Carg04173 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04173
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
LocationCarg_Chr19: 8037151 .. 8039440 (-)
RNA-Seq ExpressionCarg04173
SyntenyCarg04173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTAACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTTCGCATTGCTGCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGTAAATTCCTCACAAGCATTCGATTTCGACGAAACGTGCTCGATGTAAATTAATTATGAAAACTCTGTGAGTTGAGTTATGATGCGTAGACAAATATGCTGAGTTGTTCCATATGTTGTGATGTTTTTCTTTTTCTCTTTTTCTATTTAGGCTTCCAGTTGAAATTAGCTGCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGTCTCTTCTAATTCTTCTAGTAGTTTCTATGGATGGGACTAAGTTATGAGCCAAGAGTTGTTGCCTCCCTGTTCTGCATCTACACTAGAGTGAATTTTACTTTTTCCAATGTTCTCGTTGTACTGCCACTATTAAGGTTTCTGATTTCTGTTGGCCTAAAAACTGAATTGCGACCTCAGCTTCATTGGTTATTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTCTACTCAATTGATCCTATATATTTGGCCCTTAGAATACAGGAGGAAAAGGAGGAGGATGAAATAGTGACTGAAATCTCGTTTTCTTTGACAAGAAGACAGAAATTTTCATTGATATGATATTTGATGAAAAGTTGCAAGAAACCAAACTCTATATAACAAGCCTAACAGGGAGGGTAATTATAAGGGAAGAACAAAGAGGTTAGGATTTATAATTCGTTCCATCACGATTTGAACTGTTTGAAATAAGAAATAGACAATAATTCTCCAAATAGTCTCAAACTAGTTCAAACCAATACCAGTGTTTTGGGTCAAATATATTTCCCTACTGCTTTTATAATCTCAAATGCTCTTTCAGCTTGGTAGAGCAATGTCTTATCTGGCCCCTTCTTTCTCACTACTTTTTTTCGGATCAATGAATTGAGAATTCAGTCCATCGTCCAAAGATAGAGATTAAATGCTGTATTCTGGATTAGGGTCTTCTAACTTCTTCAAAGCTAAAAAATACAGTTCGTTGTTTGTAACGAATCATTTCCCTCCTGCTGTGACGTATGATTTAGCTGTTTGTATGTGATGCTTGTATGTTATTCAAGCACAACGATTTCATCCACGTACTTGATATTAAATGTGAGGATACTAATTATAACGTTTAACCAGTGTTCAATGATGATGTGTGATGATGAATTGTCAAAGAGGCAGAAAGTCTTGTTTGCAGAGTTCTACATTGTGACAGTGCCCGCTGCTAAAATACTCGTGCTGATCTGCAGGAATTTGGTTTTCCATGGCTCGAATCTCGGTCTAGCAAGCATGTCTTAGATTCTAAATTTGTGCAACTACGGACTACTAGAATGTATAGGAAGAGATACACATTAGACAGGAAGGCTTCAATAAATTGTCTCGTTATGTTTTAACTCCTTAAAGGATTGTCTTGCAATTATGAAATAGAAAATCTTACCAAGATAAGAGGAAGGATTCTTCGGCTAGCAGTCTTTATATATCTATTATATTACTCTATCATGGATGCTTATCAAACTTCATGACCTCTATTAATAGATGTATCGCACAATGTTAACGCCATTTAATATCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATAGACGTTGATTGGAAAAGGTTTCACCTTCTTGGGCAACATGGTCACCCAAGTAAATCTTCGATTGCAACCAGGGTTTGTGTTTGGCAAGGCAATCTCATCTTTTAAATTTAGTTTTCTCAGCTTAATCTTGATATTCAACTGAAAGACCCAAATAACAACCTTTTTCTTATGATATATTTTATTTAGGTTCAGATATGATTTTGGTCTTTGTATCTTTCGTTTCATTAGAAACTAATACCAAGAACTATGTGCAATTTACCCATTATGATGAGTCGAGCAAATCTGCTAGAGCACATTGATATAGTACACCCATGAATGCAAGGGTTATAATGTACGTTTGAGTAAGCCTTTTGTGAGGCAACTGACTGAAAGTTAGCTGTGGATAGCACAATAGTTAGACAAATGAGGCAACA

mRNA sequence

GAAGCAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTAACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTTCGCATTGCTGCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATTAGCTGCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGTGACTGGCTTGCAAACTTCATGATAGACGTTGATTGGAAAAGGTTTCACCTTCTTGGGCAACATGGTCACCCAAGTAAATCTTCGATTGCAACCAGGGTTTGTGTTTGGCAAGGCAATCTCATCTTTTAAATTTAGTTTTCTCAGCTTAATCTTGATATTCAACTGAAAGACCCAAATAACAACCTTTTTCTTATGATATATTTTATTTAGGTTCAGATATGATTTTGGTCTTTGTATCTTTCGTTTCATTAGAAACTAATACCAAGAACTATGTGCAATTTACCCATTATGATGAGTCGAGCAAATCTGCTAGAGCACATTGATATAGTACACCCATGAATGCAAGGGTTATAATGTACGTTTGAGTAAGCCTTTTGTGAGGCAACTGACTGAAAGTTAGCTGTGGATAGCACAATAGTTAGACAAATGAGGCAACA

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTTCGCATTGCTGCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATTAGCTGCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGTGACTGGCTTGCAAACTTCATGA

Protein sequence

MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Homology
[Close]
BLAST of Carg04173 vs. NCBI nr
Match: KAG6572259.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011888.1 Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.9 bits (442), Expect = 3.4e-40
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Carg04173 vs. NCBI nr
Match: XP_022952574.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 7.5e-40
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVE+SCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Carg04173 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVE+S CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Carg04173 vs. NCBI nr
Match: XP_022952575.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVE+SCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALMTSMLSVSRHSYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 89

[Close]
BLAST of Carg04173 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVE+S CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Carg04173 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-10
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARAISRSSFGKAATLLSVGSRAAPARSS---FRIAAKRPFSQCAVRLPVEISCCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S+   FR  A+R      +R PVE+S CVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Carg04173 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.6e-40
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVE+SCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Carg04173 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVE+S CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Carg04173 vs. ExPASy TrEMBL
Match: A0A6J1GM60 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVE+SCCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALMTSMLSVSRHSYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 89

[Close]
BLAST of Carg04173 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAISRSSFG+AATLLSVGSRAAPARSSFRIA+KRPFSQCAVRLPVE+S CVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALMTSMLSVSRHSYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 89

[Close]
BLAST of Carg04173 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.0e-31
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESM 60
          MASFAARAI RSS GK ATLLS G+RAAPARS FRIA+KRPFS  + R+P+E+S CVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 96
          LPFHSATSSALMTSMLSVS HSYGWLSEV+GLQTS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQTS 95

[Close]
BLAST of Carg04173 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 5  AARAISRSSFGKA--ATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESMLP 64
          AAR++ RS  G+A  A L S     + ARSSF++  + P S    R PVE+SCCVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]
BLAST of Carg04173 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 5  AARAISRSSFGKA--ATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEISCCVESMLP 64
          AAR++ RS  G+A  A L S     + ARSSF++  + P S    R PVE+SCCVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]
BLAST of Carg04173 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0 

Query: 5  AARAISRSSFGKAATL---LSVGSRAAP--ARSSFRIAAKRPFSQCAVRLPVEISCCVES 64
          AAR++ RS+  +A++     S G +  P  AR++FR+  + P +    R PVE+SCCVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 87
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Carg04173 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0 

Query: 5  AARAISRSSFGKAATL---LSVGSRAAP--ARSSFRIAAKRPFSQCAVRLPVEISCCVES 64
          AAR++ RS+  +A++     S G +  P  AR++FR+  + P +    R PVE+SCCVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 87
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Carg04173 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0 

Query: 5  AARAISRSSFGKAATL---LSVGSRAAP--ARSSFRIAAKRPFSQCAVRLPVEISCCVES 64
          AAR++ RS+  +A++     S G +  P  AR++FR+  + P +    R PVE+SCCVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 87
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:
BLAST of Carg04173 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572259.13.4e-40100.00Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb... [more]
XP_022952574.17.5e-4098.95protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022969309.17.1e-3895.79protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022952575.11.3e-3698.88protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_023554650.11.3e-3693.68protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of Carg04173 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ32.2e-1048.84Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Carg04173 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GM363.6e-4098.95protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1I2783.4e-3895.79protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1GM606.4e-3798.88protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1HZK66.0e-3595.51protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A1S3CB409.0e-3182.11protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of Carg04173 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33847.11.9e-1252.50unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G33847.21.9e-1252.50unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT1G28395.27.1e-1247.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.17.1e-1247.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.37.1e-1247.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..88
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04173-RACarg04173-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy
cellular_component GO:0016021 integral component of membrane