Carg04131 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04131
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RRP15-like protein
Location	Carg_Chr19: 7820866 .. 7824607 (-)
RNA-Seq Expression	Carg04131
Synteny	Carg04131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATATTTCTGTCCGACGCCGTATCAGCAGCTGCCGCCGAACGCTGCACTGTCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGAGTTAATTATATCTGTTTTTCTTCTTCTTAGAAACACAGTGGTTCAGCCCCTTACCTGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGGTTTTATTTATTTTTATATGTTGCTACGTTGGGCTATGTTGGTATGTTCTCTTCACCGACGGAGAAGAAAACTAAGAACGAATATGTTGCAAATTAGAGGAAGATAAAAACAGATTGAATCCGAAGGAACATATAAACATATCATTCTTATCCGAATCATTAGATAAAAAGGATAAAATGTGTAAGAACATGAACATAGCAAAGGAGAAACTCGCATATAGTTTGGGTTTCTAAAAAAAATGATTGAAATTATTGTTATCAATAAAAAAAAACCAATAATGGACAAACAAAATAGAAAGTTAACATTGAGTTTGAGTGTGATTGAATGTCATTGAGTCTTCTTGAGTATACAAGAAACTATAGATGCATATGAACTGGCATAGGGTAGCTTTTGTTGCTCAATTCATGTAATTTTTTTTTCTTAAGCCGTTGATTTCATTTTTTTTTTGGAATCCAAGTACACTGATTTTAAAATCCATCAAAATTCAGGGGTTAAGATTGTTGAAACATTTGTTTGGGATAAGCTGTGCATTTGAATCAGTATCATGGTTGACGACTGGAATGCAGTAGAATTGGTGAGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCGAGGATGAAGAAACAAGATGGGTGGAAGTGGGAACAAAGTTAAGGTTGATAGGAAGATGAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATAACGACGATGACGAGAAAGCTCCGGTGATTGGAGACGAAACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGATCTCGAGCTATCTGAAGACGATGAAAATGGTGATATTCAACCAGGTATAGCTAAGTTTACAGAAGGTTGTAGAGCATTCCGGGCTGCATTACGGAGTATCCTCAAGAAGAGCATATCTGATGAAACTCTGGTAGTATATATCTTAAATGGGACGGAATTATTTTCAATAGTTGAAGTAATAAGAAAAGTAATTGTGCCATGTTTGTGTTGCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGAGGAAAGTTAAAAGGAGAGGCCAAGAAAGAGAAACAAACGGTATTTCCTTTTAAATAAAAGATTTTGCTTGCTTATAATTTAGCTTTTGCTTAGAATTTGTTGATTGCAAATGTGGGATCTCACAATCCACCCCTTTCGGGGTCCAGCGTCCTTGCTGGCCTTCGTTCCCTTCTTCAATCGATGTGGGATCCCCCAATCCACCTCCTTCAGGGCCAGTATTTTTGTTGGCACACCGCCTCGTGTCCACCCCCTTCTGGGTTCAGCCTCCTCGTTGGCACATCACTCGGTGTCTAACTCTGATACCATTTGTAATGGCCCAAGCCTGCCGCTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAATGCGTCTCCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTTGTTTTCTTCTCCAATCGATGTGGGTCTCACAGCAAATGTTTGAATAGGTGGGAGAAAAAGGCCATGTGAAACCTGCTACTTGGATTCTAATGAAAAGTTTCTTATTGGCGTTGCTACTAAAGGAGGTAGCCTAGTTCGATTTTACTTTGAGTTGGGAAAGGTTTTCTTTTTTATTTCAACGGTGATTATTACATCTCTCATCATACTAACACAGTAATCTCCATGTGTATTGCTGCTTGTCGATTGTCAGTTGTCAAGTTGTTTAACGCTGTAAGTAGCCAAATTTTGATATCGGACAACTTTTTTGTCACATCCTCATCTATGTTGCATTCATCGCTGAATTCCATTATTTTGAATATGATACAGGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGTATTAGGCCTTTTACGTAACTTTGATCTCAGAAGTTAACAATTTCACTTTCTTTTATCTTGCCTTGTGAATATGCTGTCCCTAAATTAGCATTCAATTAATTTTGGTGCTTCTGCATGTTGCATTATATTCAATCTTGTAGCTTAATTTTCCTATTCCTATGATGTATGCCACCTTATATTCTGTTTTGTGGTTTCTGCATTGTCCTTGTTGAAAACCCTTGTTATGTAATAGCTCAAACCCACCGCTAGCAGATATTATCTTTTTTGGGCTTTTCTTTTCGAGCTTCCTCTCAAGGTTTTAAAACGTGTTTGGTAGGGAGAGGTTTCCACGTCTTTATAAGGAATGTTCGTTCCCCTCTGCAACCGATGCGGAATCTCACATGTTAAACTCCTAATTAATGAATCATTGGCAACTTTACTAATTTGCTGACTTTGATTGGGAATCTGTGTGGTTGAAGTAGCCAGTGATTTAAAAGGCACGTGTCTCGAATTTATTGACCTATTAGTCTCTCGCGCGTACTTCTAGTCAACTAACACTTTCCCCTGTGGCTTATATAGGACTACTAATGTTTAGCGAACCCTGTTAGACCCGCTTTTGTTTGCATATTAAGACGCTTATTCTTCCGTTCTTGACTTGTGATTATGTGAGTAGCTACTCAATATTGAAGGTGAACGATATCCTTAACTTTTTCGTTCTATCCCGTCTCATACGCAATAAATAAATGCAGGAAAGAAGCTTTCTTTTCTGTGTTGGGCAAGACAATTTTGTCAGCAACAAACAGTAATGCAAAGGTTGGTTATTTTCTGCTATAGAATTTGATAAATTTATTGGAGCTTTTAACCAATTGTTGTTAAATTCTTTATTAATTCTCTTACAAGCAATGATACTTTCGACAAACACCTGAGGAGGCATACCGACTTGTGGCATCCTCATCTTCATTATCGTGTTTATGTGCACTGGAATGGGGACTGGTAGGGGGATGTCCATGGGGTTGGGCAGGGGTCGGGATGGCTTACATGTCCTCACGAAATTTCCTATAAAATTTTATGAAAAAAGGTTGGGATGGGGAATGGGGACTAGTCCATGCAGGGGCGTGGAAAATGGACAGCTCTAGGGGATGGGGTGCATGTTAGTTAAGAGAGTGAAGCTCAGGTCAAGTCACGATCATATATTATCTGTTTCTTCATGTCCATAATGAAACTCAAATGGCCATCTTTATGTTGAACAGTACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAAGATTTACTTTCAAAGCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATCAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTAA

mRNA sequence

CCACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATATTTCTGTCCGACGCCGTATCAGCAGCTGCCGCCGAACGCTGCACTGTCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGATGGTTCAGCCCCTTACCTGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGTAGAATTGGTGAGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCGAGGATGAAGAAACAAGATGGGTGGAAGTGGGAACAAAGTTAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATAACGACGATGACGAGAAAGCTCCGGTGATTGGAGACGAAACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGATCTCGAGCTATCTGAAGACGATGAAAATGGTGATATTCAACCAGGTATAGCTAAGTTTACAGAAGGTTGTAGAGCATTCCGGGCTGCATTACGGAGTATCCTCAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGAGGAAAGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGAAAGAAGCTTTCTTTTCTGTGTTGGGCAAGACAATTTTGTCAGCAACAAACATACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAAGATTTACTTTCAAAGCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATCAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTAA

Coding sequence (CDS)

CCACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATATTTCTGTCCGACGCCGTATCAGCAGCTGCCGCCGAACGCTGCACTGTCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGATGGTTCAGCCCCTTACCTGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGTAGAATTGGTGAGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCGAGGATGAAGAAACAAGATGGGTGGAAGTGGGAACAAAGTTAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATAACGACGATGACGAGAAAGCTCCGGTGATTGGAGACGAAACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGATCTCGAGCTATCTGAAGACGATGAAAATGGTGATATTCAACCAGGTATAGCTAAGTTTACAGAAGGTTGTAGAGCATTCCGGGCTGCATTACGGAGTATCCTCAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGAGGAAAGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGAAAGAAGCTTTCTTTTCTGTGTTGGGCAAGACAATTTTGTCAGCAACAAACATACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAA

Protein sequence

PRSPSITAPYSVDELRTIFLSDAVSAAAAERCTVSCRSIPTKSSLPTPSHTLLPLRAIRWFSPLPAPPLRIFRSPSRIGERCEEKEKDGFQEQEKTEDEETRWVEVGTKLRNSSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVNKAQHAQKGLNPSRAKDVKGKKLSFLCWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKDWDKMPVR

Homology

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BLAST of Carg04131 vs. NCBI nr
Match: KAG7011847.1 (hypothetical protein SDJN02_26753, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 598.6 bits (1542), Expect = 3.1e-167
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   PRSPSITAPYSVDELRTIFLSDAVSAAAAERCTVSCRSIPTKSSLPTPSHTLLPLRAIRW 60
           PRSPSITAPYSVDELRTIFLSDAVSAAAAERCTVSCRSIPTKSSLPTPSHTLLPLRAIRW
Sbjct: 1   PRSPSITAPYSVDELRTIFLSDAVSAAAAERCTVSCRSIPTKSSLPTPSHTLLPLRAIRW 60

Query: 61  FSPLPAPPLRIFRSPSRIGERCEEKEKDGFQEQEKTEDEETRWVEVGTKLRNSSKSGREY 120
           FSPLPAPPLRIFRSPSRIGERCEEKEKDGFQEQEKTEDEETRWVEVGTKLRNSSKSGREY
Sbjct: 61  FSPLPAPPLRIFRSPSRIGERCEEKEKDGFQEQEKTEDEETRWVEVGTKLRNSSKSGREY 120

Query: 121 NLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQP 180
           NLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQP
Sbjct: 121 NLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQP 180

Query: 181 GIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVNKAQHAQ 240
           GIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVNKAQHAQ
Sbjct: 181 GIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVNKAQHAQ 240

Query: 241 KGLNPSRAKDVKGKKLSFLCWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKD 300
           KGLNPSRAKDVKGKKLSFLCWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKD
Sbjct: 241 KGLNPSRAKDVKGKKLSFLCWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKD 300

Query: 301 WDKMPVR 308
           WDKMPVR
Sbjct: 301 WDKMPVR 307

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BLAST of Carg04131 vs. NCBI nr
Match: XP_022952710.1 (LOW QUALITY PROTEIN: RRP15-like protein [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-74
Identity = 173/258 (67.05%), Postives = 180/258 (69.77%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 163
           V+V  K++    K   EYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD
Sbjct: 38  VKVHRKMKKLFQKRAXEYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 97

Query: 164 VNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE 223
           +NADLE SEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE
Sbjct: 98  INADLEPSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE 157

Query: 224 KLAEEEAERK---------------------------------------------VNKAQ 283
           KLAEEEAERK                                             VNKAQ
Sbjct: 158 KLAEEEAERKVKGEAKKEKQTVGEKGHVKPATYLDSNEKFLIGVATKGVVKLFNAVNKAQ 217

Query: 284 HAQKGLNPSRAKDV----KGKKLSFLCWARQFCQQQTY------TSGGAVDAEGPAWAPL 306
           HAQKGLNPSRAKDV    K +K +F     +     T       TSGGAVDAEGPAWAPL
Sbjct: 218 HAQKGLNPSRAKDVEAINKRRKEAFFSVLGKTILSATNSNAKLDTSGGAVDAEGPAWAPL 277

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BLAST of Carg04131 vs. NCBI nr
Match: XP_038888922.1 (RRP15-like protein [Benincasa hispida] >XP_038888940.1 RRP15-like protein [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 4.1e-63
Identity = 151/259 (58.30%), Postives = 169/259 (65.25%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEGK 163
           V+V  K++    K  REYN +D+D+DEKAP++ +E K  + SH EEVGDEEFSEGE+EGK
Sbjct: 38  VKVDRKMKKLFQKRAREYNSEDDDNDEKAPMVENERKVLVCSHAEEVGDEEFSEGEDEGK 97

Query: 164 DVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVA 223
           DVNAD+ELSEDDENG+IQPGI KF EGCRAFRAA RSILKKSISDETLGPILSANKKL+ 
Sbjct: 98  DVNADVELSEDDENGEIQPGITKFAEGCRAFRAAFRSILKKSISDETLGPILSANKKLIV 157

Query: 224 EKLAEEEAERK---------------------------------------------VNKA 283
           EKLAEEEAERK                                             VNKA
Sbjct: 158 EKLAEEEAERKVKGLAKKEKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKA 217

Query: 284 QHAQKGLNPSRAKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWAP 306
           QHAQKGLNPSR KD K     +K +F         +      +  TSGGA DAEGPAWAP
Sbjct: 218 QHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAP 277

[Close]

BLAST of Carg04131 vs. NCBI nr
Match: XP_004144556.1 (RRP15-like protein [Cucumis sativus] >XP_011658649.1 RRP15-like protein [Cucumis sativus] >KGN43394.1 hypothetical protein Csa_020346 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 5.0e-61
Identity = 152/260 (58.46%), Postives = 167/260 (64.23%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDD-EKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEG 163
           V++  K++    K  REYN DD+DDD EKAP +  E+K  + SH EEVGDEEFSEGEEE 
Sbjct: 38  VKIDKKMKKLFQKRAREYNSDDDDDDGEKAPRVKKESKILVRSHEEEVGDEEFSEGEEER 97

Query: 164 KDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLV 223
           KDVNAD+ELSEDDENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLV
Sbjct: 98  KDVNADVELSEDDENGEIQPGITKFTEGCRAFRAAFMSILKKNISDETLGPILSANKKLV 157

Query: 224 AEKLAEEEAERK---------------------------------------------VNK 283
           AEKLAEEEAERK                                             VNK
Sbjct: 158 AEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNK 217

Query: 284 AQHAQKGLNPSRAKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWA 306
           AQHAQKGLNPSR KD K     +K +F         +      +  TSGGA D EGPAWA
Sbjct: 218 AQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADTEGPAWA 277

[Close]

BLAST of Carg04131 vs. NCBI nr
Match: XP_008462030.1 (PREDICTED: RRP15-like protein [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-60
Identity = 149/248 (60.08%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 115 KSGREYNLDDNDDD-EKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSED 174
           K  REYN DD+D+D EKAP + +E+K  + SH EEVGDEE SEGEEE KDVNAD+ELSED
Sbjct: 50  KRAREYNSDDDDNDGEKAPTVKNESKILVHSHEEEVGDEELSEGEEERKDVNADVELSED 109

Query: 175 DENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK 234
           DENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK
Sbjct: 110 DENGEIQPGITKFTEGCRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERK 169

Query: 235 ---------------------------------------------VNKAQHAQKGLNPSR 294
                                                        VNKAQHAQKGLNPSR
Sbjct: 170 VKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR 229

Query: 295 AKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSK 306
            KD K     +K +F         +      +  TSGGA DAEGPAWAPLRDNYMLTNSK
Sbjct: 230 TKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSK 289

[Close]

BLAST of Carg04131 vs. ExPASy TrEMBL
Match: A0A6J1GMJ1 (LOW QUALITY PROTEIN: RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111455323 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 5.1e-75
Identity = 173/258 (67.05%), Postives = 180/258 (69.77%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 163
           V+V  K++    K   EYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD
Sbjct: 38  VKVHRKMKKLFQKRAXEYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 97

Query: 164 VNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE 223
           +NADLE SEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE
Sbjct: 98  INADLEPSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE 157

Query: 224 KLAEEEAERK---------------------------------------------VNKAQ 283
           KLAEEEAERK                                             VNKAQ
Sbjct: 158 KLAEEEAERKVKGEAKKEKQTVGEKGHVKPATYLDSNEKFLIGVATKGVVKLFNAVNKAQ 217

Query: 284 HAQKGLNPSRAKDV----KGKKLSFLCWARQFCQQQTY------TSGGAVDAEGPAWAPL 306
           HAQKGLNPSRAKDV    K +K +F     +     T       TSGGAVDAEGPAWAPL
Sbjct: 218 HAQKGLNPSRAKDVEAINKRRKEAFFSVLGKTILSATNSNAKLDTSGGAVDAEGPAWAPL 277

[Close]

BLAST of Carg04131 vs. ExPASy TrEMBL
Match: A0A0A0K320 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 152/260 (58.46%), Postives = 167/260 (64.23%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDD-EKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEG 163
           V++  K++    K  REYN DD+DDD EKAP +  E+K  + SH EEVGDEEFSEGEEE 
Sbjct: 38  VKIDKKMKKLFQKRAREYNSDDDDDDGEKAPRVKKESKILVRSHEEEVGDEEFSEGEEER 97

Query: 164 KDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLV 223
           KDVNAD+ELSEDDENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLV
Sbjct: 98  KDVNADVELSEDDENGEIQPGITKFTEGCRAFRAAFMSILKKNISDETLGPILSANKKLV 157

Query: 224 AEKLAEEEAERK---------------------------------------------VNK 283
           AEKLAEEEAERK                                             VNK
Sbjct: 158 AEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNK 217

Query: 284 AQHAQKGLNPSRAKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWA 306
           AQHAQKGLNPSR KD K     +K +F         +      +  TSGGA D EGPAWA
Sbjct: 218 AQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADTEGPAWA 277

[Close]

BLAST of Carg04131 vs. ExPASy TrEMBL
Match: A0A1S3CFX9 (RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 9.3e-61
Identity = 149/248 (60.08%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 115 KSGREYNLDDNDDD-EKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSED 174
           K  REYN DD+D+D EKAP + +E+K  + SH EEVGDEE SEGEEE KDVNAD+ELSED
Sbjct: 50  KRAREYNSDDDDNDGEKAPTVKNESKILVHSHEEEVGDEELSEGEEERKDVNADVELSED 109

Query: 175 DENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK 234
           DENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK
Sbjct: 110 DENGEIQPGITKFTEGCRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERK 169

Query: 235 ---------------------------------------------VNKAQHAQKGLNPSR 294
                                                        VNKAQHAQKGLNPSR
Sbjct: 170 VKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR 229

Query: 295 AKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSK 306
            KD K     +K +F         +      +  TSGGA DAEGPAWAPLRDNYMLTNSK
Sbjct: 230 TKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSK 289

[Close]

BLAST of Carg04131 vs. ExPASy TrEMBL
Match: A0A5A7UXA3 (RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001920 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60
Identity = 148/244 (60.66%), Postives = 161/244 (65.98%), Query Frame = 0


Query: 115 KSGREYNLDDN-DDDEKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSED 174
           K  REYN DD+ +D EKAP + +E+K  + SH EEVGDEE SEGEEE KDVNAD+ELSED
Sbjct: 50  KRAREYNSDDDGNDGEKAPTVKNESKILVHSHEEEVGDEELSEGEEERKDVNADVELSED 109

Query: 175 DENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK 234
           DENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK
Sbjct: 110 DENGEIQPGITKFTEGCRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERK 169

Query: 235 -----------------------------------------VNKAQHAQKGLNPSRAKDV 294
                                                    VNKAQHAQKGLNPSR KD 
Sbjct: 170 VKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGGSIVNKAQHAQKGLNPSRTKDA 229

Query: 295 KG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKDW 306
           K     +K +F         +      +  TSGGA DAEGPAWAPLRDNYMLTNSKLKDW
Sbjct: 230 KAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSKLKDW 289

[Close]

BLAST of Carg04131 vs. ExPASy TrEMBL
Match: A0A6J1C2C5 (RRP15-like protein OS=Momordica charantia OX=3673 GN=LOC111007639 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 4.6e-60
Identity = 152/261 (58.24%), Postives = 166/261 (63.60%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEK---APVIGDETKTSMLSHEEVGDEEFSEGE-E 163
           V+V  K++    K  REYN DD+DD+E+   AP +GDE+  S+ S EE  DEEF E E  
Sbjct: 38  VKVDRKMKKLFRKRAREYNSDDDDDEEEEAAAPAVGDESTVSLRSPEEDRDEEFPEDEGG 97

Query: 164 EGKDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKK 223
           EGKDVNAD ELSEDDENG+IQPGI KFTEGCRAFRAA RSILKKS+SDETLGPILSANKK
Sbjct: 98  EGKDVNADAELSEDDENGEIQPGITKFTEGCRAFRAAFRSILKKSVSDETLGPILSANKK 157

Query: 224 LVAEKLAEEEAERK---------------------------------------------V 283
           LVAEKLAEEEAERK                                             V
Sbjct: 158 LVAEKLAEEEAERKVKGEAKKEKQLVAEKGHVKPANYLDFHEKFLIGVATKGVVKLFNAV 217

Query: 284 NKAQHAQKGLNPSRAKDVKG----KKLSFLCWARQFCQQQT-----YTSGGAVDAEGPAW 306
           NKAQHAQKGLNPSRAKD K     +K +F     +     T      TS GAVDAEGPAW
Sbjct: 218 NKAQHAQKGLNPSRAKDAKAITKRRKEAFFSELGKTTLSATNNSKVNTSAGAVDAEGPAW 277

[Close]

BLAST of Carg04131 vs. TAIR 10
Match: AT5G48240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-31
Identity = 92/238 (38.66%), Postives = 123/238 (51.68%), Query Frame = 0


Query: 115 KSGREYNLDDN--DDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSED 174
           K  R+YN DD+  +DDE         +  + S   +G      GEE+        E S+ 
Sbjct: 57  KRARDYNSDDDEEEDDESKKQPEVTIREKIFSDANMGPNYEEIGEEDND------ENSDG 116

Query: 175 DENGDIQPGIAKF-TEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAER 234
           +++G+I+ GI KF T+GC AF+ A ++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+
Sbjct: 117 EDHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEK 176

Query: 235 K---------------------------------------------VNKAQHAQKGLNPS 294
           K                                             VNKAQHAQKGLNPS
Sbjct: 177 KAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPS 236

Query: 295 RAKDVKG-KKLSFLCWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKDWDK 304
           R+KD K  KK     +  +  + +T T     + E P WAPLRDNYML N KLKDWDK
Sbjct: 237 RSKDAKVLKKRRKEAFLSELGKTKTDTKAHKSEDEAPVWAPLRDNYMLANPKLKDWDK 288

[Close]

BLAST of Carg04131 vs. TAIR 10
Match: AT5G48240.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-26
Identity = 97/285 (34.04%), Postives = 128/285 (44.91%), Query Frame = 0


Query: 115 KSGREYNLDDN--DDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSED 174
           K  R+YN DD+  +DDE         +  + S   +G      GEE+        E S+ 
Sbjct: 57  KRARDYNSDDDEEEDDESKKQPEVTIREKIFSDANMGPNYEEIGEEDND------ENSDG 116

Query: 175 DENGDIQPGIAKF-TEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAER 234
           +++G+I+ GI KF T+GC AF+ A ++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+
Sbjct: 117 EDHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEK 176

Query: 235 K---------------------------------------------VNKAQHAQKGLNPS 294
           K                                             VNKAQHAQKGLNPS
Sbjct: 177 KAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPS 236

Query: 295 RAKDV----KGKKLSFLCW------------ARQ-------------------------- 304
           R+KD     K +K +FL              AR+                          
Sbjct: 237 RSKDAKVLKKRRKEAFLSELGKTKTDTKPFDARRNKLVFCLDLAPIESHEKNHLMSESKL 296

[Close]

BLAST of Carg04131 vs. TAIR 10
Match: AT5G48240.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-18
Identity = 68/186 (36.56%), Postives = 94/186 (50.54%), Query Frame = 0


Query: 115 KSGREYNLDDN--DDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSED 174
           K  R+YN DD+  +DDE         +  + S   +G      GEE+        E S+ 
Sbjct: 57  KRARDYNSDDDEEEDDESKKQPEVTIREKIFSDANMGPNYEEIGEEDND------ENSDG 116

Query: 175 DENGDIQPGIAKF-TEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAER 234
           +++G+I+ GI KF T+GC AF+ A ++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+
Sbjct: 117 EDHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEK 176

Query: 235 K---------------------------------------------VNKAQHAQKGLNPS 253
           K                                             VNKAQHAQKGLNPS
Sbjct: 177 KAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPS 236

The following BLAST results are available for this feature:

BLAST of Carg04131 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011847.1	3.1e-167	100.00	hypothetical protein SDJN02_26753, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022952710.1	1.0e-74	67.05	LOW QUALITY PROTEIN: RRP15-like protein [Cucurbita moschata]	[more]
XP_038888922.1	4.1e-63	58.30	RRP15-like protein [Benincasa hispida] >XP_038888940.1 RRP15-like protein [Benin...	[more]
XP_004144556.1	5.0e-61	58.46	RRP15-like protein [Cucumis sativus] >XP_011658649.1 RRP15-like protein [Cucumis...	[more]
XP_008462030.1	1.9e-60	60.08	PREDICTED: RRP15-like protein [Cucumis melo]	[more]

BLAST of Carg04131 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GMJ1	5.1e-75	67.05	LOW QUALITY PROTEIN: RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0K320	2.4e-61	58.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1	[more]
A0A1S3CFX9	9.3e-61	60.08	RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1	[more]
A0A5A7UXA3	2.1e-60	60.66	RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0...	[more]
A0A6J1C2C5	4.6e-60	58.24	RRP15-like protein OS=Momordica charantia OX=3673 GN=LOC111007639 PE=3 SV=1	[more]

BLAST of Carg04131 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48240.1	2.6e-31	38.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.3	2.5e-26	34.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.2	1.5e-18	36.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..149
IPR012459	Ribosomal RNA-processing protein 15	PANTHER	PTHR13245	RRP15-LIKE PROTEIN	coord: 92..253 coord: 233..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04131-RA	Carg04131-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing