Carg04170 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04170
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Calcium-binding EF-hand family protein
Location	Carg_Chr19: 8026134 .. 8026550 (+)
RNA-Seq Expression	Carg04170
Synteny	Carg04170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAGAAATCTTGGACAGTGCTACGATCGTGAGCTTCGTGGAAGACGAAGAGGCATTCAGAGCGACAATTACAGAGCATTTCAGGGAGCTTGACATGGACAGAGATGGGGTTCTTTCTTACGGAGAGATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCATCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTTTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

mRNA sequence

ATGAGCGTAGAAATCTTGGACAGTGCTACGATCGTGAGCTTCGTGGAAGACGAAGAGGCATTCAGAGCGACAATTACAGAGCATTTCAGGGAGCTTGACATGGACAGAGATGGGGTTCTTTCTTACGGAGAGATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCATCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTTTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

Coding sequence (CDS)

ATGAGCGTAGAAATCTTGGACAGTGCTACGATCGTGAGCTTCGTGGAAGACGAAGAGGCATTCAGAGCGACAATTACAGAGCATTTCAGGGAGCTTGACATGGACAGAGATGGGGTTCTTTCTTACGGAGAGATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCATCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTTTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

Protein sequence

MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEENSFLKKAVDRESTKLAVA

Homology

[Close]

BLAST of Carg04170 vs. NCBI nr
Match: XP_022952569.1 (uncharacterized protein LOC111455222 [Cucurbita moschata] >KAG6572254.1 hypothetical protein SDJN03_28982, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011885.1 hypothetical protein SDJN02_26792, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 4.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG
Sbjct: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE
Sbjct: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLAVA
Sbjct: 121 NSFLKKAVDRESTKLAVA 138

[Close]

BLAST of Carg04170 vs. NCBI nr
Match: XP_023554639.1 (uncharacterized protein LOC111811829 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG
Sbjct: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE
Sbjct: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NS LKKAVDRESTKLAVA
Sbjct: 121 NSLLKKAVDRESTKLAVA 138

[Close]

BLAST of Carg04170 vs. NCBI nr
Match: XP_022969296.1 (uncharacterized protein LOC111468345 [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 4.0e-66
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIVSFVEDEEAFRATITEHFRELD+DRDGVLSYGEML+ELQSLRVLETHFG
Sbjct: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDVDRDGVLSYGEMLRELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           VDVKPDPEELSSVYASLFSQFDRDCNGK+DLGEFMAETRKMML MANGIGLSPVRMVLEE
Sbjct: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKIDLGEFMAETRKMMLGMANGIGLSPVRMVLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKL VA
Sbjct: 121 NSFLKKAVDRESTKLPVA 138

[Close]

BLAST of Carg04170 vs. NCBI nr
Match: XP_038888629.1 (uncharacterized protein LOC120078427 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-58
Identity = 119/138 (86.23%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIV+FVEDEEAF  +I E F  LD+DRDGVL YGEMLKELQSLRVLETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSDSIRERFSHLDLDRDGVLCYGEMLKELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           +D KPDP+ELSSVY SLFSQFDRDCNGKVDLGEFMAET+KMMLAMANGIG SPV+M+LEE
Sbjct: 61  IDTKPDPDELSSVYGSLFSQFDRDCNGKVDLGEFMAETKKMMLAMANGIGFSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLA A
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Carg04170 vs. NCBI nr
Match: XP_008455503.1 (PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo] >KAA0059111.1 Calcium-binding EF-hand family protein [Cucumis melo var. makuwa] >TYK21616.1 Calcium-binding EF-hand family protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-58
Identity = 120/138 (86.96%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIV+FVEDEEAF   I E F  LDMDRDGVL YGEMLKELQSLRV ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRVFETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           +D KPDP ELSSVYASLF QFDRDCNGKVDLGEFMAET+KMMLAMANGIGLSPV+M+LEE
Sbjct: 61  IDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLA A
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Carg04170 vs. ExPASy TrEMBL
Match: A0A6J1GM29 (uncharacterized protein LOC111455222 OS=Cucurbita moschata OX=3662 GN=LOC111455222 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG
Sbjct: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE
Sbjct: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLAVA
Sbjct: 121 NSFLKKAVDRESTKLAVA 138

[Close]

BLAST of Carg04170 vs. ExPASy TrEMBL
Match: A0A6J1HXE4 (uncharacterized protein LOC111468345 OS=Cucurbita maxima OX=3661 GN=LOC111468345 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIVSFVEDEEAFRATITEHFRELD+DRDGVLSYGEML+ELQSLRVLETHFG
Sbjct: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDVDRDGVLSYGEMLRELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           VDVKPDPEELSSVYASLFSQFDRDCNGK+DLGEFMAETRKMML MANGIGLSPVRMVLEE
Sbjct: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKIDLGEFMAETRKMMLGMANGIGLSPVRMVLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKL VA
Sbjct: 121 NSFLKKAVDRESTKLPVA 138

[Close]

BLAST of Carg04170 vs. ExPASy TrEMBL
Match: A0A5D3DDG8 (Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00140 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 120/138 (86.96%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIV+FVEDEEAF   I E F  LDMDRDGVL YGEMLKELQSLRV ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRVFETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           +D KPDP ELSSVYASLF QFDRDCNGKVDLGEFMAET+KMMLAMANGIGLSPV+M+LEE
Sbjct: 61  IDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLA A
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Carg04170 vs. ExPASy TrEMBL
Match: A0A1S3C1T0 (uncharacterized protein LOC103495655 OS=Cucumis melo OX=3656 GN=LOC103495655 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 120/138 (86.96%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEILDSATIV+FVEDEEAF   I E F  LDMDRDGVL YGEMLKELQSLRV ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRVFETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           +D KPDP ELSSVYASLF QFDRDCNGKVDLGEFMAET+KMMLAMANGIGLSPV+M+LEE
Sbjct: 61  IDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLA A
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Carg04170 vs. ExPASy TrEMBL
Match: A0A0A0K1Y0 (Calcium ion binding protein OS=Cucumis sativus OX=3659 GN=Csa_7G037620 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 116/138 (84.06%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           MSVEIL+SATI++FVEDEEAF   I E F  LD+DRDGVL YGEMLKELQSLRVLETHFG
Sbjct: 1   MSVEILNSATIMNFVEDEEAFSGWIRERFSHLDIDRDGVLCYGEMLKELQSLRVLETHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEE 120
           +D KPDP ELSSVY SLF QFDRDCNGKVDLGEFM ET+KMMLAMANGIGLSPV+M+LEE
Sbjct: 61  IDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 NSFLKKAVDRESTKLAVA 139
           NSFLKKAVDRESTKLA A
Sbjct: 121 NSFLKKAVDRESTKLAAA 138

[Close]

BLAST of Carg04170 vs. TAIR 10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 137.5 bits (345), Expect = 8.1e-33
Identity = 67/140 (47.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 1   MSVEILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFG 60
           M V ++D +T+ SFV+DEE F+ ++ E F  LD+++DGVLS  E+ K  +S+R+LE+HFG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  VDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVL-- 120
           VDV    +EL+++Y S+F +FD D +G VDL EF +E +K++LA+A+G+G  P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EENSFLKKAVDRESTKLAVA 139
           ++++FLKKA D E++KL  A
Sbjct: 121 DDDNFLKKAADLEASKLEKA 140

[Close]

BLAST of Carg04170 vs. TAIR 10
Match: AT1G54530.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-12
Identity = 42/128 (32.81%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 5   ILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFGVDVK 64
           ++ S T++ F+ D ++F +   ++F+ LD+D++G+LS  E+ + L ++  +E+    +V 
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 64

Query: 65  PDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEENSFL 124
           P  +E  +VY ++F +F  D   K +  + +AE   ++ AMA GIG SPV MV+  +  +
Sbjct: 65  PG-DETDNVYNAIFERFGEDLVPK-NFRDLIAE---ILTAMARGIGNSPVIMVVHNDGLI 123

Query: 125 KKAVDRES 133
            KAV  ES
Sbjct: 125 MKAVLHES 123

[Close]

BLAST of Carg04170 vs. TAIR 10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 31/125 (24.80%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 4   EILDSATIVSFVEDEEAFRATITEHFRELDMDRDGVLSYGEMLKELQSLRVLETHFGVDV 63
           ++LD + IV  VE+E+ F   + + F++LD D DG LS  E+   +  +       G+  
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAA---LGLPA 72

Query: 64  KPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEENSF 123
           +    +   +Y+ + ++F      KV   EF      ++L MA G+   P+ ++  +   
Sbjct: 73  QGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGED 132

Query: 124 LKKAV 129
           L + V
Sbjct: 133 LSEFV 134

The following BLAST results are available for this feature:

BLAST of Carg04170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952569.1	4.3e-68	100.00	uncharacterized protein LOC111455222 [Cucurbita moschata] >KAG6572254.1 hypothet...	[more]
XP_023554639.1	2.1e-67	99.28	uncharacterized protein LOC111811829 [Cucurbita pepo subsp. pepo]	[more]
XP_022969296.1	4.0e-66	96.38	uncharacterized protein LOC111468345 [Cucurbita maxima]	[more]
XP_038888629.1	1.4e-58	86.23	uncharacterized protein LOC120078427 [Benincasa hispida]	[more]
XP_008455503.1	2.3e-58	86.96	PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo] >KAA0059111.1 Cal...	[more]

BLAST of Carg04170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GM29	2.1e-68	100.00	uncharacterized protein LOC111455222 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1HXE4	1.9e-66	96.38	uncharacterized protein LOC111468345 OS=Cucurbita maxima OX=3661 GN=LOC111468345...	[more]
A0A5D3DDG8	1.1e-58	86.96	Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C1T0	1.1e-58	86.96	uncharacterized protein LOC103495655 OS=Cucumis melo OX=3656 GN=LOC103495655 PE=...	[more]
A0A0A0K1Y0	1.1e-56	84.06	Calcium ion binding protein OS=Cucumis sativus OX=3659 GN=Csa_7G037620 PE=4 SV=1	[more]

BLAST of Carg04170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44310.1	8.1e-33	47.86	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	6.0e-12	32.81	Calcium-binding EF hand family protein	[more]
AT4G38810.2	2.6e-07	24.80	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 e-value: 0.55 score: 19.3 coord: 73..101 e-value: 3.0 score: 13.9
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 24..97 e-value: 3.9E-10 score: 40.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 9.464338
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 9.018011
None	No IPR available	GENE3D	1.10.238.10		coord: 4..111 e-value: 2.3E-11 score: 45.4
None	No IPR available	PANTHER	PTHR34574:SF10	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-LIKE	coord: 1..134
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..134
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 22..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04170-RA	Carg04170-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding