Carg04239 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04239
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger (Ran-binding) family protein
Location	Carg_Chr01: 602849 .. 604138 (+)
RNA-Seq Expression	Carg04239
Synteny	Carg04239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACCCATTCTTCTTTCTTTCTGTTTTAACCCCAACCATTCCCCTTTCACTTAAGGTTTCTTCTTCTTCCATTCTTCCATTCAAATTTTTCGACCCGTTCGTCCTAACGTTATAGTCTTTTGTTTTATTTGAAACACGAACAAAACTAATTTTTATTTTTTTTTTAAATTATAAGTTTAGTTTTTTAATTTTAAAATTTAAATAATAGCTCATTCATTTTGAAATGTTAAATTTGCGTTTAAATTCATAAATTTTAAACTTTTTTTTTTTTTTTTTAAATTTAAAGATTTATTAAATTCATGAAATATGTGTTGACCGTTATAATCTAATCTGCAGAGAGAAGAGGAGAGAAAATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCCACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTACCCCTAACTCTCCTGCCATCAAAAATTTTAAACGTAATTTTTTTTTCACCTTAATTTTTAATTTTATGAGTTTTCAAATGAAATTAATTTCTTTTATTAAAAAAAAAATGAAATATGAAATGAGGCCCATTTATTTTTTAAAAAAAGATACTAAAATGTAAAGAAACAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATTAACAAAGCCAACGTCCTCCTTCATCAAGTTTTGGGTACGTGCTTTAACATAAATAATTTAAAAAAATGAAAAATTTTATGTTATTTACTTATTTATGTATTTATTTATTTGCAGGTATGCTTCGAAGAGAGCAAATTTGAAAGAGACTTCATAGCCAGCACTAGCCTTCTTCTTCTTTCTTTTAGTTTCTTTAGTTTTCTTATTATTATTATTTTTTGTAACTTTTATCTTTTCTGGATGATGCTATTTCAGTGATAAAAAATTGAGATATTATC

mRNA sequence

ATACCCATTCTTCTTTCTTTCTGTTTTAACCCCAACCATTCCCCTTTCACTTAAGAGAGAAGAGGAGAGAAAATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCCACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATGCTTCGAAGAGAGCAAATTTGAAAGAGACTTCATAGCCAGCACTAGCCTTCTTCTTCTTTCTTTTAGTTTCTTTAGTTTTCTTATTATTATTATTTTTTGTAACTTTTATCTTTTCTGGATGATGCTATTTCAGTGATAAAAAATTGAGATATTATC

Coding sequence (CDS)

ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCCACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATGCTTCGAAGAGAGCAAATTTGAAAGAGACTTCATAG

Protein sequence

MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS

Homology

[Close]

BLAST of Carg04239 vs. NCBI nr
Match: KAG7036500.1 (hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS 175
           AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS 174

[Close]

BLAST of Carg04239 vs. NCBI nr
Match: XP_023525213.1 (transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.8 bits (891), Expect = 5.3e-92
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 163

[Close]

BLAST of Carg04239 vs. NCBI nr
Match: XP_022948549.1 (periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 3.8e-90
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 300

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Carg04239 vs. NCBI nr
Match: XP_022948551.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 3.8e-90
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Carg04239 vs. NCBI nr
Match: XP_022998918.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Carg04239 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-05
Identity = 44/139 (31.65%), Postives = 48/139 (34.53%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDP-----KSGGGGCDFGALL---NGGGRGGSGF-- 62
           RPGDWNC  C   NFQRR  C RC  P      +  G   F       N  G G S F  
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  GYGGS-----------------------------------DVRPGDWYCSIGNCGAHNFA 97
            YGGS                                     R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

[Close]

BLAST of Carg04239 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 32/73 (43.84%), Postives = 35/73 (47.95%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPG 62
           R GDW C SC + NF  R+ C RC  PK    G D G+   GGG G  G G GG   R  
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPK----GDDEGSSGGGGGGGYGGGGGGGGYDRGN 334

Query: 63  DWYCSIGNCGAHN 76
           D     G  G HN
Sbjct: 335 D--RGSGGGGYHN 341

[Close]

BLAST of Carg04239 vs. ExPASy TrEMBL
Match: A0A6J1GA82 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 300

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Carg04239 vs. ExPASy TrEMBL
Match: A0A6J1G9I4 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Carg04239 vs. ExPASy TrEMBL
Match: A0A6J1K9C2 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.4e-90
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 300

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AAARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Carg04239 vs. ExPASy TrEMBL
Match: A0A6J1KI51 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.4e-90
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP AA
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANP-AA 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           AAARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Carg04239 vs. ExPASy TrEMBL
Match: A0A6J1DJ84 (TATA-binding protein-associated factor 2N-like OS=Momordica charantia OX=3673 GN=LOC111021028 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.4e-75
Identity = 140/163 (85.89%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRD CQRCGDPKS  GG DFG L+NGGGRGGS FGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDTCQRCGDPKS--GGADFGGLMNGGGRGGSAFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120
           PGDWYC++GNCGAHNFASRSSCFKCGAFKDDM    GGFDFD+PRSRG S FGFAN    
Sbjct: 61  PGDWYCTVGNCGAHNFASRSSCFKCGAFKDDM--LGGGFDFDLPRSRGTS-FGFAN-GTG 120

Query: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 164
           A  RTGASAWKSGDWICARSGCNEHNFASRMECFRCSAP+DSY
Sbjct: 121 AGGRTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY 157

[Close]

BLAST of Carg04239 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 4.7e-54
Identity = 109/173 (63.01%), Postives = 119/173 (68.79%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---GGCDFGALLNGGGRGGSGFGY-GG 60
           MSRPGDWNCRSC HLNFQRRD CQRCGD +SG    GG DFG   N GGR  S FG+  G
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFG---NFGGRAMSAFGFTTG 60

Query: 61  SDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGG--------FDFDMPRSRG 120
           SDVRPGDWYC++GNCG HNFASRS+CFKCG FKD+  A  GG        FD D+ RSR 
Sbjct: 61  SDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSR- 120

Query: 121 LSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 162
                            G S+WKSGDWIC R GCNEHNFASRMECFRC+AP+D
Sbjct: 121 ------------VPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

[Close]

BLAST of Carg04239 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 194.1 bits (492), Expect = 9.2e-50
Identity = 104/169 (61.54%), Postives = 121/169 (71.60%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNG-GGRG-GSGFGYG-GS 60
           M+RPGDWNCR C HLNFQRRD CQRC +P+ GG   D   LL+G GGR   S FG+  G 
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTD---LLSGFGGRPVSSSFGFNTGP 60

Query: 61  DVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS-----AAAGGFDFDMPRSRGLSPF 120
           DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S     A  G  D ++   RGL  F
Sbjct: 61  DVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGL--F 120

Query: 121 GFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 162
           GF   +++    TG S WKSGDWIC RSGCNEHNFASR ECFRC+APK+
Sbjct: 121 GFGG-SSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Carg04239 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-28
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDW 64
           GDW C +CQH NF++R+ CQ+CG PK GG                S + Y  ++V  GDW
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFGGVDV-------------STYLYNRTEVMAGDW 65

Query: 65  YCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAAAAAR 124
           YC   NCG+HN+ASR+SC++CG  K + +           +  G     + N  AA    
Sbjct: 66  YCGALNCGSHNYASRTSCYRCGMIKVEYT----------EQYYGAQMVAYGNDGAAC--- 125

Query: 125 TGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 162
                WK+GDW+C R GC  HN+ASR ECF+C   +D
Sbjct: 126 --PPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Carg04239 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09
Identity = 57/216 (26.39%), Postives = 79/216 (36.57%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG-------GCDFGALLNGGGRGGSGFG 60
           + R GDW C  C + N+  R+ C++CG  K           G      L+   RG     
Sbjct: 46  LPRIGDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHD 105

Query: 61  YGGS---------------DVRPGDWYCSIGNCGAHNFASRSSCFKCGAF------KDDM 120
             GS               + R GDW C    CG HN++SR  C KC            +
Sbjct: 106 QPGSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRL 165

Query: 121 SAAAGGFDFDMPRSR-----------------GLS---------PFGFANP-AAAAAART 162
           ++ A   ++D  R                   G+S         P  F    +  A    
Sbjct: 166 ASEALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGM 225

[Close]

BLAST of Carg04239 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.4e-04
Identity = 23/83 (27.71%), Postives = 31/83 (37.35%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPG 62
           + GDW C++C  LNF +   C RC D  +                           + PG
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDKPT------------------------LRQINPG 335

Query: 63  DWYCSIGNCGAHNFASRSSCFKC 86
           +W C   +C   NF   S C KC
Sbjct: 339 EWECE--SCNYINFRRNSICLKC 335

The following BLAST results are available for this feature:

BLAST of Carg04239 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036500.1	1.5e-97	100.00	hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023525213.1	5.3e-92	100.00	transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pe...	[more]
XP_022948549.1	3.8e-90	99.39	periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 pe...	[more]
XP_022948551.1	3.8e-90	99.39	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata]	[more]
XP_022998918.1	1.1e-89	98.77	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg04239 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.0e-05	31.65	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	7.4e-04	43.84	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]

BLAST of Carg04239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA82	1.9e-90	99.39	periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G9I4	1.9e-90	99.39	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=36...	[more]
A0A6J1K9C2	5.4e-90	98.77	periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KI51	5.4e-90	98.77	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1DJ84	8.4e-75	85.89	TATA-binding protein-associated factor 2N-like OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Carg04239 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	4.7e-54	63.01	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	9.2e-50	61.54	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	5.8e-28	39.49	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	6.0e-09	26.39	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	3.4e-04	27.71	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 62..88 e-value: 9.5E-5 score: 31.8 coord: 133..159 e-value: 2.1E-5 score: 34.0 coord: 5..29 e-value: 9.1E-5 score: 31.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 60..87 e-value: 1.5E-5 score: 24.2 coord: 3..31 e-value: 0.0016 score: 17.7 coord: 131..160 e-value: 1.4E-10 score: 40.3
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 64..85
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 135..156
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 60..91 score: 9.890478
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 131..162 score: 10.545425
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.777556
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..33 e-value: 3.2E-10 score: 41.1 coord: 56..91 e-value: 3.3E-12 score: 47.5 coord: 124..162 e-value: 9.1E-13 score: 49.2
None	No IPR available	PANTHER	PTHR23111:SF74	OS02G0203700 PROTEIN	coord: 1..165
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..165
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 126..162
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 52..91
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04239-RA	Carg04239-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding