Carg04123 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04123
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr19: 7755588 .. 7756682 (+)
RNA-Seq ExpressionCarg04123
SyntenyCarg04123
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCGTTGCAGATGCAATTACAGTCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAAGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCTAAATTCGCCGGGGAAGTATCTGCTCCTTACCCTGAGGATAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGAAGGGCCGATGTCGCGGCCAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGCACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGTTTTCTGAATCAATGCAGGGGAAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTTGATGGGCTTTGCAAAGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGTTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCTTTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACGACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGTGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGATTTAAGAGAATTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGA

mRNA sequence

ATGGGAGCGTTGCAGATGCAATTACAGTCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAAGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCTAAATTCGCCGGGGAAGTATCTGCTCCTTACCCTGAGGATAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGAAGGGCCGATGTCGCGGCCAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGCACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGTTTTCTGAATCAATGCAGGGGAAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTTGATGGGCTTTGCAAAGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGTTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCTTTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACGACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGTGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGATTTAAGAGAATTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGA

Coding sequence (CDS)

ATGGGAGCGTTGCAGATGCAATTACAGTCTCGCCTTCGAGTTTCGAAGATTTTGTCTTCAACAATTCGGAATTGGGAAAGAGGCTTTCCTCTGCTCCATGATCCATTGCGAACGCCGGATTTGTCACTCTCGCCGGTGGAATCTCGCTGTTTTAGCTCCAATTCCATGGATGACGATTGGAACTTCTCAAAGTCCGAGCCGAGAAGCAGCCCGCCGCAACGACGTTCTCCCCCGGATCCTCGGGAAGCTCGTCGAGTTCCTAAATTCGCCGGGGAAGTATCTGCTCCTTACCCTGAGGATAATCGGAATCAACGGTTTAATAGGCATTCGGAAGGTTCCTCGTCCCGATTCGCAAACGAAGGGCCGATGTCGCGGCCAAGGAATGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAACACTGACAATCAGAGCACTAGTACAGAGAAAATCGAGCCGAGCTCTTCTGCTCAGTTTTCTGAATCAATGCAGGGGAAGCAATCGCAACCACAGTGTCCTCCAGAAGCGGATGAGATATTCAGGAAAATGAAGGAAACTGGTCTAATTCCCAACGCTGTTGCTATGCTTGATGGGCTTTGCAAAGATGGGCTTATCCAAGAAGCAATGAAACTATTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACTGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGTTTGATGAAGCAATTAGGATTTTCAGGAAAATGCAGAATAATGGCATTTCTCCCAATGCCTTCAGTTACGGCATCTTGATACAGGGACTGTACAAATCCAAACAATTAGAGGATGCCGTATCATTTTGCTTTGAGATGTTAGAATCTGGGCATTCTCCAAATCTAACGACTTTTGTCGGCCTAATTGATGAGTTATGCAAAGAAAAGGGGGTGGACGAAGCTCATACTGTCATAGAAACCTTAAAACAAAAGGGATTCTTGATTAATGAGAAAGATTTAAGAGAATTCTTGAATAAAAGAGCCCCATTTTCTCCACATATCTGGGAACTAATCTTCGGGAAGAAAACGAAGGAATTTTTCTGA

Protein sequence

MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDWNFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANEGPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPEADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKTKEFF
Homology
BLAST of Carg04123 vs. NCBI nr
Match: KAG7011839.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 721.5 bits (1861), Expect = 3.7e-204
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE
Sbjct: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT
Sbjct: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT
Sbjct: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. NCBI nr
Match: XP_022952706.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] >XP_022952707.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata])

HSP 1 Score: 711.1 bits (1834), Expect = 5.0e-201
Identity = 358/364 (98.35%), Postives = 361/364 (99.18%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFS+SEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAN+
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQ SESMQGKQSQPQCPPE
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAEK DEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFC EMLESGHSPNLT
Sbjct: 241 KAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLR+FLNKRAPFSPHIWELIFGKKT
Sbjct: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. NCBI nr
Match: XP_023554525.1 (pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554526.1 pentatricopeptide repeat-containing protein At4g38150-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 702.6 bits (1812), Expect = 1.8e-198
Identity = 356/364 (97.80%), Postives = 358/364 (98.35%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFS+SEPRSSPPQRRSPPDPREARRVPKFAGE SAPYPEDNRNQRFNRHSEGSSSRFANE
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSR RNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQG+QSQPQCPPE
Sbjct: 121 GPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGEQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAEK DEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFC EMLESGHSPNLT
Sbjct: 241 KAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           TFVGLIDELCKEKG DEAHTVIETLKQKGFLINEK LREFLNKRAPFSPHIWELIFGKKT
Sbjct: 301 TFVGLIDELCKEKGEDEAHTVIETLKQKGFLINEKALREFLNKRAPFSPHIWELIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. NCBI nr
Match: XP_022969144.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >XP_022969146.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima])

HSP 1 Score: 690.3 bits (1780), Expect = 9.2e-195
Identity = 349/364 (95.88%), Postives = 353/364 (96.98%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKIL STIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFS+SEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRH EGS SRFANE
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSR R+ESLSQKDFSFLEKFKLNTDN STSTEK EPSSSAQFSESMQGKQSQPQCPPE
Sbjct: 121 GPMSRRRSESLSQKDFSFLEKFKLNTDNLSTSTEKTEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAE  DEAIRIFRKMQNNGISPNAFSYG+LIQGLYK K+LEDAVSFC EMLESGHSPNLT
Sbjct: 241 KAENLDEAIRIFRKMQNNGISPNAFSYGVLIQGLYKCKKLEDAVSFCIEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEK LREFLNKRAPFSPHIWELIFGKKT
Sbjct: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKALREFLNKRAPFSPHIWELIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. NCBI nr
Match: KAG6572199.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 625.5 bits (1612), Expect = 2.8e-175
Identity = 317/320 (99.06%), Postives = 318/320 (99.38%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFS+SEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAEK DEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFC EMLESGHSPNLT
Sbjct: 241 KAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHT 321
           TFVGLIDELCKEKGVDEAHT
Sbjct: 301 TFVGLIDELCKEKGVDEAHT 320

BLAST of Carg04123 vs. ExPASy Swiss-Prot
Match: Q9SZL5 (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-75
Identity = 156/271 (57.56%), Postives = 188/271 (69.37%), Query Frame = 0

Query: 96  PYPEDNRNQRFNRHSEGSSSRFANEGPMSRPRNESLSQ---KDFSFLEKFKLNTDNQSTS 155
           P P  NR  R  R     SS    E P  +  N   S     D  FLE+FKL  +  S  
Sbjct: 46  PEPLPNRPLRGER-----SSNSHREPPARQAHNLGKSDTTLSDDGFLEQFKLGVNQDSRE 105

Query: 156 TEKIEPSSSAQFSESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQ 215
           T K E     Q+ +       +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+Q
Sbjct: 106 TPKPE-----QYPQ-------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQ 165

Query: 216 EAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILI 275
           EAMKLFGL+R+KGTIPEVV+YTAVV+ FCKA K ++A RIFRKMQNNGI+PNAFSYG+L+
Sbjct: 166 EAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLV 225

Query: 276 QGLYKSKQLEDAVSFCFEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFL 335
           QGLY    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KGV++A + I+TL QKGF 
Sbjct: 226 QGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFA 285

Query: 336 INEKDLREFLNKRAPFSPHIWELIFGKKTKE 363
           +N K ++EF++KRAPF    WE IF KK  E
Sbjct: 286 VNVKAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

BLAST of Carg04123 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-22
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 0

Query: 181 ADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVD 240
           A E+ RKM+E  +  +AV    ++DGLCKDG +  A  LF  +  KG   +++ Y  ++ 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 241 GFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSP 300
           GFC A ++D+  ++ R M    ISPN  ++ +LI    K  +L +A     EM++ G +P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 301 NLTTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
           N  T+  LID  CKE  ++EA  +++ +  KG
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

BLAST of Carg04123 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-22
Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = 0

Query: 180 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 239
           EA+E F +M   G++P+ V    ++DG CK G I+ A K F  +  +   P+V+ YTA++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 240 DGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHS 299
            GFC+     EA ++F +M   G+ P++ ++  LI G  K+  ++DA      M+++G S
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 300 PNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLIN 334
           PN+ T+  LID LCKE  +D A+ ++  + + G   N
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490

BLAST of Carg04123 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.4e-22
Identity = 54/150 (36.00%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 183 EIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGF 242
           +IF +M + G  P++     ++ GLC+ G I EA KLF  + EK   P VV YT++++G 
Sbjct: 178 KIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL 237

Query: 243 CKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNL 302
           C ++  DEA+R   +M++ GI PN F+Y  L+ GL K  +   A+     M+  G  PN+
Sbjct: 238 CGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNM 297

Query: 303 TTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
            T+  LI  LCKE+ + EA  +++ +  +G
Sbjct: 298 VTYTTLITGLCKEQKIQEAVELLDRMNLQG 327

BLAST of Carg04123 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-22
Identity = 46/151 (30.46%), Postives = 92/151 (60.93%), Query Frame = 0

Query: 180 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 239
           EA E++ +M   G+ P+ +   +++DG CK+  + EA ++F L+  KG  P++V Y+ ++
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392

Query: 240 DGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHS 299
           + +CKA++ D+ +R+FR++ + G+ PN  +Y  L+ G  +S +L  A     EM+  G  
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452

Query: 300 PNLTTFVGLIDELCKEKGVDEAHTVIETLKQ 328
           P++ T+  L+D LC    +++A  + E +++
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQK 483

BLAST of Carg04123 vs. ExPASy TrEMBL
Match: A0A6J1GKZ0 (pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita moschata OX=3662 GN=LOC111455321 PE=4 SV=1)

HSP 1 Score: 711.1 bits (1834), Expect = 2.4e-201
Identity = 358/364 (98.35%), Postives = 361/364 (99.18%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFS+SEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAN+
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQ SESMQGKQSQPQCPPE
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAEK DEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFC EMLESGHSPNLT
Sbjct: 241 KAEKLDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCIEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLR+FLNKRAPFSPHIWELIFGKKT
Sbjct: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLRDFLNKRAPFSPHIWELIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. ExPASy TrEMBL
Match: A0A6J1I1Q2 (pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita maxima OX=3661 GN=LOC111468227 PE=4 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 4.4e-195
Identity = 349/364 (95.88%), Postives = 353/364 (96.98%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           MGALQMQLQSRLRVSKIL STIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
           NFS+SEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRH EGS SRFANE
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           GPMSR R+ESLSQKDFSFLEKFKLNTDN STSTEK EPSSSAQFSESMQGKQSQPQCPPE
Sbjct: 121 GPMSRRRSESLSQKDFSFLEKFKLNTDNLSTSTEKTEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAE  DEAIRIFRKMQNNGISPNAFSYG+LIQGLYK K+LEDAVSFC EMLESGHSPNLT
Sbjct: 241 KAENLDEAIRIFRKMQNNGISPNAFSYGVLIQGLYKCKKLEDAVSFCIEMLESGHSPNLT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEK LREFLNKRAPFSPHIWELIFGKKT
Sbjct: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKALREFLNKRAPFSPHIWELIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. ExPASy TrEMBL
Match: A0A6J1C2J3 (pentatricopeptide repeat-containing protein At4g38150 OS=Momordica charantia OX=3673 GN=LOC111007869 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 3.3e-158
Identity = 289/364 (79.40%), Postives = 319/364 (87.64%), Query Frame = 0

Query: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60
           M ALQ+QLQSRLR+SKI+SS+I   ER  PLLHD LRT D SL P +SRCFSSNSMDDDW
Sbjct: 1   MAALQLQLQSRLRMSKIVSSSIWKCERQLPLLHDSLRTQDFSLLPTQSRCFSSNSMDDDW 60

Query: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120
             S SEPRS+PP RRSPPD RE RRVPKF+  VSA YP D+RN+R N+ SEGSS RF NE
Sbjct: 61  AISNSEPRSNPPHRRSPPDSREPRRVPKFSDGVSASYPGDDRNRRINKRSEGSSFRFDNE 120

Query: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180
           G +SR R+E LSQKDFSFLEKFKLNTDNQS+S EK E SS+ +FSES+Q KQSQPQ PPE
Sbjct: 121 GGISRQRSEFLSQKDFSFLEKFKLNTDNQSSSKEKTEQSSAPRFSESVQEKQSQPQRPPE 180

Query: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240
           ADEIF+KMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVV+YTAVVDGFC
Sbjct: 181 ADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDGFC 240

Query: 241 KAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLT 300
           KAEK DEAIRIFRKMQ NGISPNAFS+G+LIQGLYK  +LE+A+ FC EMLESGHSPN+T
Sbjct: 241 KAEKLDEAIRIFRKMQKNGISPNAFSFGVLIQGLYKCNKLEEAIGFCIEMLESGHSPNVT 300

Query: 301 TFVGLIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKT 360
           T VGL+DELCKE+G +EA +VIETLKQKGFL+NEK LREFLNKRAPFSP+IWE IFGKKT
Sbjct: 301 TLVGLVDELCKERGTEEARSVIETLKQKGFLLNEKALREFLNKRAPFSPNIWEAIFGKKT 360

Query: 361 KEFF 365
           KEFF
Sbjct: 361 KEFF 364

BLAST of Carg04123 vs. ExPASy TrEMBL
Match: A0A1S3CFW0 (pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN=LOC103500481 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.3e-149
Identity = 288/360 (80.00%), Postives = 309/360 (85.83%), Query Frame = 0

Query: 7   QLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDWNFSKSE 66
           Q QSRL+VSKILSS+IR WE  FPLLH+PLRTPD SLSP  SR FSSNSMDDD  FS+SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANEGPMSRP 126
           PR++PPQRR PPD REARRVP+  G V+  Y  DNRNQRFNRHSEGSSSRF NEG  SR 
Sbjct: 65  PRNTPPQRRFPPDHREARRVPR--GGVTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

Query: 127 RNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQFSESMQGK-QSQPQCPPEADEI 186
           R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA  SESMQ K QSQ Q PP ADEI
Sbjct: 125 RSESLSQKDFSFLEKFKLNTDNQSSGNEKTEENSSSAPVSESMQEKQQSQHQRPPAADEI 184

Query: 187 FRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEK 246
           FRKMKE+GLIPNAVAMLDGLCKDGLIQEAMKLF LIREKGTIPEVV+YTAVVDGFCKAEK
Sbjct: 185 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYTAVVDGFCKAEK 244

Query: 247 FDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLTTFVG 306
           FDEAIRIFRKMQN GISPNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PNLTTFVG
Sbjct: 245 FDEAIRIFRKMQNKGISPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPNLTTFVG 304

Query: 307 LIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKTKEFF 365
           LID LC EKGVDEAH V+ET KQKGFLI+EK LREFLNKRAPFSP IW++ FG K   FF
Sbjct: 305 LIDVLCSEKGVDEAHNVVETFKQKGFLIDEKALREFLNKRAPFSPDIWKVFFGNKKAPFF 360

BLAST of Carg04123 vs. ExPASy TrEMBL
Match: A0A5D3D5J5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00030 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.3e-149
Identity = 288/360 (80.00%), Postives = 309/360 (85.83%), Query Frame = 0

Query: 7   QLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDWNFSKSE 66
           Q QSRL+VSKILSS+IR WE  FPLLH+PLRTPD SLSP  SR FSSNSMDDD  FS+SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANEGPMSRP 126
           PR++PPQRR PPD REARRVP+  G V+  Y  DNRNQRFNRHSEGSSSRF NEG  SR 
Sbjct: 65  PRNTPPQRRFPPDHREARRVPR--GGVTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

Query: 127 RNESLSQKDFSFLEKFKLNTDNQSTSTEKIEP-SSSAQFSESMQGK-QSQPQCPPEADEI 186
           R+ESLSQKDFSFLEKFKLNTDNQS+  EK E  SSSA  SESMQ K QSQ Q PP ADEI
Sbjct: 125 RSESLSQKDFSFLEKFKLNTDNQSSGNEKTEENSSSAPVSESMQEKQQSQHQRPPAADEI 184

Query: 187 FRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEK 246
           FRKMKE+GLIPNAVAMLDGLCKDGLIQEAMKLF LIREKGTIPEVV+YTAVVDGFCKAEK
Sbjct: 185 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYTAVVDGFCKAEK 244

Query: 247 FDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSPNLTTFVG 306
           FDEAIRIFRKMQN GISPNAFS+G+LIQGLYK K+L+DAV+FC EMLESGH PNLTTFVG
Sbjct: 245 FDEAIRIFRKMQNKGISPNAFSFGVLIQGLYKCKKLDDAVAFCNEMLESGHLPNLTTFVG 304

Query: 307 LIDELCKEKGVDEAHTVIETLKQKGFLINEKDLREFLNKRAPFSPHIWELIFGKKTKEFF 365
           LID LC EKGVDEAH V+ET KQKGFLI+EK LREFLNKRAPFSP IW++ FG K   FF
Sbjct: 305 LIDVLCSEKGVDEAHNVVETFKQKGFLIDEKALREFLNKRAPFSPDIWKVFFGNKKAPFF 360

BLAST of Carg04123 vs. TAIR 10
Match: AT4G38150.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-76
Identity = 156/271 (57.56%), Postives = 188/271 (69.37%), Query Frame = 0

Query: 96  PYPEDNRNQRFNRHSEGSSSRFANEGPMSRPRNESLSQ---KDFSFLEKFKLNTDNQSTS 155
           P P  NR  R  R     SS    E P  +  N   S     D  FLE+FKL  +  S  
Sbjct: 46  PEPLPNRPLRGER-----SSNSHREPPARQAHNLGKSDTTLSDDGFLEQFKLGVNQDSRE 105

Query: 156 TEKIEPSSSAQFSESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQ 215
           T K E     Q+ +       +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+Q
Sbjct: 106 TPKPE-----QYPQ-------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQ 165

Query: 216 EAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILI 275
           EAMKLFGL+R+KGTIPEVV+YTAVV+ FCKA K ++A RIFRKMQNNGI+PNAFSYG+L+
Sbjct: 166 EAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLV 225

Query: 276 QGLYKSKQLEDAVSFCFEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFL 335
           QGLY    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KGV++A + I+TL QKGF 
Sbjct: 226 QGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFA 285

Query: 336 INEKDLREFLNKRAPFSPHIWELIFGKKTKE 363
           +N K ++EF++KRAPF    WE IF KK  E
Sbjct: 286 VNVKAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

BLAST of Carg04123 vs. TAIR 10
Match: AT4G38150.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-76
Identity = 156/271 (57.56%), Postives = 188/271 (69.37%), Query Frame = 0

Query: 96  PYPEDNRNQRFNRHSEGSSSRFANEGPMSRPRNESLSQ---KDFSFLEKFKLNTDNQSTS 155
           P P  NR  R  R     SS    E P  +  N   S     D  FLE+FKL  +  S  
Sbjct: 46  PEPLPNRPLRGER-----SSNSHREPPARQAHNLGKSDTTLSDDGFLEQFKLGVNQDSRE 105

Query: 156 TEKIEPSSSAQFSESMQGKQSQPQCPPE-ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQ 215
           T K E     Q+ +       +P  PPE +DEIF+KMKE GLIPNAVAMLDGLCKDGL+Q
Sbjct: 106 TPKPE-----QYPQ-------EPLPPPEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQ 165

Query: 216 EAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILI 275
           EAMKLFGL+R+KGTIPEVV+YTAVV+ FCKA K ++A RIFRKMQNNGI+PNAFSYG+L+
Sbjct: 166 EAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLV 225

Query: 276 QGLYKSKQLEDAVSFCFEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFL 335
           QGLY    L+DAV+FC EMLESGHSPN+ TFV L+D LC+ KGV++A + I+TL QKGF 
Sbjct: 226 QGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFA 285

Query: 336 INEKDLREFLNKRAPFSPHIWELIFGKKTKE 363
           +N K ++EF++KRAPF    WE IF KK  E
Sbjct: 286 VNVKAVKEFMDKRAPFPSLAWEAIFKKKPTE 299

BLAST of Carg04123 vs. TAIR 10
Match: AT5G03560.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-29
Identity = 99/334 (29.64%), Postives = 158/334 (47.31%), Query Frame = 0

Query: 40  DLSLSPVESRCFSSNSMDDDWNFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPY-- 99
           D++ S +    FS       +  S S   SSP    +    +E +   +F+  + A +  
Sbjct: 30  DITSSAINGGEFSDFVRAFAFYSSSSSWWSSPDDLTASSKRKEKKTTERFSAVIDAVHDR 89

Query: 100 ---PEDNRNQRFNRHSEGSSSRFANEGPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTE 159
              PE    + F R    S+S F         R  S   K  +    F L+ D+    TE
Sbjct: 90  KLPPELRGRRDFVRSKRNSNSLFPWFCGGVFARQFSSETKRVNTKVNFSLSDDDSDEETE 149

Query: 160 --------KIEPSSSAQFSESMQGKQSQPQCPPEADEIFRKMKETGLIPNAVAMLDGLCK 219
                   K EP        S +    +P+ P    EIF KM+  G    AV M D L K
Sbjct: 150 TQVTEDSKKQEPPPPPYDPFSKKPAIEEPEDPKNLQEIFHKMRTEGFTNEAVKMFDALSK 209

Query: 220 DGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFCKAEKFDEAIRIFRKMQNNGISPNAFS 279
           DG   EA++LF  I++K  +P+VV +TA+V+ +  A +  E +++F +M  +G+SPNA++
Sbjct: 210 DGRTHEALELFSQIKDKNRMPDVVAHTAIVEAYANAGQAKETLKVFMRMLASGVSPNAYT 269

Query: 280 YGILIQGL-YKSKQLEDAVSFCFEMLESGHSPNLTTFVGLIDELCKEKGVDEAHTVIETL 339
           Y +LI+GL    K  +DA  +  EM+ +G SPN  T+  + +   +E   + A  +++ +
Sbjct: 270 YSVLIKGLAADGKTHKDAKKYLLEMMGNGMSPNAATYTAVFEAFVREGKEESARELLQEM 329

Query: 340 KQKGFLINEKDLREFLN-KRAPFSPHIWELIFGK 359
           K KGF+ +EK +RE L  KR      +  L+F K
Sbjct: 330 KGKGFVPDEKAVREALEYKRGQVFRTVINLLFDK 363

BLAST of Carg04123 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 8.1e-24
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 0

Query: 181 ADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVD 240
           A E+ RKM+E  +  +AV    ++DGLCKDG +  A  LF  +  KG   +++ Y  ++ 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 241 GFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHSP 300
           GFC A ++D+  ++ R M    ISPN  ++ +LI    K  +L +A     EM++ G +P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 301 NLTTFVGLIDELCKEKGVDEAHTVIETLKQKG 330
           N  T+  LID  CKE  ++EA  +++ +  KG
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

BLAST of Carg04123 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-23
Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = 0

Query: 180 EADEIFRKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVV 239
           EA+E F +M   G++P+ V    ++DG CK G I+ A K F  +  +   P+V+ YTA++
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 240 DGFCKAEKFDEAIRIFRKMQNNGISPNAFSYGILIQGLYKSKQLEDAVSFCFEMLESGHS 299
            GFC+     EA ++F +M   G+ P++ ++  LI G  K+  ++DA      M+++G S
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453

Query: 300 PNLTTFVGLIDELCKEKGVDEAHTVIETLKQKGFLIN 334
           PN+ T+  LID LCKE  +D A+ ++  + + G   N
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7011839.13.7e-204100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022952706.15.0e-20198.35pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] ... [more]
XP_023554525.11.8e-19897.80pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita... [more]
XP_022969144.19.2e-19595.88pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >X... [more]
KAG6572199.12.8e-17599.06Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Q9SZL51.5e-7557.56Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX... [more]
Q9LPX21.1e-2234.87Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
Q0WVK72.6e-2234.39Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop... [more]
Q9FNL24.4e-2236.00Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
Q6NQ839.7e-2230.46Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1GKZ02.4e-20198.35pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita moschata... [more]
A0A6J1I1Q24.4e-19595.88pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita maxima O... [more]
A0A6J1C2J33.3e-15879.40pentatricopeptide repeat-containing protein At4g38150 OS=Momordica charantia OX=... [more]
A0A1S3CFW01.3e-14980.00pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN... [more]
A0A5D3D5J51.3e-14980.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT4G38150.11.1e-7657.56Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G38150.21.1e-7657.56Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G03560.24.9e-2929.64Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G12775.18.1e-2434.87Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G05670.11.8e-2334.39Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 199..224
e-value: 5.8E-5
score: 23.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 227..276
e-value: 2.6E-16
score: 59.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 265..298
e-value: 2.6E-6
score: 25.2
coord: 199..227
e-value: 7.8E-5
score: 20.6
coord: 230..264
e-value: 6.0E-11
score: 39.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 263..297
score: 10.654441
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 193..227
score: 8.582755
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 228..262
score: 13.241308
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 298..332
score: 8.582755
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 161..345
e-value: 1.7E-36
score: 128.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..179
NoneNo IPR availablePANTHERPTHR45613:SF39PPR CONTAINING PLANT-LIKE PROTEINcoord: 11..362
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 11..362

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04123-RACarg04123-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding