Carg04227 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04227
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHPt domain-containing protein
LocationCarg_Chr01: 650082 .. 651509 (-)
RNA-Seq ExpressionCarg04227
SyntenyCarg04227
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAGTAAATTTCATAAACTCTCTCTCTTTTATTTTTCACTTTTTCATTTGGTGCCTTTACAATGCGATTGTTCTTCAATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCCATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCCATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCAATAAGGGTTCAAGGGTTTTGCTTCAATTACTCAAAAAAATGAAATTCATTTTTTTGTGTAATAATGATTTTTCTAACAAGGGTTTAATGTGTTTCTTCAAATTTTAGAACCATATTAAATGTTTTGCTTGAATCACGCTTGAAATGGGGAGAAAATGATGTTGGAATTGTTAGATTCTGTCCACTTTTAGGTAAGCTCTTATGACTTTGCTTTTAGTCTCTTCAAAAGACCTCATAGCAATAAAGACAGTATTAGTTGATTATAAACTCATGATCATTCAACACGAATGAATTTGAAAATTCTTGCTCGTATTAACTTTTTTCATCACTAAATTCAATTTTTGTAATGCAGGGAGTATTAGACGAACAATTCTTGCAGCTACAACAGCTTCAAGATGAAAGCTCTCCAAATTTCGTATCGGAAGTAGTGAACATTTACTTTCAAGAATCGGAGCGGCTGTTGAAAAACCTAAGAGCGTTGTTGTAAGTCTTTGTTTTGTAGTTCTCATGCACAGACACACAAAGAATAAGAATAAGGAAAGGTTGTTGATGGGGGTTAGGGTTTTTGTTTGGATTGGACAGAATTGAGAGAGAGCTGACTGATTACAAGAAGATGGGAAACCATTTGAATCAGCTGATGGGGAGCAGCTCAAGCATTGGAGCTAACAGAGTCAGAAATGTTTGCATTGCATTTCGAGCCAATTCTGAACAAAGCAACCGTGCTGGGTAATTATTTAATCAAAACCCCCCCATTTTTATCCTTTTTATCTTCTTATTTATCATCACTCAAAAAAAACACATAATCTGGGTTACCCTTTTTGAGATTTTCAAAGTGGAATACATCTTCATTGTTACGAGGCCTTTTGGAGAAACGTACTCATGTTCAAAATGGACAATTGGCAGGTGTTTGAGAGCATTGGAAGTACTTGAACACGAGTATTGTTATTTAAAGAGCAAACTTCACGAGCTGTTTCAGGTGAGTTGAAGATAGGGAAAGACGAAAGTTGTTGTATAAAAATTGTTACACAAAAAAGGCAGCTTTTTTTTTATTTAGCTTTTGCAATTTGCATGTGATGCAGATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

mRNA sequence

GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

Coding sequence (CDS)

GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

Protein sequence

AKTGLPLWMLGFSADRLRADMNRLLALLFHQIEQQRALGAGVRYPMQQN
Homology
[Close]
BLAST of Carg04227 vs. NCBI nr
Match: KAG7036511.1 (hypothetical protein SDJN02_00129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQIEQQRALGAGVRYPMQQN 50
          AKTGLPLWMLGFSADRLRADMNRLLALLFHQIEQQRALGAGVRYPMQQN
Sbjct: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQIEQQRALGAGVRYPMQQN 49

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: RVW32177.1 (histidine-containing phosphotransfer protein 6 [Vitis vinifera] >RVW84399.1 histidine-containing phosphotransfer protein 6 [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLG  ADRLRADMNRLLALLFHQ
Sbjct: 45 AKTGLPLWMLGLGADRLRADMNRLLALLFHQ 75

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: XP_008454224.1 (PREDICTED: pseudo histidine-containing phosphotransfer protein 6 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTG+P+WMLGF ADRLRADMNRLLALLFHQ
Sbjct: 22 AKTGVPVWMLGFRADRLRADMNRLLALLFHQ 52

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: CAA3007449.1 (pseudo histidine-containing phosphotransfer 6-like [Olea europaea subsp. europaea])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 2  KTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          KTGLPLWMLGF A+RLRADMNRLLALLFHQ
Sbjct: 31 KTGLPLWMLGFGAERLRADMNRLLALLFHQ 60

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: BBG99096.1 (histidine phosphotransfer protein 6 [Prunus dulcis])

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRADMNRLLA+LFHQ
Sbjct: 41 AKTGLPVWMLGLGADRLRADMNRLLAMLFHQ 71

[Close]
BLAST of Carg04227 vs. ExPASy TrEMBL
Match: A0A438HJ41 (Histidine-containing phosphotransfer protein 6 OS=Vitis vinifera OX=29760 GN=AHP6_0 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLG  ADRLRADMNRLLALLFHQ
Sbjct: 45 AKTGLPLWMLGLGADRLRADMNRLLALLFHQ 75

[Close]
BLAST of Carg04227 vs. ExPASy TrEMBL
Match: A0A1S3BY84 (pseudo histidine-containing phosphotransfer protein 6 OS=Cucumis melo OX=3656 GN=LOC103494696 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTG+P+WMLGF ADRLRADMNRLLALLFHQ
Sbjct: 22 AKTGVPVWMLGFRADRLRADMNRLLALLFHQ 52

[Close]
BLAST of Carg04227 vs. ExPASy TrEMBL
Match: A0A6J5WUN5 (HPt domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS19659 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRADMNRLLA+LFHQ
Sbjct: 66 AKTGLPVWMLGLGADRLRADMNRLLAMLFHQ 96

[Close]
BLAST of Carg04227 vs. ExPASy TrEMBL
Match: A0A4Y1R519 (Histidine phosphotransfer protein 6 OS=Prunus dulcis OX=3755 GN=Prudu_008680 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRADMNRLLA+LFHQ
Sbjct: 41 AKTGLPVWMLGLGADRLRADMNRLLAMLFHQ 71

[Close]
BLAST of Carg04227 vs. ExPASy TrEMBL
Match: A0A5E4GHD3 (PREDICTED: histidine-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B028137 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRADMNRLLA+LFHQ
Sbjct: 61 AKTGLPVWMLGLGADRLRADMNRLLAMLFHQ 91

The following BLAST results are available for this feature:
BLAST of Carg04227 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036511.12.5e-18100.00hypothetical protein SDJN02_00129, partial [Cucurbita argyrosperma subsp. argyro... [more]
RVW32177.11.3e-0693.55histidine-containing phosphotransfer protein 6 [Vitis vinifera] >RVW84399.1 hist... [more]
XP_008454224.11.6e-0690.32PREDICTED: pseudo histidine-containing phosphotransfer protein 6 [Cucumis melo][more]
CAA3007449.12.2e-0693.33pseudo histidine-containing phosphotransfer 6-like [Olea europaea subsp. europae... [more]
BBG99096.14.8e-0687.10histidine phosphotransfer protein 6 [Prunus dulcis][more]
BLAST of Carg04227 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04227 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438HJ416.1e-0793.55Histidine-containing phosphotransfer protein 6 OS=Vitis vinifera OX=29760 GN=AHP... [more]
A0A1S3BY848.0e-0790.32pseudo histidine-containing phosphotransfer protein 6 OS=Cucumis melo OX=3656 GN... [more]
A0A6J5WUN52.3e-0687.10HPt domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS19659 ... [more]
A0A4Y1R5192.3e-0687.10Histidine phosphotransfer protein 6 OS=Prunus dulcis OX=3755 GN=Prudu_008680 PE=... [more]
A0A5E4GHD32.3e-0687.10PREDICTED: histidine-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B028137 PE=4... [more]
BLAST of Carg04227 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04227-RACarg04227-RAmRNA