Carg04246 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04246
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome c oxidase subunit 5b-2, mitochondrial-like
Location	Carg_Chr01: 569812 .. 573773 (+)
RNA-Seq Expression	Carg04246
Synteny	Carg04246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCCAAAAGGCATCGAGAAGCTTAAGGGCGCGAGAGCGAAGAAAAGAGAGCCAAATTCGCCGTCGAAGGGGTGCGAAAGATCATAGACGGAGGATTCACCGATTTCAATCTACGATGTGGAGGAGATTGCTCTCTTCGCAGCTCAAAGCCCTAAAATCTCTTCCTTCATCATCGACGTCCGCATCCGCTCCGTTGGGATGCATTTCTCAAGCCACTCGACTCGCTGCTTCTTCTCGTGTTTCTCATTCCCCGTCCGTCTCGCTCTTCGCCCGCCATTACGCCTCTGATTCTGGTAGATCTTGCTGTCTTCTTCGGGTTTTAATTGTCCCTGTTACTGTATGTATGAGCACGAATGTGGATATATGAAACTAGTCTCGTGTGGTTGTTAATTTATTAGAATGTTTACGCGTGGATCGTTTGTTGTGTATTGTACAGTCTGTGTCGTTGTATGTGTAAATCTATGATATGTGAACGAAACTGCAAATGTGGAATTAGTCTCGCGTAGTTATTAATCGATTAGAATGTATATGCGTGCTTTGTTAAGTATTTTACAGTCTGTGAATTTATAATATGTGCTCGAATGTGGTTTTGATCTCGTGTGATTGTCAAATTTATTTTTCATTGTAGCTGATACTGGTCTGAAGAAGAAGGCAGAGGATGTAATACCAATCGTAACAGGACACGAGCGTGAAGAGCTTGAAGCTTCGCTTGAGGTGAAGTGTTTTTTGTATTTCTTGCTTACCTGGATCTCTTTCCGTTACGTGCTTTCCCCCCCTTTATTTGATGTTGTGAAATTCACCGGACTACAAAGTAAGTTGAAGTTCATGGCTTAATTGATCGATTCATTTTCGTTTTCACACGGAGTCTGGCATGGTAATTTTAGTTTCAGAAAATTGATCGGTTCATTTTCATTTTCCAACTGTCTGGTTTATGTTATTTGATAGGCTGGTCGCTGATCTATTTTTCATTTTGGACCTGAGTCTCATTTCAATTGGTTTAATGTTTGCAGGGAAGAGACATCCTTGATATAAATCATCCTGTTGGTCCCTTTGGAACTAAGGTTAGTGTGGTTTGTGATTAATTTTTTCGTCGCTTTTTTTTTTTGTCTGTTGGAAATAAATCAGACGCTTTAGCCTTTTATCCAAGGTTTATTTCATGTAGATTTCAAGGCATGACGAGATAGCAGTATACGTTGAGTTTACTTTCACTTGAATTTAAGCTACACTTTTGTTATGCTATCATGATATCTTCTCATGTCGAACTATTTCATTGAGGTCTCAGACGCCCAAAATCTTTGTGAACTGATATGAAATTTTGCTTCTAGTTATTTCCCTTTCTTTTCCTAATTATCCATGTCATTTAACTTTCTTTCATGCTCCAAGGTGTATCATAATTTTGGTTGGGGAGGAATTCTTTCCTCTTCATCAACCAAGGAGCTGACAGAAAACCTCTCCAATTGGTTTGAATCAGAAAAGAAGTGAAAATGCCGACTTCTTTGACTTTGTGCTACATTTAGAAGCAAGAAATTATGCAAGTTCCTCAATATCTATCTCACGCATTTTCTCTAAGATTCTATTTTTCTTCACCAGCCCACTAACCTAAATCAAGTCCTGGAAAATTGGGTCATTCAAGGAATTTTAGGCTTCCTTTTAAAGCTATAACCAAGAATCTTAGGCTCCTCTTCTAAAACCTACCTTTTGCATCTAGAATGAAGTCCTATTGTTCGTTTTGAACCAGTTTTATTTTATCTGGTCTAAACGGCTTTTTGTTTTTTAAAGTTGTGCTTGTGATTGGCTGCAAAAATAGTGGCTGTTTTGATCCCTTTCTCTGAACTCGTAACTGTTGTTTACTTGTTACAAAGCACATGAATTTGGCTCAGATCCTCTTTCACTTTGATTTTCAAAATCAAGTTTGGAAAATGCTGAATTCTTTGTTTCTGGTTAGTTTGTACCTTGTATTTATTTTGTATCTATGACTTTGACCATTCACCTATTCGCTTTTGTCCAAAAACCACTCACTTCTTCCCATGAAGCCTTTGACTTCTTTGCTCTTTATAGCGTCTGTGCGTCACGCATAGAAATTAAGTGGTAGTGTATGTGAATGAAAGTAGGATTTTTCGTGCATGACTTATTTTTTGGAGAAATCTCAATACTTATTATTTCTTTAGGAGGAACCTGCTGTTATCAAATCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGTGGTGGGTACCTGCAATCTCTTCTTTTCCATGCCTTTTCATAAGTGTTGCGCTGTCTGATATAGACAAATTTTGTGTTCTTCAATTACACTGGAATTTCCATCTTAGTTCTGTTGCTTCCTTTCTTATTGTAGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAGGAAGGATGTACCCCATGAATGTCCTGTCTGCTCACAGTACTTTGTGGTGAGAACTTTTAAATTATTGTTGTTCAGTTGGCACGATATTAAATGCTGGATTTTTTACCTTACTATATAGAGCTTCATGAGGAGGAGGGAACTAACACCCCTTGCCAGATCCCAAATTTCTTGCCACTTTTTAGCTTCACCTTGAAAACTCCTACTGTTTCTTTCCAACAAAACCCCCATCATAAATCCCGGATTCTATACCTTCACAAAATTTGGCATTCTCCAACCAGCTTGTTCAAGTATAGCTGCATGTGAAGGGAAGGACACGCATTAGTGAAAATACCAACGGTCATTATCGTAACTGTGAAAAACGTTTTGATCTAATTTTGCAAAAAAAAATTTCAAATTCTTTTACGATGTTTGGGTACATGACCAAAAATGCTTCGATTGTAATGAAATCACGCCCTTTGAGATGTAAACTATAAATATTCTTTTCAAATACATGTATGTGTGGGTGTTCCACTTAAAAAACCTACTCTATAACGTGTTCCATTTAGGGATTAGAGTTTCTCTCTGTCTCTCTCTTCCATGTTATCACACTTTCTCCTTTGATAGGATGGAGGTTTGTTGTCTAAAATTACTTATCCAGTTGCAGACTTCTCCTAATCGTAATTTGTGTTCCCAGCTGGAGGTGGTTGGCCCTGGAGGATCGCCGGATGGTTATGGAGATGATGATCATCAGCATTAATTGCAACCATGCCCTTTCCTAGAATAAACCTTGGCTTTTAGAAGAGACAAATTTCACAATATGCTGCAGTTCTCATTTAAAGCTGTGGCTTGTTTGTTTTCTGCGGGTTCTTGTTCTTGCGGTAGTTCCTTCGTCAACAAAGGAATCTGATTTTTTTCGGTAAGTCATCTGCTAGAAGTACGGCTTTTAAAAACTTTTCTTCTATGCGTTTCAAAATAATTGGAGGCTTCTCTCTCAATTCTTTTTCCATTACCTTCCAGTACAAAACCCATTGATATAGAAAATAACTTCGAGAACTTACTAAAACCAGCCAGCCCAGTTAGGAAGTGTGAAATGGCTGTTGTACTGAAGTGGTTTTATGTACAATTCCTTTGTCACTTCTTTTGCAAATCTAAAATTTTGCATACTTGCCCTTTGCATTTTGTAATATTTTTTTTATAACCCACTTTGGCCTTCAAACCTCTCATCTTGATGGTATTGTGGTGTCGTAAGTCTTCTCTCACCATTATTGTAGAAAACTTGTGATGCTGCTCTGAAAGTTAATACATGTGGAAAGGAGACGGAATTTTTTATTTACGAGTGGTTTTCCATATTTTCTCTTCCACTTTTTTTTCCTACCTAAAAATCTTGGAAGGAAAATCATATTATTTAGGTGATTTCGTTTTCAGAAAATATAATTTAGGTATTGATATCCCAGCATTTTAGAACATAACGTAATTATTGAAATTTGGTATAATTACAACATTTTATTTAATAATATAGAAAGAAATAAAGAAGTTTGAAATTTCGTCCCAACCCTCGCCAAAGACGTCAATTTTTTTTATC

mRNA sequence

ATTTCCAAAAGGCATCGAGAAGCTTAAGGGCGCGAGAGCGAAGAAAAGAGAGCCAAATTCGCCGTCGAAGGGGTGCGAAAGATCATAGACGGAGGATTCACCGATTTCAATCTACGATGTGGAGGAGATTGCTCTCTTCGCAGCTCAAAGCCCTAAAATCTCTTCCTTCATCATCGACGTCCGCATCCGCTCCGTTGGGATGCATTTCTCAAGCCACTCGACTCGCTGCTTCTTCTCGTGTTTCTCATTCCCCGTCCGTCTCGCTCTTCGCCCGCCATTACGCCTCTGATTCTGCTGATACTGGTCTGAAGAAGAAGGCAGAGGATGTAATACCAATCGTAACAGGACACGAGCGTGAAGAGCTTGAAGCTTCGCTTGAGGGAAGAGACATCCTTGATATAAATCATCCTGTTGGTCCCTTTGGAACTAAGGAGGAACCTGCTGTTATCAAATCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGTGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAGGAAGGATGTACCCCATGAATGTCCTGTCTGCTCACAGTACTTTGTGCTGGAGGTGGTTGGCCCTGGAGGATCGCCGGATGGTTATGGAGATGATGATCATCAGCATTAATTGCAACCATGCCCTTTCCTAGAATAAACCTTGGCTTTTAGAAGAGACAAATTTCACAATATGCTGCAGTTCTCATTTAAAGCTGTGGCTTGTTTGTTTTCTGCGGGTTCTTGTTCTTGCGGTAGTTCCTTCGTCAACAAAGGAATCTGATTTTTTTCGGTAAGTCATCTGCTAGAAGTACGGCTTTTAAAAACTTTTCTTCTATGCGTTTCAAAATAATTGGAGGCTTCTCTCTCAATTCTTTTTCCATTACCTTCCAGTACAAAACCCATTGATATAGAAAATAACTTCGAGAACTTACTAAAACCAGCCAGCCCAGTTAGGAAGTGTGAAATGGCTGTTGTACTGAAGTGGTTTTATGTACAATTCCTTTGTCACTTCTTTTGCAAATCTAAAATTTTGCATACTTGCCCTTTGCATTTTGTAATATTTTTTTTATAACCCACTTTGGCCTTCAAACCTCTCATCTTGATGGTATTGTGGTGTCGTAAGTCTTCTCTCACCATTATTGTAGAAAACTTGTGATGCTGCTCTGAAAGTTAATACATGTGGAAAGGAGACGGAATTTTTTATTTACGAGTGGTTTTCCATATTTTCTCTTCCACTTTTTTTTCCTACCTAAAAATCTTGGAAGGAAAATCATATTATTTAGGTGATTTCGTTTTCAGAAAATATAATTTAGGTATTGATATCCCAGCATTTTAGAACATAACGTAATTATTGAAATTTGGTATAATTACAACATTTTATTTAATAATATAGAAAGAAATAAAGAAGTTTGAAATTTCGTCCCAACCCTCGCCAAAGACGTCAATTTTTTTTATC

Coding sequence (CDS)

ATGTGGAGGAGATTGCTCTCTTCGCAGCTCAAAGCCCTAAAATCTCTTCCTTCATCATCGACGTCCGCATCCGCTCCGTTGGGATGCATTTCTCAAGCCACTCGACTCGCTGCTTCTTCTCGTGTTTCTCATTCCCCGTCCGTCTCGCTCTTCGCCCGCCATTACGCCTCTGATTCTGCTGATACTGGTCTGAAGAAGAAGGCAGAGGATGTAATACCAATCGTAACAGGACACGAGCGTGAAGAGCTTGAAGCTTCGCTTGAGGGAAGAGACATCCTTGATATAAATCATCCTGTTGGTCCCTTTGGAACTAAGGAGGAACCTGCTGTTATCAAATCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGTGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAGGAAGGATGTACCCCATGAATGTCCTGTCTGCTCACAGTACTTTGTGCTGGAGGTGGTTGGCCCTGGAGGATCGCCGGATGGTTATGGAGATGATGATCATCAGCATTAA

Protein sequence

MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH

Homology

[Close]

BLAST of Carg04246 vs. NCBI nr
Match: XP_023523890.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6606780.1 Cytochrome c oxidase subunit 5b-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036493.1 Cytochrome c oxidase subunit 5b-2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 2.0e-94
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA
Sbjct: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV
Sbjct: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Carg04246 vs. NCBI nr
Match: XP_022949516.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 353.6 bits (906), Expect = 9.7e-94
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLL SQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA
Sbjct: 1   MWRRLLYSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV
Sbjct: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Carg04246 vs. NCBI nr
Match: XP_022998035.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 350.9 bits (899), Expect = 6.3e-93
Identity = 172/174 (98.85%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSSQLKALKSLPSSST ASAPLGCISQATRLAASSRVSHS SVSLFARHYASDSA
Sbjct: 1   MWRRLLSSQLKALKSLPSSSTPASAPLGCISQATRLAASSRVSHSSSVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV
Sbjct: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Carg04246 vs. NCBI nr
Match: KAA0038130.1 (cytochrome c oxidase subunit 5b-2 [Cucumis melo var. makuwa] >TYK20477.1 cytochrome c oxidase subunit 5b-2 [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83
Identity = 154/174 (88.51%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSS LK+LKSLPSSST ASAPLGCISQA RL A+S +S S +VSLFARHYASDSA
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAARLGAASHLSPSSTVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKE PAVIKSYYDER+V
Sbjct: 61  DTGLKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERIV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGE EDEHDVVWFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYGDDDH H
Sbjct: 121 GCPGGEDEDEHDVVWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Carg04246 vs. NCBI nr
Match: XP_038896495.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 318.2 bits (814), Expect = 4.5e-83
Identity = 155/174 (89.08%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSS LK+LKSLPSSST ASAPLG IS+ATR AA S VS SP+VSLFA HYASDSA
Sbjct: 1   MWRRLLSSPLKSLKSLPSSSTPASAPLGYISKATRRAAVSHVSPSPAVSLFASHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKK ED++PI TGHEREELEASLEG+DILDINHPVGPFGTKE PAVIKSYYDERLV
Sbjct: 61  DTGLKKKVEDIMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYGDDDH H
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Carg04246 vs. ExPASy Swiss-Prot
Match: Q9SSB8 (Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-2 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-53
Identity = 103/173 (59.54%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSV-SLFARHYASDS 60
           MWRR++SS LK++ ++   S +A +    + ++T L+ S+R S  P+  S+F+R   S +
Sbjct: 1   MWRRIVSSHLKSISAV--GSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAA 60

Query: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADT +KK+ EDV+PI TGHE+EEL+A LEGR + DI+ P GPFGTKE PAV+KSYYD R+
Sbjct: 61  ADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDH 173
           VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+GDD H
Sbjct: 121 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

[Close]

BLAST of Carg04246 vs. ExPASy Swiss-Prot
Match: Q9LW15 (Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-1 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.1e-53
Identity = 104/178 (58.43%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATR----LAASSRVSHSPSVSLFARHYA 60
           MWRR++SSQLK L    ++   A++P   I+  TR      A++R + S S  +  R ++
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFS 60

Query: 61  SDSADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYD 120
           SDS +T   KK EDV+PI TGHE+EELEA LEGR + DI+ P GPFGTKE PA++KSYYD
Sbjct: 61  SDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           +R+VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+GD+D +H
Sbjct: 121 KRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 174

[Close]

BLAST of Carg04246 vs. ExPASy Swiss-Prot
Match: Q9SSS5 (Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN=At1g52710 PE=3 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 83  LEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLRKDV 142
           L+    GR +LDI+HP  PFGTKE PAV++SY+D+R +GC GGEGED HDVVWF L K  
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 143 PHECPVCSQYFVLEVVGPGGSPDGYGDD-DHQH 175
             ECPVCSQYF        G PDG+GDD DH H
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

[Close]

BLAST of Carg04246 vs. ExPASy Swiss-Prot
Match: P00428 (Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus OX=9913 GN=COX5B PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.5e-09
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 76  TGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVW 135
           TG ERE + A+ +G+D  +I  P    GTKE+P ++ S  ++R+VGC     ED   V+W
Sbjct: 45  TGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIW 104

Query: 136 FRLRKDVPHECPVCSQYFVL 156
           F L K     CP C  ++ L
Sbjct: 105 FWLHKGEAQRCPSCGTHYKL 122

[Close]

BLAST of Carg04246 vs. ExPASy Swiss-Prot
Match: Q710D6 (Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes OX=9627 GN=COX5B PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.7e-09
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 76  TGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVW 135
           TG ERE + A+ +G D  +I  P    GTKE+P ++ S  ++R+VGC     ED   V+W
Sbjct: 44  TGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIW 103

Query: 136 FRLRKDVPHECPVCSQYFVL 156
           F L K     CP C  ++ L
Sbjct: 104 FWLHKGEAQRCPSCGTHYKL 121

[Close]

BLAST of Carg04246 vs. ExPASy TrEMBL
Match: A0A6J1GC81 (cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452844 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 4.7e-94
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLL SQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA
Sbjct: 1   MWRRLLYSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV
Sbjct: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Carg04246 vs. ExPASy TrEMBL
Match: A0A6J1KBJ1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492804 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.1e-93
Identity = 172/174 (98.85%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSSQLKALKSLPSSST ASAPLGCISQATRLAASSRVSHS SVSLFARHYASDSA
Sbjct: 1   MWRRLLSSQLKALKSLPSSSTPASAPLGCISQATRLAASSRVSHSSSVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV
Sbjct: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Carg04246 vs. ExPASy TrEMBL
Match: A0A5A7T437 (Cytochrome c oxidase subunit 5b-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00500 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.8e-84
Identity = 154/174 (88.51%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSS LK+LKSLPSSST ASAPLGCISQA RL A+S +S S +VSLFARHYASDSA
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAARLGAASHLSPSSTVSLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKE PAVIKSYYDER+V
Sbjct: 61  DTGLKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERIV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGE EDEHDVVWFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYGDDDH H
Sbjct: 121 GCPGGEDEDEHDVVWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Carg04246 vs. ExPASy TrEMBL
Match: A0A0A0LDH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G538670 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 150/174 (86.21%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLLSS LK+LKSLPSSST ASAPLGCISQA RLAA+S +S S ++ LFARHYASDSA
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAPRLAAASHLSPSSTLPLFARHYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
           DTGLKK  EDV+PI TGHEREELEASLEG+DILDINHP+GPFGTKE PAVIKSYYDER+V
Sbjct: 61  DTGLKKTVEDVMPIATGHEREELEASLEGKDILDINHPIGPFGTKEAPAVIKSYYDERIV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGE EDEHDV+WFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYGDDDH H
Sbjct: 121 GCPGGEDEDEHDVIWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Carg04246 vs. ExPASy TrEMBL
Match: A0A6J1IV42 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479582 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.2e-82
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSVSLFARHYASDSA 60
           MWRRLL+SQLK+LKSLPSSST ASAPLGCIS+ATRL A+S VS S  VSLFAR+YASDSA
Sbjct: 1   MWRRLLASQLKSLKSLPSSSTPASAPLGCISKATRLGAASHVSPSAPVSLFARYYASDSA 60

Query: 61  DTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLV 120
            TG+ KK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKE PAVIKSYYDERLV
Sbjct: 61  GTGV-KKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDG+GDDDH H
Sbjct: 121 GCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGFGDDDHHH 173

[Close]

BLAST of Carg04246 vs. TAIR 10
Match: AT1G80230.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-54
Identity = 103/173 (59.54%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRLAASSRVSHSPSV-SLFARHYASDS 60
           MWRR++SS LK++ ++   S +A +    + ++T L+ S+R S  P+  S+F+R   S +
Sbjct: 1   MWRRIVSSHLKSISAV--GSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAA 60

Query: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADT +KK+ EDV+PI TGHE+EEL+A LEGR + DI+ P GPFGTKE PAV+KSYYD R+
Sbjct: 61  ADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDH 173
           VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+GDD H
Sbjct: 121 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

[Close]

BLAST of Carg04246 vs. TAIR 10
Match: AT3G15640.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.6e-54
Identity = 104/178 (58.43%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATR----LAASSRVSHSPSVSLFARHYA 60
           MWRR++SSQLK L    ++   A++P   I+  TR      A++R + S S  +  R ++
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFS 60

Query: 61  SDSADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYD 120
           SDS +T   KK EDV+PI TGHE+EELEA LEGR + DI+ P GPFGTKE PA++KSYYD
Sbjct: 61  SDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           +R+VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+GD+D +H
Sbjct: 121 KRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 174

[Close]

BLAST of Carg04246 vs. TAIR 10
Match: AT3G15640.2 (Rubredoxin-like superfamily protein )

HSP 1 Score: 204.1 bits (518), Expect = 8.9e-53
Identity = 104/178 (58.43%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATR----LAASSRVSHSPSVSLFARHYA 60
           MWRR++SSQLK L    ++   A++P   I+  TR      A++R + S S  +  R ++
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFS 60

Query: 61  SDSADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYD 120
           SDS +T   KK EDV+PI TGHE+EELEA LEGR + DI+ P GPFGTKE PA++KSYYD
Sbjct: 61  SDS-ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 175
           +R+VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+GD+D +H
Sbjct: 121 KRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 173

[Close]

BLAST of Carg04246 vs. TAIR 10
Match: AT1G52710.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 7.6e-28
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 83  LEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLRKDV 142
           L+    GR +LDI+HP  PFGTKE PAV++SY+D+R +GC GGEGED HDVVWF L K  
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 143 PHECPVCSQYFVLEVVGPGGSPDGYGDD-DHQH 175
             ECPVCSQYF        G PDG+GDD DH H
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

The following BLAST results are available for this feature:

BLAST of Carg04246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523890.1	2.0e-94	100.00	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita pepo subsp. pep...	[more]
XP_022949516.1	9.7e-94	99.43	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita moschata]	[more]
XP_022998035.1	6.3e-93	98.85	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita maxima]	[more]
KAA0038130.1	2.0e-83	88.51	cytochrome c oxidase subunit 5b-2 [Cucumis melo var. makuwa] >TYK20477.1 cytochr...	[more]
XP_038896495.1	4.5e-83	89.08	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Benincasa hispida]	[more]

BLAST of Carg04246 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSB8	2.3e-53	59.54	Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9LW15	5.1e-53	58.43	Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSS5	1.1e-26	60.22	Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
P00428	4.5e-09	38.75	Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus OX=9913 GN=COX5B PE...	[more]
Q710D6	7.7e-09	38.75	Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes OX=9627 GN=COX5B...	[more]

BLAST of Carg04246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GC81	4.7e-94	99.43	cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1KBJ1	3.1e-93	98.85	cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]
A0A5A7T437	9.8e-84	88.51	Cytochrome c oxidase subunit 5b-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LDH6	3.2e-82	86.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G538670 PE=4 SV=1	[more]
A0A6J1IV42	9.2e-82	87.93	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]

BLAST of Carg04246 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80230.1	1.6e-54	59.54	Rubredoxin-like superfamily protein	[more]
AT3G15640.1	3.6e-54	58.43	Rubredoxin-like superfamily protein	[more]
AT3G15640.2	8.9e-53	58.43	Rubredoxin-like superfamily protein	[more]
AT1G52710.1	7.6e-28	60.22	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002124	Cytochrome c oxidase, subunit Vb	PFAM	PF01215	COX5B	coord: 75..161 e-value: 6.8E-17 score: 61.4
IPR002124	Cytochrome c oxidase, subunit Vb	PANTHER	PTHR10122	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	coord: 1..174
IPR002124	Cytochrome c oxidase, subunit Vb	PROSITE	PS51359	COX5B_2	coord: 62..162 score: 20.716663
IPR002124	Cytochrome c oxidase, subunit Vb	CDD	cd00924	Cyt_c_Oxidase_Vb	coord: 64..160 e-value: 2.44487E-34 score: 114.703
IPR036972	Cytochrome c oxidase, subunit Vb superfamily	GENE3D	2.60.11.10	Cytochrome c oxidase, subunit Vb	coord: 65..158 e-value: 2.1E-28 score: 100.1
None	No IPR available	PANTHER	PTHR10122:SF16	SUBFAMILY NOT NAMED	coord: 1..174
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 65..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04246-RA	Carg04246-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005740	mitochondrial envelope