Carg04234 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04234
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	embryo-specific protein ATS3B-like
Location	Carg_Chr01: 621077 .. 623190 (-)
RNA-Seq Expression	Carg04234
Synteny	Carg04234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGAAGAGATGTATTAGAAAAATGTCTCCAACGCTCGGGTGATTCTCGTGGCAGTTGGGAGTTCGCGTGGCTTTATATTTAAGAGCCCTTCAATAATCGCAGTGCATAGCAGAGCATAGAGGCCATGGAATCCTTCAAGAAAGCAACTATTTCCCTCTATTTCCTCCTGGTCCTCTTCGGCTTCTCAGAATCTTCTCGATCCATCCTTCCCCACCCACAGTCGAAGCCACAGCCTCTTCAATCCTTCAAGATCAACAATACCCAGGTGAGCAATTGCGATTTGTTTTAACCACAATTGTTCTTACGATCGAGACCGCGCCATTTTTTCCCCCAGAAAAATTGGGGGAAAAACCATCATGAATGTGTTTAACCGTTCAAATTAGAATCACCCATTTGTTCGTTTCGTAGAAATTTGCAGTGTGTGGTTTGATTTTCTGCTCTGGTGATGAATAATCGATGTGGGTTTTTGCGTTATTGGCGTAATTTTAGACTTAAAGACTCGTGAACCCTTTCCTTGTTGTTGTTGTTGTTTTTTGTGTTTGTATAGAATGCTAGGAGCTGTTCGTACACGGTGACGATTAAAACAAGCTGTGGATCACCTGTTTATACTCGAGACCAGATCAGTATTGCATTTGGGGATGCTTATGGCAATCAGGTATTTTCTCATTTTGGAATAGAATTTCACTCCCAATGTAAAATCAGTACTGTTCCATATTATCTTTTGTGATTTCTGTTGAACATTGTGTGTATATGGTTAAGTATGAGCATAGAAATCTGGGGATTGTCTGATGAACAGTGATCCAATTTCATCTAACTCAACCCCATACTTCTTGAAAACATGTTGACATTAGGCCTATAGTGTTTGATATTTAGTTTTTGACAATTAAGCATATAAACACTACTTATTCAAAATGAAATCATCATGAAATGAGTCTGTAGTACTCTCAATTATATTTCTGCTTTTAAAGATTTGTGGTTTGTTGTAGATAATGGATGGTGCTACTTTCGTAGTTGTTTGTGTTGGATTTGTGGTATTTTGTTGAGTTTAGTCCCTTTTATGGATATAGTTCATGGACTAAAAAGGATCAAAATAGCTGTTTCATTAATAATTACGAAGAACAGAGATGAACACATATTTTGTTATCAAGATTTGTATGCAGGTTTAGAATGTTTCTGGAAAATCAAGCGAACTTTGATCTAAAAACTCAGAAATAGGAAATGACTAAACTAGTACTTTGATCGCACTATAATTTTTGCTTAAAAGCTCGTTCGACTTTATGTCATTTTTAAATGATGCTGATGTGGTTGACAATGAACGAGAGTAGTACTCTCATTCCTGTAGTATAAGAAAGTTTCGGGTTGGTTTAATTCTTTTTGAGTTATTTTCTTCCTCATTTCCATTGTTCTCAAAATGCCTACTTGTTCATCAAACATTATGCGACTGATTAGGTATACATACCAAGGATTGACGATCCATCTTCAAGGGCATTCGAGCGCTGCTCTACAGACAAATACGAGTTAAACGGACCGTGCACATATCCGATATGCTATGTATACCTCTACAGGAGAGGATACAACGGATGGGTAGTGGACAAAGTAACCATCTATAGTTACTCTTCGAGAAGATCGGTTACGTACAACTACAGAGCGATGATCCCGAATGATGTATGGTTTGGTTTTAATTTCTGCTCTGGGTATCATGATGAAGCTGTGGGATCTACTGCAGCAATGTAAAAGGATTGAGTTGAAAATGTGAAGCTCTGAGTGAGAGCTATAAACGATGTGTACCGGAACTGTTTGTTGGAAATGTGTGGGTTAAATAAAGTGATGACATCTTTTGTATTTTGGAAATGAGGTTTCTTTTCTTGTGGGTTTAATTTCCCACCCTCTCTTCAATGGTGTAGCTCTTGCTGGTATTAAATTGAAACTTCTTGTATTTTTGTAAGGATCATAAGCTATATAATTTCTTTTAAGGAATACCCATGTCAGAATATCAACCCGAGCATAGTTCAATGTCCAAGATATCTATAGATAAAAACGTTTCTTATTGAAGCACTTGTAAGAGGCGCCCATGTAATAGTCTACACAAGGAATGCTTCGTTTTTTCTGTCC

mRNA sequence

AAAGGAAGAGATGTATTAGAAAAATGTCTCCAACGCTCGGGTGATTCTCGTGGCAGTTGGGAGTTCGCGTGGCTTTATATTTAAGAGCCCTTCAATAATCGCAGTGCATAGCAGAGCATAGAGGCCATGGAATCCTTCAAGAAAGCAACTATTTCCCTCTATTTCCTCCTGGTCCTCTTCGGCTTCTCAGAATCTTCTCGATCCATCCTTCCCCACCCACAGTCGAAGCCACAGCCTCTTCAATCCTTCAAGATCAACAATACCCAGAATGCTAGGAGCTGTTCGTACACGGTGACGATTAAAACAAGCTGTGGATCACCTGTTTATACTCGAGACCAGATCAGTATTGCATTTGGGGATGCTTATGGCAATCAGGTATACATACCAAGGATTGACGATCCATCTTCAAGGGCATTCGAGCGCTGCTCTACAGACAAATACGAGTTAAACGGACCGTGCACATATCCGATATGCTATGTATACCTCTACAGGAGAGGATACAACGGATGGGTAGTGGACAAAGTAACCATCTATAGTTACTCTTCGAGAAGATCGGTTACGTACAACTACAGAGCGATGATCCCGAATGATGTATGGTTTGGTTTTAATTTCTGCTCTGGGTATCATGATGAAGCTGTGGGATCTACTGCAGCAATGTAAAAGGATTGAGTTGAAAATGTGAAGCTCTGAGTGAGAGCTATAAACGATGTGTACCGGAACTGTTTGTTGGAAATGTGTGGGTTAAATAAAGTGATGACATCTTTTGTATTTTGGAAATGAGGTTTCTTTTCTTGTGGGTTTAATTTCCCACCCTCTCTTCAATGGTGTAGCTCTTGCTGGTATTAAATTGAAACTTCTTGTATTTTTGTAAGGATCATAAGCTATATAATTTCTTTTAAGGAATACCCATGTCAGAATATCAACCCGAGCATAGTTCAATGTCCAAGATATCTATAGATAAAAACGTTTCTTATTGAAGCACTTGTAAGAGGCGCCCATGTAATAGTCTACACAAGGAATGCTTCGTTTTTTCTGTCC

Coding sequence (CDS)

ATGGAATCCTTCAAGAAAGCAACTATTTCCCTCTATTTCCTCCTGGTCCTCTTCGGCTTCTCAGAATCTTCTCGATCCATCCTTCCCCACCCACAGTCGAAGCCACAGCCTCTTCAATCCTTCAAGATCAACAATACCCAGAATGCTAGGAGCTGTTCGTACACGGTGACGATTAAAACAAGCTGTGGATCACCTGTTTATACTCGAGACCAGATCAGTATTGCATTTGGGGATGCTTATGGCAATCAGGTATACATACCAAGGATTGACGATCCATCTTCAAGGGCATTCGAGCGCTGCTCTACAGACAAATACGAGTTAAACGGACCGTGCACATATCCGATATGCTATGTATACCTCTACAGGAGAGGATACAACGGATGGGTAGTGGACAAAGTAACCATCTATAGTTACTCTTCGAGAAGATCGGTTACGTACAACTACAGAGCGATGATCCCGAATGATGTATGGTTTGGTTTTAATTTCTGCTCTGGGTATCATGATGAAGCTGTGGGATCTACTGCAGCAATGTAA

Protein sequence

MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKTSCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYLYRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM

Homology

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BLAST of Carg04234 vs. NCBI nr
Match: KAG7036504.1 (Embryo-specific protein ATS3B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 371.7 bits (953), Expect = 3.5e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL
Sbjct: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM
Sbjct: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 177

[Close]

BLAST of Carg04234 vs. NCBI nr
Match: KAG6606794.1 (Embryo-specific protein ATS3B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365.2 bits (936), Expect = 3.3e-97
Identity = 174/177 (98.31%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL
Sbjct: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGY+GWVVDKVTIYSYS RRSVTYNYRAMIPNDVWFGFN CSGYHDEAVGSTAAM
Sbjct: 121 YRRGYDGWVVDKVTIYSYSLRRSVTYNYRAMIPNDVWFGFNLCSGYHDEAVGSTAAM 177

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BLAST of Carg04234 vs. NCBI nr
Match: XP_023525938.1 (embryo-specific protein ATS3B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.7 bits (927), Expect = 3.6e-96
Identity = 174/177 (98.31%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL
Sbjct: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGY+GWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYH +AVGSTAAM
Sbjct: 121 YRRGYDGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYH-QAVGSTAAM 176

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BLAST of Carg04234 vs. NCBI nr
Match: XP_022949508.1 (embryo-specific protein ATS3B-like [Cucurbita moschata])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 171/177 (96.61%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQS+PQPLQSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSQPQPLQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKY+LNGPCTYPICYVYL
Sbjct: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYDLNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGY+GWVVDKVTIYSYSSRRSVTYNY+AMIPNDVWFGFNFCSGYH  AVGSTAAM
Sbjct: 121 YRRGYDGWVVDKVTIYSYSSRRSVTYNYKAMIPNDVWFGFNFCSGYHG-AVGSTAAM 176

[Close]

BLAST of Carg04234 vs. NCBI nr
Match: XP_022998818.1 (embryo-specific protein ATS3B-like [Cucurbita maxima])

HSP 1 Score: 350.9 bits (899), Expect = 6.4e-93
Identity = 168/177 (94.92%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQS+PQP QSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSQPQPHQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SC SPVYTRDQISIAFGDAYGNQVYIPRID+PSSRAFERCSTDKY+LNGPCTYPICYVYL
Sbjct: 61  SCASPVYTRDQISIAFGDAYGNQVYIPRIDNPSSRAFERCSTDKYDLNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGY+GWVVDKVTIYSYSSRRSVTYNY+AMIPNDVWFGFNFCSGYH +AVGSTAAM
Sbjct: 121 YRRGYDGWVVDKVTIYSYSSRRSVTYNYKAMIPNDVWFGFNFCSGYH-QAVGSTAAM 176

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BLAST of Carg04234 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-43
Identity = 81/166 (48.80%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 7   ATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQN-ARSCSYTVTIKTSCGSP 66
           A++ L+F L+ F F  S+          P   +SF ++  Q    +C+YTV I TSC S 
Sbjct: 2   ASVRLFFTLISFVFIISTSVYESKVLDPPHVAESFNVSLIQKLGNTCAYTVIISTSCSST 61

Query: 67  VYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYLYRRGY 126
            YTRDQIS+AFGD YGNQ+Y PR+DDPS++ FE+CS+D +++NGPCTY ICYVYLYR G 
Sbjct: 62  RYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGP 121

Query: 127 NGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAV 172
           +GW+ + V IYS+ S ++VT+ Y   +P  VW+GFN+C+   D  V
Sbjct: 122 DGWIPNTVKIYSHGS-KAVTFPYNTYVPESVWYGFNYCNSASDSNV 166

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BLAST of Carg04234 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-41
Identity = 82/154 (53.25%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  FLLVLFGFSESSRSILPHPQSKPQPLQSF-KINNTQNARSCSYTVTIKTSCGSPVYTRDQ 72
           F L  F    S+RS +    +KP P+ SF      +NA +CSYTV IKTSC S  YTRD+
Sbjct: 11  FALCSFTLFSSARSFI---TTKPLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDK 70

Query: 73  ISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYLYRRGYNGWVVD 132
           ISI+FGD YGN+VY+ R+DDPSSR FE+CS+D Y+++GPC   +CY+YL R+G +GW  +
Sbjct: 71  ISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPE 130

Query: 133 KVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSG 166
            V IY  SS RSVT+ Y   +PN VW+GFN C+G
Sbjct: 131 NVKIYG-SSIRSVTFYYNLFLPNSVWYGFNVCNG 160

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BLAST of Carg04234 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-20
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 51  SCSYTVTIKTSCGSPVYTRDQISIAFGDAYGNQVYIPRIDD--PSSRAFERCSTDKYELN 110
           +C YTV + TSC SP  TRDQISI FGDA GN+VY P++           +CST+ +++ 
Sbjct: 33  TCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQVR 92

Query: 111 GPC-TYPICYVYLYRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPN-DVWFGFNFCS 165
           G C   PIC +Y+ R G +GWV + + IYS  S +SV +++   +P  + W+G N C+
Sbjct: 93  GQCLNDPICSLYINRNGPDGWVPESIEIYSEGS-KSVKFDFSKSVPQLNTWYGHNNCN 149

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BLAST of Carg04234 vs. ExPASy TrEMBL
Match: A0A6J1GCA3 (embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111452835 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.7e-95
Identity = 171/177 (96.61%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQS+PQPLQSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSQPQPLQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKY+LNGPCTYPICYVYL
Sbjct: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYDLNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGY+GWVVDKVTIYSYSSRRSVTYNY+AMIPNDVWFGFNFCSGYH  AVGSTAAM
Sbjct: 121 YRRGYDGWVVDKVTIYSYSSRRSVTYNYKAMIPNDVWFGFNFCSGYHG-AVGSTAAM 176

[Close]

BLAST of Carg04234 vs. ExPASy TrEMBL
Match: A0A6J1KHT8 (embryo-specific protein ATS3B-like OS=Cucurbita maxima OX=3661 GN=LOC111493367 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.1e-93
Identity = 168/177 (94.92%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           MESFKKATISLYFLLVLFGFSESSRSILPHPQS+PQP QSFKINNTQNARSCSYTVTIKT
Sbjct: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSQPQPHQSFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SC SPVYTRDQISIAFGDAYGNQVYIPRID+PSSRAFERCSTDKY+LNGPCTYPICYVYL
Sbjct: 61  SCASPVYTRDQISIAFGDAYGNQVYIPRIDNPSSRAFERCSTDKYDLNGPCTYPICYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YRRGY+GWVVDKVTIYSYSSRRSVTYNY+AMIPNDVWFGFNFCSGYH +AVGSTAAM
Sbjct: 121 YRRGYDGWVVDKVTIYSYSSRRSVTYNYKAMIPNDVWFGFNFCSGYH-QAVGSTAAM 176

[Close]

BLAST of Carg04234 vs. ExPASy TrEMBL
Match: A0A5A7TNJ2 (Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001700 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.6e-73
Identity = 140/177 (79.10%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           ME+ KKATIS  FL  +F FSESSRSIL  P   PQPL+SFKINNTQNARSCSYTVTIKT
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPH--PQPLESFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SC SP YTRD ISIAFGDAYGNQVY+PRIDDPSSRAFERCSTD+Y+L GPCTY +CYVYL
Sbjct: 61  SCSSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YR GY+GW VDKVTI SYSS RSVT+NY + IPNDVWFGFNFCSG+  +AV STAAM
Sbjct: 121 YRSGYDGWKVDKVTISSYSS-RSVTFNYNSKIPNDVWFGFNFCSGH--QAVESTAAM 172

[Close]

BLAST of Carg04234 vs. ExPASy TrEMBL
Match: A0A1S3BYY1 (uncharacterized protein LOC103494706 OS=Cucumis melo OX=3656 GN=LOC103494706 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.6e-73
Identity = 140/177 (79.10%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           ME+ KKATIS  FL  +F FSESSRSIL  P   PQPL+SFKINNTQNARSCSYTVTIKT
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPH--PQPLESFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SC SP YTRD ISIAFGDAYGNQVY+PRIDDPSSRAFERCSTD+Y+L GPCTY +CYVYL
Sbjct: 61  SCSSPAYTRDYISIAFGDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YR GY+GW VDKVTI SYSS RSVT+NY + IPNDVWFGFNFCSG+  +AV STAAM
Sbjct: 121 YRSGYDGWKVDKVTISSYSS-RSVTFNYNSKIPNDVWFGFNFCSGH--QAVESTAAM 172

[Close]

BLAST of Carg04234 vs. ExPASy TrEMBL
Match: A0A5D3E2M7 (Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001710 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.0e-72
Identity = 139/177 (78.53%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 1   MESFKKATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKT 60
           ME+ KKATIS  FL  +F FSESSRSIL  P   PQPL+SFKINNTQNARSCSYTVTIKT
Sbjct: 1   METLKKATISFCFLFAIFSFSESSRSILHQPH--PQPLESFKINNTQNARSCSYTVTIKT 60

Query: 61  SCGSPVYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYL 120
           SC SP YTRD ISIAF DAYGNQVY+PRIDDPSSRAFERCSTD+Y+L GPCTY +CYVYL
Sbjct: 61  SCSSPAYTRDYISIAFRDAYGNQVYVPRIDDPSSRAFERCSTDRYDLKGPCTYQVCYVYL 120

Query: 121 YRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAVGSTAAM 178
           YR GY+GW VDKVTI SYSS RSVT+NY + IPNDVWFGFNFCSG+  +AV STAAM
Sbjct: 121 YRSGYDGWKVDKVTISSYSS-RSVTFNYNSKIPNDVWFGFNFCSGH--QAVESTAAM 172

[Close]

BLAST of Carg04234 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-44
Identity = 81/166 (48.80%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 7   ATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQN-ARSCSYTVTIKTSCGSP 66
           A++ L+F L+ F F  S+          P   +SF ++  Q    +C+YTV I TSC S 
Sbjct: 2   ASVRLFFTLISFVFIISTSVYESKVLDPPHVAESFNVSLIQKLGNTCAYTVIISTSCSST 61

Query: 67  VYTRDQISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYLYRRGY 126
            YTRDQIS+AFGD YGNQ+Y PR+DDPS++ FE+CS+D +++NGPCTY ICYVYLYR G 
Sbjct: 62  RYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGP 121

Query: 127 NGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSGYHDEAV 172
           +GW+ + V IYS+ S ++VT+ Y   +P  VW+GFN+C+   D  V
Sbjct: 122 DGWIPNTVKIYSHGS-KAVTFPYNTYVPESVWYGFNYCNSASDSNV 166

[Close]

BLAST of Carg04234 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-42
Identity = 82/154 (53.25%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  FLLVLFGFSESSRSILPHPQSKPQPLQSF-KINNTQNARSCSYTVTIKTSCGSPVYTRDQ 72
           F L  F    S+RS +    +KP P+ SF      +NA +CSYTV IKTSC S  YTRD+
Sbjct: 11  FALCSFTLFSSARSFI---TTKPLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDK 70

Query: 73  ISIAFGDAYGNQVYIPRIDDPSSRAFERCSTDKYELNGPCTYPICYVYLYRRGYNGWVVD 132
           ISI+FGD YGN+VY+ R+DDPSSR FE+CS+D Y+++GPC   +CY+YL R+G +GW  +
Sbjct: 71  ISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPE 130

Query: 133 KVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCSG 166
            V IY  SS RSVT+ Y   +PN VW+GFN C+G
Sbjct: 131 NVKIYG-SSIRSVTFYYNLFLPNSVWYGFNVCNG 160

[Close]

BLAST of Carg04234 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-27
Identity = 62/161 (38.51%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 6   KATISLYFLLVLFGFSESSRSILPHPQSKPQPLQSFKINNTQNARSCSYTVTIKTSCGSP 65
           + ++S   LL++  F+       P P    +PL S    +     SC YTV + TSC SP
Sbjct: 2   ECSLSSILLLLVLCFTH------PIPSLTFEPLISSL--DLHEEESCPYTVIVTTSCFSP 61

Query: 66  VYTRDQISIAFGDAYGNQVYIPRIDDPSS--RAFERCSTDKYELNGPCTYPICYVYLYRR 125
            ++RDQ++IA GDA  NQV  PR+D P S    FE+CS+D +++ G C   IC VY+YR 
Sbjct: 62  DWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRS 121

Query: 126 GYNGWVVDKVTIYSYSSRRSVTYNYRAMIPNDVWFGFNFCS 165
           G +GW+ + V IY   S +SV +++   +P ++W+G N+C+
Sbjct: 122 GTDGWIPETVEIYKEGS-KSVKFDFNKNVPENIWYGNNYCN 153

[Close]

BLAST of Carg04234 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-21
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 51  SCSYTVTIKTSCGSPVYTRDQISIAFGDAYGNQVYIPRIDD--PSSRAFERCSTDKYELN 110
           +C YTV + TSC SP  TRDQISI FGDA GN+VY P++           +CST+ +++ 
Sbjct: 33  TCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQVR 92

Query: 111 GPC-TYPICYVYLYRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPN-DVWFGFNFCS 165
           G C   PIC +Y+ R G +GWV + + IYS  S +SV +++   +P  + W+G N C+
Sbjct: 93  GQCLNDPICSLYINRNGPDGWVPESIEIYSEGS-KSVKFDFSKSVPQLNTWYGHNNCN 149

[Close]

BLAST of Carg04234 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-21
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 51  SCSYTVTIKTSCGSPVYTRDQISIAFGDAYGNQVYIPRIDD--PSSRAFERCSTDKYELN 110
           +C YTV + TSC SP  TRDQISI FGDA GN+VY P++           +CST+ +++ 
Sbjct: 5   TCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTFQVR 64

Query: 111 GPC-TYPICYVYLYRRGYNGWVVDKVTIYSYSSRRSVTYNYRAMIPN-DVWFGFNFCS 165
           G C   PIC +Y+ R G +GWV + + IYS  S +SV +++   +P  + W+G N C+
Sbjct: 65  GQCLNDPICSLYINRNGPDGWVPESIEIYSEGS-KSVKFDFSKSVPQLNTWYGHNNCN 121

The following BLAST results are available for this feature:

BLAST of Carg04234 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036504.1	3.5e-99	100.00	Embryo-specific protein ATS3B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6606794.1	3.3e-97	98.31	Embryo-specific protein ATS3B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023525938.1	3.6e-96	98.31	embryo-specific protein ATS3B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022949508.1	1.2e-94	96.61	embryo-specific protein ATS3B-like [Cucurbita moschata]	[more]
XP_022998818.1	6.4e-93	94.92	embryo-specific protein ATS3B-like [Cucurbita maxima]	[more]

BLAST of Carg04234 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	1.7e-43	48.80	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q681K2	2.7e-41	53.25	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q9LYP6	5.8e-20	42.37	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of Carg04234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCA3	5.7e-95	96.61	embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111452835...	[more]
A0A6J1KHT8	3.1e-93	94.92	embryo-specific protein ATS3B-like OS=Cucurbita maxima OX=3661 GN=LOC111493367 P...	[more]
A0A5A7TNJ2	3.6e-73	79.10	Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BYY1	3.6e-73	79.10	uncharacterized protein LOC103494706 OS=Cucumis melo OX=3656 GN=LOC103494706 PE=...	[more]
A0A5D3E2M7	3.0e-72	78.53	Embryo-specific protein ATS3A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Carg04234 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	1.2e-44	48.80	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	1.9e-42	53.25	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	6.5e-27	38.51	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	4.1e-21	42.37	seed gene 3	[more]
AT5G07190.2	4.1e-21	42.37	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 46..163 e-value: 1.0E-46 score: 157.9
None	No IPR available	GENE3D	2.40.180.10	Catalase core domain	coord: 23..159 e-value: 1.4E-7 score: 32.5
None	No IPR available	PANTHER	PTHR31718:SF46	EMBRYO-SPECIFIC PROTEIN ATS3A	coord: 9..165
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 9..165
None	No IPR available	CDD	cd00113	PLAT	coord: 52..163 e-value: 1.53729E-26 score: 95.4836
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 51..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04234-RA	Carg04234-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding