Carg04081 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04081
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone-lysine n-methyltransferase
LocationCarg_Chr12: 2968398 .. 2968682 (-)
RNA-Seq ExpressionCarg04081
SyntenyCarg04081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTGTATCACCTCACTCTTATCCTGTCGGAGATCAAGAAAAGGACAAGACGGTTGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCAGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCTTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

mRNA sequence

ATGGCGGCTGTATCACCTCACTCTTATCCTGTCGGAGATCAAGAAAAGGACAAGACGGTTGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCAGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCTTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

Coding sequence (CDS)

ATGGCGGCTGTATCACCTCACTCTTATCCTGTCGGAGATCAAGAAAAGGACAAGACGGTTGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCAGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCTTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

Protein sequence

MAAVSPHSYPVGDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL
Homology
BLAST of Carg04081 vs. NCBI nr
Match: KAG6585633.1 (hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020540.1 hypothetical protein SDJN02_17225, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MAAVSPHSYPVGDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVN 60
          MAAVSPHSYPVGDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVN
Sbjct: 1  MAAVSPHSYPVGDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVN 60

Query: 61 KFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
          KFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL
Sbjct: 61 KFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 94

BLAST of Carg04081 vs. NCBI nr
Match: KAG6598407.1 (hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 72/103 (69.90%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 1   MAAVSPHSYPV-----GDQEK---DKTVADAAASPDVTRHIRLKSSHSTQV-LEKAVVLR 60
           MAA+SPH   V     G QE+   +     AA  PDVTRHI +KSS STQV LEKAVVLR
Sbjct: 1   MAAMSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLR 60

Query: 61  RIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           RIR RKRVNKFQAVVGALFSSPF DK  E RQRKWVDEPFTSL
Sbjct: 61  RIRHRKRVNKFQAVVGALFSSPFADKADETRQRKWVDEPFTSL 103

BLAST of Carg04081 vs. NCBI nr
Match: KAA0065270.1 (hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MAAVSPHSYPV-----GDQ--EKDKTVADAAASPDVTRHIRLKS--SHSTQVLEKAVVLR 60
           MAA+SP  Y V     GDQ   + +T   AA  P VTRHI +KS  SHS Q LEKAVVLR
Sbjct: 1   MAAMSPRPYSVEKKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLR 60

Query: 61  RIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           RIRQRKRVNK +A VGALFSSPF DKT E  QRKWVDEPFTSL
Sbjct: 61  RIRQRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of Carg04081 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_022598 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.7e-18
Identity = 65/113 (57.52%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MAAVSPHSYPV-----GDQEKDKTVADAAAS--------PDVTRHIRLKSS------HST 60
           MAA+SP  Y V     GDQ + +   ++AA+        P VTRHI +KSS       S 
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           Q LEKAVVLRRIRQRKRVNK +A VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of Carg04081 vs. NCBI nr
Match: KAG7029360.1 (Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 7.5e-16
Identity = 59/89 (66.29%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 1  MAAVSPHSYPV-----GDQEK---DKTVADAAASPDVTRHIRLKSSHSTQV-LEKAVVLR 60
          MAA+SPH   V     G QE+   +     AA  PDVTRHI +KSS STQV LEKAVVLR
Sbjct: 1  MAAMSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLR 60

Query: 61 RIRQRKRVNKFQAVVGALFSSPFGDKTGE 81
          RIR RKRVNKFQAVVGALFSSPF DK  E
Sbjct: 61 RIRHRKRVNKFQAVVGALFSSPFADKADE 89

BLAST of Carg04081 vs. ExPASy TrEMBL
Match: A0A5A7VDJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006120 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MAAVSPHSYPV-----GDQ--EKDKTVADAAASPDVTRHIRLKS--SHSTQVLEKAVVLR 60
           MAA+SP  Y V     GDQ   + +T   AA  P VTRHI +KS  SHS Q LEKAVVLR
Sbjct: 1   MAAMSPRPYSVEKKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLR 60

Query: 61  RIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           RIRQRKRVNK +A VGALFSSPF DKT E  QRKWVDEPFTSL
Sbjct: 61  RIRQRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of Carg04081 vs. ExPASy TrEMBL
Match: A0A0A0LNJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 65/113 (57.52%), Postives = 74/113 (65.49%), Query Frame = 0

Query: 1   MAAVSPHSYPV-----GDQEKDKTVADAAAS--------PDVTRHIRLKSS------HST 60
           MAA+SP  Y V     GDQ + +   ++AA+        P VTRHI +KSS       S 
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           Q LEKAVVLRRIRQRKRVNK +A VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of Carg04081 vs. ExPASy TrEMBL
Match: A0A7J7D397 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00807 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 10  PVGDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGAL 69
           P+ DQE      D   S  VT H+ LK +H+TQ L++ VVLRRIR RKRVNK +A + +L
Sbjct: 21  PIEDQE------DPEISNSVTTHLYLKPAHTTQTLDREVVLRRIRNRKRVNKIKAALLSL 80

Query: 70  FSSPFGDKTGEAR--QRKWVDEPFTSL 95
           F SP   +T +    +++WVD+ F +L
Sbjct: 81  FGSPISSETEKTSVDKKRWVDDAFAAL 101

BLAST of Carg04081 vs. ExPASy TrEMBL
Match: A0A2N9G0R5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGE--ARQRKW 88
           VT H+ +K +HSTQ L+K VVLRRIRQRKRVNK +A   AL SSPF  K  +    ++KW
Sbjct: 38  VTSHLYIKPTHSTQPLDKEVVLRRIRQRKRVNKVKATFQALVSSPFSAKPDKVSVHKKKW 97

Query: 89  VDEPFTSL 95
            D+ F +L
Sbjct: 98  ADDAFAAL 105

BLAST of Carg04081 vs. ExPASy TrEMBL
Match: A0A6A4LFT7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10847 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGE---ARQRK 88
           VT H+ LK +HST+ L+K VVLRR+RQRKR++K    V AL +SPF  K G+    R +K
Sbjct: 35  VTTHLYLKPTHSTETLDKEVVLRRLRQRKRMSKVGTAVKALLTSPFASKPGDKASVRHKK 94

Query: 89  WVDEPFTS 94
           WVD+ F +
Sbjct: 95  WVDDAFAA 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6585633.11.1e-43100.00hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6598407.11.2e-2469.90hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0065270.11.1e-2266.99hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa][more]
KGN62559.14.7e-1857.52hypothetical protein Csa_022598 [Cucumis sativus][more]
KAG7029360.17.5e-1666.29Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDJ55.2e-2366.99Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LNJ02.3e-1857.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1[more]
A0A7J7D3971.5e-0944.83Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00807 ... [more]
A0A2N9G0R51.9e-0954.41Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1[more]
A0A6A4LFT72.5e-0951.47Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR35324:SF4BNAA08G03750D PROTEINcoord: 18..94
NoneNo IPR availablePANTHERPTHR35324BNAA08G03750D PROTEINcoord: 18..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04081-RACarg04081-RAmRNA