Carg04188 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04188
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 886510 .. 888788 (-)
RNA-Seq ExpressionCarg04188
SyntenyCarg04188
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCACATTTTCTTCATTTCAGGTGATTGATCTCTCGAATCTCTCTGTAGAAAAGAATCCACTACCTTTTCTACTCTGCTGTAGTAATGACTCTTCACCCACTTATGTAGATTCAGCCCTTCAACGAACATGTCGTCTATTGGTCTTTTTCTTGTCACCATTTCCAAAACTAGAACTCCAAAGCTGTAAACGTCTCCTTCCATGGATGCTGATGAACCAAATCCGTATTCTGCGTCGAGCATAGAGGTAACATGAATAATGCACTTCACGTGTTTGATAAAAGTCCTAAACGAAAAATGGGAAAATGGAATATTGTTGTTTTGATATCTCTCTTTCTTTCACATTTTAAATCGTTGTGAATACATTCAATGATCAAATTTGTCATAGTTTCATAGCTTATCAACCTCAAACTTTTAGGCCTAGGAGAGGATCTTAAACTAGAACTCTGGGGATGATTATGGAGATGGAGAAGCAGTAGCTTTTCTCGACTCTGCTAACTTACTTGACCCTCTTGATTATAATGAGCTTGGAATGTAGATGAACTGAAAATGAAAATTTTTCGGTTTTTAGAGAATTATACCTGGTGCTATATATCCAATTGATCCAGTTAGAATGCTTGCAGTTGACTTTCCCATGTTTTCAGCAGCTGCCCCACTTCCAATTCCAGGAGTCATCAGCCTCGAGATTCCGAAGTCAGAAACTAGAGCTGTCATGTCGTCTTTTAGAAGAACATTGCTCGGCTTTAGATCGCAGTGTATGACTCTGACTGGAGAGTGGTGGTGAAGGTATGCCATTCCTTCAGCTATATCACTGCATATATTTACCCTCTGGATGAGGCTTAAATCTGAAGAACCATAAGCCAAGCTGGCTGGTGAATGTTGATATAGGTGCCTATCTAAGCTTCCATTTGCCATGTAGGGTAGAACTAGGGCTTTAAAATCTGGTAGACTACAAGCTGTTATTATTCTTATAAGGTTTCTGTGGCGAATTCGCTTCAAAACTTCACATTCTCTGTTAAAGCTCTTTGTGGAATTTCCAGATTGCGTATGTAAAACCTTAACAGCTACTGTTGTTCTATCTGGAAGAACACCTCGGTAGACTCGTCCATAGCTGCCTGAACCGATTAGTCTCTGTTCATCAAAACCTCCTGTGGCTTCTGATAGTTGCCTGCTTGTTATTCTTGGAAAATTGTGTGTAAAATCTGGCATCTTGGATCTCCTTGACGACTCACTATTTCGTATCGAAATAATTGCTTTTAGACGTAGACAAGCAATCCCACAGCATAGTGTTGTTAAGAATGATGATATGCATATGATTAAGATGAATATAGTCAAGAATAGAGGTGACTGAAACCGATTTCTCTCGCCAAAACAGGTTCGTATTCCAGGAATTGTTCCACAAAGTAGTGGATTGTTCATAAATGACAAGGGTGTAGATGATTTGAAAAAACCCTCTCTTGGAATCATTCCTTCGAAGTTATTGAATGAAAGATTCAGATAGGTGAGGGATTGGAGCTTACCAAGACTGGCTGGAATCATGCCTGACATTTTGTTTTTTGAAATATCAAATGATTCAAGGTTCTCAAGTTCACCTAGGGAATCTGGAAGGTGACCTTGGAGGGAATTCATTGAAAAATTTATAAACCTCAGTGCAATACAACTTGATATCTGAGGGAAGATGCTTCCGGTGAGGTTATTGGACGAAAAGTCGATCTCTTGAACGTTTTTCAGCTTGCTAAGCTCAATGGGCAAAATTCCTTGAAGATTGTTATGAGAAAGGTTAATAAAAATTCTTATCTCTTGCAAGCCTATTATCTCTTGAGGAATGCTTCCTGACAACATGTTGAAGGATAAGTCCAGCTTATAAAGACCTGTGCACTTTCCCAATGCTGAAGGTATTGTTCCTGACAAGAAGTTGTTGTTGAGAAACAAATAGTTCATCTGAGACAAGTTTCCAATACTTTCTGGGATTTCACCTGAAAGTTGGTTGTGAGATAGATCCAACAAACCAAGATGTTCTAACTCGCCTAATGCTTCTGGAATGCCTGAAGTAAAGAGGTTATGTGATAAGAACAGCTGCTCCAATTTAGACAACTTGCTTATGTCTGCTGGAATTGTTCCATTAAGTAGATTTGATGTCAAATTCAGCCCTGCAAGTTTGGAAAGCTGCGCCAAACTTGGAGGGATTGATCCAAATATTTGGTTTTCCTGCAAAGACAAAACTGAAAAATTGA

mRNA sequence

TTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCACATTTTCTTCATTTCAGATTCAGCCCTTCAACGAACATGTCGTCTATTGGTCTTTTTCTTGTCACCATTTCCAAAACTAGAACTCCAAAGCTGTAAACGTCTCCTTCCATGGATGCTGATGAACCAAATCCGTATTCTGCGTCGAGCATAGAGCAGCTGCCCCACTTCCAATTCCAGGAGTCATCAGCCTCGAGATTCCGAAGTCAGAAACTAGAGCTGTCATGTCGTCTTTTAGAAGAACATTGCTCGGCTTTAGATCGCAGTGTTTCTGTGGCGAATTCGCTTCAAAACTTCACATTCTCTGTTAAAGCTCTTTGTGGAATTTCCAGATTGCGTATACGTAGACAAGCAATCCCACAGCATAGTGTTGTTAAGAATGATGATATGCATATGATTAAGATGAATATAGTCAAGAATAGAGCCCTGCAAGTTTGGAAAGCTGCGCCAAACTTGGAGGGATTGATCCAAATATTTGGTTTTCCTGCAAAGACAAAACTGAAAAATTGA

Coding sequence (CDS)

ATGGATGCTGATGAACCAAATCCGTATTCTGCGTCGAGCATAGAGCAGCTGCCCCACTTCCAATTCCAGGAGTCATCAGCCTCGAGATTCCGAAGTCAGAAACTAGAGCTGTCATGTCGTCTTTTAGAAGAACATTGCTCGGCTTTAGATCGCAGTGTTTCTGTGGCGAATTCGCTTCAAAACTTCACATTCTCTGTTAAAGCTCTTTGTGGAATTTCCAGATTGCGTATACGTAGACAAGCAATCCCACAGCATAGTGTTGTTAAGAATGATGATATGCATATGATTAAGATGAATATAGTCAAGAATAGAGCCCTGCAAGTTTGGAAAGCTGCGCCAAACTTGGAGGGATTGATCCAAATATTTGGTTTTCCTGCAAAGACAAAACTGAAAAATTGA

Protein sequence

MDADEPNPYSASSIEQLPHFQFQESSASRFRSQKLELSCRLLEEHCSALDRSVSVANSLQNFTFSVKALCGISRLRIRRQAIPQHSVVKNDDMHMIKMNIVKNRALQVWKAAPNLEGLIQIFGFPAKTKLKN
Homology
[Close]
BLAST of Carg04188 vs. NCBI nr
Match: KAG7036550.1 (hypothetical protein SDJN02_00169 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MDADEPNPYSASSIEQLPHFQFQESSASRFRSQKLELSCRLLEEHCSALDRSVSVANSLQ 60
           MDADEPNPYSASSIEQLPHFQFQESSASRFRSQKLELSCRLLEEHCSALDRSVSVANSLQ
Sbjct: 1   MDADEPNPYSASSIEQLPHFQFQESSASRFRSQKLELSCRLLEEHCSALDRSVSVANSLQ 60

Query: 61  NFTFSVKALCGISRLRIRRQAIPQHSVVKNDDMHMIKMNIVKNRALQVWKAAPNLEGLIQ 120
           NFTFSVKALCGISRLRIRRQAIPQHSVVKNDDMHMIKMNIVKNRALQVWKAAPNLEGLIQ
Sbjct: 61  NFTFSVKALCGISRLRIRRQAIPQHSVVKNDDMHMIKMNIVKNRALQVWKAAPNLEGLIQ 120

Query: 121 IFGFPAKTKLKN 133
           IFGFPAKTKLKN
Sbjct: 121 IFGFPAKTKLKN 132

The following BLAST results are available for this feature:
BLAST of Carg04188 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036550.13.8e-66100.00hypothetical protein SDJN02_00169 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg04188 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04188 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04188 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04188-RACarg04188-RAmRNA