Carg04133 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04133
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type domain-containing protein
Location	Carg_Chr19: 7829713 .. 7830177 (+)
RNA-Seq Expression	Carg04133
Synteny	Carg04133

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTGTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

mRNA sequence

ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTGTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

Coding sequence (CDS)

ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTGTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSSELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW

Homology

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BLAST of Carg04133 vs. NCBI nr
Match: KAG6572211.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011849.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. NCBI nr
Match: XP_023554631.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHI+GIRFSSPSSLVPSTDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. NCBI nr
Match: XP_022969282.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRYP+IRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. NCBI nr
Match: XP_022952716.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952718.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 5.2e-83
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLNAILINAALSISIF+CIVRLILHI+GIRFSSPSSLVPSTDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. NCBI nr
Match: XP_038887530.1 (probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+FKCIVRLILH++GIR S PSSLV STDSFE+SS
Sbjct: 66  MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMIGIRLSWPSSLVSSTDSFESSS 125

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRY SIRFDK+QGSER EHDCSVCLTQFEPESEIN LSCGHL
Sbjct: 126 ELGDSNFGSSWSYLEMFRNRYLSIRFDKIQGSERREHDCSVCLTQFEPESEINILSCGHL 185

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 186 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 219

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BLAST of Carg04133 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 91/150 (60.67%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L IVGI   SPSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISL-SPSSSSPSSVTVSSEN 60

Query: 61  S--SELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           S  SE  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Carg04133 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 76  MFRNRYPSIRFDKVQGS-ERLEHDCSVCLTQFEPESEINHL-SCGHLFHTECLEKWLDYW 135
           + R   P I+F+++  S E L  +C+VCL +FE E EI  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEEEKSCF 154
             TCPLCRTP + +E +  F
Sbjct: 130 QKTCPLCRTPFVPDEMQEEF 149

[Close]

BLAST of Carg04133 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Carg04133 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 79  NRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCP 138
           NR  S R+     S+    DC VCL++ +   E+  L C H+FH +CLE WL + N  CP
Sbjct: 59  NRLFSYRY-----SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCP 118

Query: 139 LCRTPLM 146
           LCR+PL+
Sbjct: 119 LCRSPLL 120

[Close]

BLAST of Carg04133 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCR 142
           +C +CL+ +E E+E+  L CGH FH  C++KWL Y N TCPLC+
Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCK 366

[Close]

BLAST of Carg04133 vs. ExPASy TrEMBL
Match: A0A6J1HVX6 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111468336 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.1e-83
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRYP+IRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPNIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. ExPASy TrEMBL
Match: A0A6J1GLE2 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111455329 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.5e-83
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLNAILINAALSISIF+CIVRLILHI+GIRFSSPSSLVPSTDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNAILINAALSISIFRCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KCIVRLILH+VGIR S PSS+V STDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+YLEMFRNRYP IRFDKV+ S+  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KCIVRLILH+VGIR S PSS+V STDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+YLEMFRNRYP IRFDKV+ S+  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Carg04133 vs. ExPASy TrEMBL
Match: A0A5D3D707 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00210 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+FKCIVRLILH+VGIR S PSS+VPSTDSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD  FGSSW+YL+MFRNRYP IRFDKVQ SER EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of Carg04133 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 7.6e-40
Identity = 91/150 (60.67%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L IVGI   SPSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISL-SPSSSSPSSVTVSSEN 60

Query: 61  S--SELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           S  SE  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Carg04133 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 7.6e-40
Identity = 91/150 (60.67%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L IVGI   SPSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISL-SPSSSSPSSVTVSSEN 60

Query: 61  S--SELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           S  SE  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Carg04133 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.5e-15
Identity = 47/145 (32.41%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHIVGIRFSSPSSLVPSTDSFENSS 60
           MG+S  P  SEGV+  +++N  +S+S+ K +VR ++++V            S+++ E  +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHL-SCGH 120
           +  D +   S     +    + S+  ++   +ER   DC VCL  F+ E E++ L SC H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTECLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Carg04133 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 76  MFRNRYPSIRFDKVQGS-ERLEHDCSVCLTQFEPESEINHL-SCGHLFHTECLEKWLDYW 135
           + R   P I+F+++  S E L  +C+VCL +FE E EI  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEEEKSCF 154
             TCPLCRTP + +E +  F
Sbjct: 130 QKTCPLCRTPFVPDEMQEEF 149

[Close]

BLAST of Carg04133 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

The following BLAST results are available for this feature:

BLAST of Carg04133 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572211.1	1.1e-83	100.00	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_023554631.1	2.4e-83	99.35	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]	[more]
XP_022969282.1	2.4e-83	99.35	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima] >XP_022969284.1 p...	[more]
XP_022952716.1	5.2e-83	98.70	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata] >XP_022952717.1...	[more]
XP_038887530.1	1.4e-75	90.91	probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida]	[more]

BLAST of Carg04133 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	1.1e-38	60.67	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	1.6e-13	43.75	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9ZT50	1.6e-10	49.02	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9ZU51	1.6e-10	43.28	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q8LDB8	1.5e-08	52.27	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]

BLAST of Carg04133 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVX6	1.1e-83	99.35	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GLE2	2.5e-83	98.70	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S4E4A9	4.8e-74	88.31	probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3CGH9	4.8e-74	88.31	probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A5D3D707	1.4e-73	88.89	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Carg04133 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	7.6e-40	60.67	RING/U-box superfamily protein	[more]
AT2G04240.2	7.6e-40	60.67	RING/U-box superfamily protein	[more]
AT1G67856.1	8.5e-15	32.41	RING/U-box superfamily protein	[more]
AT3G61460.1	1.1e-14	43.75	brassinosteroid-responsive RING-H2	[more]
AT1G15100.1	1.1e-11	49.02	RING-H2 finger A2A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 1.1E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 3.5E-11 score: 43.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.99088
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 70..146 e-value: 1.8E-18 score: 68.0
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 83..145
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04133-RA	Carg04133-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane