESCRT-related protein CHMP1B-like [Benincasa hispida])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 197/203 (97.04%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLE+TLATGNLQKMSETMD+
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLETTLATGNLQKMSETMDR 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-93
Identity = 180/203 (88.67%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI K+M +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK+DEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 5.9e-93
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI K+M +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK++EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.9e-85
Identity = 172/205 (83.90%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+ QI +LKFT+KSLQRQARKCEKEEK +KLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTE MNYLRLASRLDAVVARLDTQAKM  I K+M +IVKSL+S LATGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -TRETEK-IDEDDLTRRLAELKARG 204
             +E EK +DEDDL+RRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]

BLAST of Carg04292 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 90/194 (46.39%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 9   NQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFT+K L++Q++K E+ EK++K+K+KKA+E+GNMDGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNM 128
           LRLASR+DAV +R++T  +M ++  +M +IVKS+E ++   +L+K+++ MDQFE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPTRETEKID 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+ + ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLTRRLAELKAR 203
            D+LT RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

[Close]

BLAST of Carg04292 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-43
Identity = 95/200 (47.50%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           M N EK    +  LKF AK L R A+KC+KEEK+EK KIKKA++KGNM+ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           ++ + +N+LR+++R+DAV AR+ T   M  + K+M  +VKS+++TL T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 180

Query: 181 TRETEKIDEDDLTRRLAELK 201
           T      ++D+L++RLA L+
Sbjct: 181 T-SVASAEQDELSQRLARLR 196

[Close]

BLAST of Carg04292 vs. ExPASy TrEMBL
Match: A0A6J1KC50 (ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDLTRRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy TrEMBL
Match: A0A6J1GD16 (ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDLTRRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy TrEMBL
Match: A0A6J1D4C5 (ESCRT-related protein CHMP1B-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016858 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.7e-99
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           TRETEKIDEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy TrEMBL
Match: A0A5A7V1A1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00240 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. ExPASy TrEMBL
Match: A0A0A0LIG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-94
Identity = 180/203 (88.67%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI K+M +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK+DEDDL+RRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 341.7 bits (875), Expect = 4.2e-94
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI K+M +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEDDLTRRLAELKARG 204
           T+  EK++EDDLTRRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Carg04292 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 45/174 (25.86%), Postives = 89/174 (51.15%), Query Frame = 0


Query: 19  KSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAV 78
           + ++R+ +  + +EK    +IKK  ++G M   ++ A++ IR R +   + +L S+L  V
Sbjct: 28  REIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 87

Query: 79  VARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENA 138
             R+ T      + +AM  + K++       NL  + + M +FE+Q   ME+ +E M +A
Sbjct: 88  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDA 147

Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAGH-AVPTRETEKIDED 191
           +  +      E E   L+ QV D+ G++++  L   P+G  AVP  + + +  +
Sbjct: 148 IDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAE 201

[Close]

BLAST of Carg04292 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-06
Identity = 45/201 (22.39%), Postives = 83/201 (41.29%), Query Frame = 0


Query: 13  ELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLA 72
           E+    + ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     
Sbjct: 20  EMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSR 79

Query: 73  SRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQA 132
           +++  V          ++I+  M    K++ +        K ++ +  F+KQ   +++  
Sbjct: 80  AQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTI 139

Query: 133 EFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PAGHAV 192
           E M  A+  +      E E   L  QV D+ G+ V+  L               PA  A 
Sbjct: 140 EMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAA 199

Query: 193 PTRETEKIDEDDLTRRLAELK 201
             + +E  + D+L +RLA L+
Sbjct: 200 TNKNSESSEVDELEKRLASLR 220

[Close]

BLAST of Carg04292 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 44/195 (22.56%), Postives = 81/195 (41.54%), Query Frame = 0


Query: 19  KSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAV 78
           + ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     +++  V
Sbjct: 6   RGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGV 65

Query: 79  VARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENA 138
                     ++I+  M    K++ +        K ++ +  F+KQ   +++  E M  A
Sbjct: 66  TTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEA 125

Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PAGHAVPTRETE 198
           +  +      E E   L  QV D+ G+ V+  L               PA  A   + +E
Sbjct: 126 IDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSE 185

Query: 199 KIDEDDLTRRLAELK 201
             + D+L +RLA L+
Sbjct: 186 SSEVDELEKRLASLR 200

The following BLAST results are available for this feature:

BLAST of Carg04292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949550.1	2.8e-100	100.00	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel...	[more]
XP_022148096.1	2.0e-98	98.03	ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]	[more]
XP_004146833.1	7.6e-98	97.54	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-...	[more]
KAE8651298.1	7.6e-98	97.54	hypothetical protein Csa_002473 [Cucumis sativus]	[more]
XP_038878614.1	2.2e-97	97.04	ESCRT-related protein CHMP1B-like [Benincasa hispida]	[more]

BLAST of Carg04292 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	2.0e-93	88.67	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	5.9e-93	88.18	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	5.9e-85	83.90	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
O96552	1.1e-43	46.39	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]
Q5E994	2.5e-43	47.50	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1	[more]

BLAST of Carg04292 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KC50	1.4e-100	100.00	ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE...	[more]
A0A6J1GD16	1.4e-100	100.00	ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 ...	[more]
A0A6J1D4C5	9.7e-99	98.03	ESCRT-related protein CHMP1B-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7V1A1	3.7e-98	97.54	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LIG8	3.7e-98	97.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1	[more]

BLAST of Carg04292 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	1.4e-94	88.67	SNF7 family protein	[more]
AT1G17730.1	4.2e-94	88.18	vacuolar protein sorting 46.1	[more]
AT2G06530.1	1.4e-09	25.86	SNF7 family protein	[more]
AT5G44560.1	4.3e-06	22.39	SNF7 family protein	[more]
AT5G44560.2	1.6e-05	22.56	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..45
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	GENE3D	6.10.140.1230		coord: 3..173 e-value: 3.8E-39 score: 136.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..191
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 5..203
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..203
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 11..172 e-value: 3.8E-12 score: 46.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04292-RA	Carg04292-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005771	multivesicular body