Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCAGCAGAAGAACACCAATCCAAACCAGGTCTCTTCGATCAAATCCTCCCTCCCCGTCTCGAAGACGCTGGACTCGAGGACTGTGCCCTTCCTCCCGATTCTATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCTATCAAATCCACGGCCACCGCCTTTCTTTCCTCCGACGACGGCGAAGATTCCGATGGCTACGGTGTCGAGGATAACTGGTCGCCTACTGCGTCTCTACCTACCGATGTCGTCACTGGAATCTTGCCGGAACTGGATCCTCCGGCAGCTTGCGCGACGGATAAGGGATTGAAACTGCCGGAGTTTAATGTCGATGGGGTCGTAGTAGGGGGAATGGAGGAGAGGAGAGGAAAGGGTTGTGTGGTAGATGTATTGGAAGGGTTGGAGGTTGGAGATGAAGCCAAGAAGAAGAAGAAGAGCGGTGAAGAAGAAGAGCAACCTATTTTAGCGGAAGGTTTTGCTTTAAATTCTGCAGTTTAA
mRNA sequence
ATGGACGCAGCAGAAGAACACCAATCCAAACCAGGTCTCTTCGATCAAATCCTCCCTCCCCGTCTCGAAGACGCTGGACTCGAGGACTGTGCCCTTCCTCCCGATTCTATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCTATCAAATCCACGGCCACCGCCTTTCTTTCCTCCGACGACGGCGAAGATTCCGATGGCTACGGTGTCGAGGATAACTGGTCGCCTACTGCGTCTCTACCTACCGATGTCGTCACTGGAATCTTGCCGGAACTGGATCCTCCGGCAGCTTGCGCGACGGATAAGGGATTGAAACTGCCGGAGTTTAATGTCGATGGGGTCGTAGTAGGGGGAATGGAGGAGAGGAGAGGAAAGGGTTGTGTGGTAGATGTATTGGAAGGGTTGGAGGTTGGAGATGAAGCCAAGAAGAAGAAGAAGAGCGGTGAAGAAGAAGAGCAACCTATTTTAGCGGAAGGTTTTGCTTTAAATTCTGCAGTTTAA
Coding sequence (CDS)
ATGGACGCAGCAGAAGAACACCAATCCAAACCAGGTCTCTTCGATCAAATCCTCCCTCCCCGTCTCGAAGACGCTGGACTCGAGGACTGTGCCCTTCCTCCCGATTCTATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCTATCAAATCCACGGCCACCGCCTTTCTTTCCTCCGACGACGGCGAAGATTCCGATGGCTACGGTGTCGAGGATAACTGGTCGCCTACTGCGTCTCTACCTACCGATGTCGTCACTGGAATCTTGCCGGAACTGGATCCTCCGGCAGCTTGCGCGACGGATAAGGGATTGAAACTGCCGGAGTTTAATGTCGATGGGGTCGTAGTAGGGGGAATGGAGGAGAGGAGAGGAAAGGGTTGTGTGGTAGATGTATTGGAAGGGTTGGAGGTTGGAGATGAAGCCAAGAAGAAGAAGAAGAGCGGTGAAGAAGAAGAGCAACCTATTTTAGCGGAAGGTTTTGCTTTAAATTCTGCAGTTTAA
Protein sequence
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDDGEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEERRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV
Homology
BLAST of Carg04262 vs. NCBI nr
Match:
XP_022949149.1 (uncharacterized protein LOC111452587 [Cucurbita moschata] >KAG7036479.1 hypothetical protein SDJN02_00096, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 327.8 bits (839), Expect = 5.4e-86
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE
Sbjct: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 166
RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV
Sbjct: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 165
BLAST of Carg04262 vs. NCBI nr
Match:
KAG6606765.1 (hypothetical protein SDJN03_00107, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 325.9 bits (834), Expect = 2.1e-85
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE
Sbjct: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 166
RRGKGCVVDVLEGLEVGDEAKKKK SGEEEEQPILAEGFALNSAV
Sbjct: 121 RRGKGCVVDVLEGLEVGDEAKKKKNSGEEEEQPILAEGFALNSAV 165
BLAST of Carg04262 vs. NCBI nr
Match:
XP_023523630.1 (uncharacterized protein LOC111787807 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
G+DSDGYGVEDNWSP ASLPTDVVTGILPELDPPAACATDKGLKLPEF+VDGVVVGGMEE
Sbjct: 61 GDDSDGYGVEDNWSPIASLPTDVVTGILPELDPPAACATDKGLKLPEFDVDGVVVGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 166
RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV
Sbjct: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 165
BLAST of Carg04262 vs. NCBI nr
Match:
XP_022998076.1 (uncharacterized protein LOC111492831 [Cucurbita maxima])
HSP 1 Score: 272.3 bits (695), Expect = 2.7e-69
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSI EAFFKAASAIKSTAT FLSSD+
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSICEAFFKAASAIKSTATGFLSSDE 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
G+DSDGYGVED WSPTA+L TDVVTGI PELDPPAACATDKGLKLPEF++DGVVVGGMEE
Sbjct: 61 GDDSDGYGVEDKWSPTAALSTDVVTGIWPELDPPAACATDKGLKLPEFDLDGVVVGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKS 147
RRGKGC VDVLEGLEVGDEAKKKKKS
Sbjct: 121 RRGKGCAVDVLEGLEVGDEAKKKKKS 146
BLAST of Carg04262 vs. NCBI nr
Match:
XP_008447517.1 (PREDICTED: uncharacterized protein LOC103489947 [Cucumis melo] >KAA0050786.1 uncharacterized protein E6C27_scaffold404G00370 [Cucumis melo var. makuwa] >TYK08560.1 uncharacterized protein E5676_scaffold323G001030 [Cucumis melo var. makuwa])
HSP 1 Score: 231.5 bits (589), Expect = 5.3e-57
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAE H +P FDQILPPRLEDAGLED ALPPDSIREAFFKAASA+KS ATA LS DD
Sbjct: 1 MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
++ +D WSPT++LPTD+VTGILP+ D PA CAT KGLKLPEF D VV+GGMEE
Sbjct: 61 DDE------DDPWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFA 161
RRGK CVVD LEGLE+GDEA+K+KKSG+EEE+PIL EGFA
Sbjct: 121 RRGKACVVDGLEGLEIGDEAEKEKKSGKEEEKPILGEGFA 154
BLAST of Carg04262 vs. ExPASy TrEMBL
Match:
A0A6J1GBZ4 (uncharacterized protein LOC111452587 OS=Cucurbita moschata OX=3662 GN=LOC111452587 PE=4 SV=1)
HSP 1 Score: 327.8 bits (839), Expect = 2.6e-86
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE
Sbjct: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 166
RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV
Sbjct: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSAV 165
BLAST of Carg04262 vs. ExPASy TrEMBL
Match:
A0A6J1K989 (uncharacterized protein LOC111492831 OS=Cucurbita maxima OX=3661 GN=LOC111492831 PE=4 SV=1)
HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSI EAFFKAASAIKSTAT FLSSD+
Sbjct: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSICEAFFKAASAIKSTATGFLSSDE 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
G+DSDGYGVED WSPTA+L TDVVTGI PELDPPAACATDKGLKLPEF++DGVVVGGMEE
Sbjct: 61 GDDSDGYGVEDKWSPTAALSTDVVTGIWPELDPPAACATDKGLKLPEFDLDGVVVGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKS 147
RRGKGC VDVLEGLEVGDEAKKKKKS
Sbjct: 121 RRGKGCAVDVLEGLEVGDEAKKKKKS 146
BLAST of Carg04262 vs. ExPASy TrEMBL
Match:
A0A5A7U9B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001030 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAE H +P FDQILPPRLEDAGLED ALPPDSIREAFFKAASA+KS ATA LS DD
Sbjct: 1 MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
++ +D WSPT++LPTD+VTGILP+ D PA CAT KGLKLPEF D VV+GGMEE
Sbjct: 61 DDE------DDPWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFA 161
RRGK CVVD LEGLE+GDEA+K+KKSG+EEE+PIL EGFA
Sbjct: 121 RRGKACVVDGLEGLEIGDEAEKEKKSGKEEEKPILGEGFA 154
BLAST of Carg04262 vs. ExPASy TrEMBL
Match:
A0A1S3BI85 (uncharacterized protein LOC103489947 OS=Cucumis melo OX=3656 GN=LOC103489947 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAE H +P FDQILPPRLEDAGLED ALPPDSIREAFFKAASA+KS ATA LS DD
Sbjct: 1 MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVVGGMEE 120
++ +D WSPT++LPTD+VTGILP+ D PA CAT KGLKLPEF D VV+GGMEE
Sbjct: 61 DDE------DDPWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEE 120
Query: 121 RRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFA 161
RRGK CVVD LEGLE+GDEA+K+KKSG+EEE+PIL EGFA
Sbjct: 121 RRGKACVVDGLEGLEIGDEAEKEKKSGKEEEKPILGEGFA 154
BLAST of Carg04262 vs. ExPASy TrEMBL
Match:
A0A6J1DJR2 (uncharacterized protein LOC111021118 OS=Momordica charantia OX=3673 GN=LOC111021118 PE=4 SV=1)
HSP 1 Score: 191.0 bits (484), Expect = 3.8e-45
Identity = 108/178 (60.67%), Postives = 125/178 (70.22%), Query Frame = 0
Query: 1 MDAAEEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDD 60
MDAAE+ + K GLFD+ILPPRLEDAGLEDCALPPDSIREAF KAASA+KS AT+ LS
Sbjct: 1 MDAAEKLKPKAGLFDEILPPRLEDAGLEDCALPPDSIREAFAKAASAVKSRATSILS--- 60
Query: 61 GEDSDGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGLKLPEFNVDGVVV----- 120
SDG+ VED A TDVVTGI PE DPP CAT KG KLPEF D +V+
Sbjct: 61 ---SDGHCVEDPRPADAGESTDVVTGISPERDPPGPCATAKGAKLPEFGGDAMVIGGGEG 120
Query: 121 ---------GGMEERRGKGCVVDVLEGLEVGDEAKKKKKSGEEEEQPILAEGFALNSA 165
GG E+RRG+GCVVDVL+GLE+G++AK+K KSG PIL EGFA N++
Sbjct: 121 RGDEVVAVAGGTEKRRGQGCVVDVLQGLEIGEDAKEKDKSG----GPILGEGFASNNS 168
BLAST of Carg04262 vs. TAIR 10
Match:
AT1G15230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 92.4 bits (228), Expect = 3.6e-19
Identity = 68/161 (42.24%), Postives = 86/161 (53.42%), Query Frame = 0
Query: 5 EEHQSKPGLFDQILPPRLEDAGLEDCALPPDSIREAFFKAASAIKSTATAFLSSDDGEDS 64
E + + GL D ILPP L DAGLEDCALPP+SI+EAF KAA+A+KS A + D E+
Sbjct: 2 EATKERVGLLDTILPPALADAGLEDCALPPESIQEAFRKAANAVKSRAASIF---DHEEE 61
Query: 65 DGYGVEDNWSPTASLPTDVVTGILPELDPPAACATDKGL-KLPEFNVDGVVVGGMEERRG 124
DG + P ++ G E D C KG+ KL E G +V E G
Sbjct: 62 DGCLAD----PIPETADKIIVGGDNERD-TGPCLAGKGIEKLAESKQAGDLVVAGEGEEG 121
Query: 125 KGCVVDV----LEGLEVGDEAKKKKKSGEEEE-QPILAEGF 160
K CV + +EG+E E K + EEEE +PIL EGF
Sbjct: 122 KSCVDGLKDLDVEGIERSSEKKDQSDEDEEEEMKPILVEGF 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022949149.1 | 5.4e-86 | 100.00 | uncharacterized protein LOC111452587 [Cucurbita moschata] >KAG7036479.1 hypothet... | [more] |
KAG6606765.1 | 2.1e-85 | 99.39 | hypothetical protein SDJN03_00107, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023523630.1 | 2.3e-84 | 98.18 | uncharacterized protein LOC111787807 [Cucurbita pepo subsp. pepo] | [more] |
XP_022998076.1 | 2.7e-69 | 92.47 | uncharacterized protein LOC111492831 [Cucurbita maxima] | [more] |
XP_008447517.1 | 5.3e-57 | 73.75 | PREDICTED: uncharacterized protein LOC103489947 [Cucumis melo] >KAA0050786.1 unc... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GBZ4 | 2.6e-86 | 100.00 | uncharacterized protein LOC111452587 OS=Cucurbita moschata OX=3662 GN=LOC1114525... | [more] |
A0A6J1K989 | 1.3e-69 | 92.47 | uncharacterized protein LOC111492831 OS=Cucurbita maxima OX=3661 GN=LOC111492831... | [more] |
A0A5A7U9B5 | 2.6e-57 | 73.75 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3BI85 | 2.6e-57 | 73.75 | uncharacterized protein LOC103489947 OS=Cucumis melo OX=3656 GN=LOC103489947 PE=... | [more] |
A0A6J1DJR2 | 3.8e-45 | 60.67 | uncharacterized protein LOC111021118 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
Match Name | E-value | Identity | Description | |
AT1G15230.1 | 3.6e-19 | 42.24 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |