Carg04055 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04055
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein RADIALIS-like 4
Location	Carg_Chr12: 2828093 .. 2828424 (+)
RNA-Seq Expression	Carg04055
Synteny	Carg04055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGGTTAATCTCTTTCTCTATTCGATGTATTTCGAAATTACTTTTTATCGTTTGAGCGTTTGA

mRNA sequence

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGCGTTTGA

Coding sequence (CDS)

ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTCCTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGCGTTTGA

Protein sequence

MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV

Homology

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: KAG7020514.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60
          MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM
Sbjct: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV 93
          LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV
Sbjct: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV 92

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: KAG6585601.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60
          MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM
Sbjct: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ 91
          LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
Sbjct: 61 LVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ 90

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_022951876.1 (protein RADIALIS-like 4, partial [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 3  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLV 62
          SSSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLV
Sbjct: 1  SSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60

Query: 63 EDVHNIEIGRIPLPNYSNSSNQYYSNEQ 91
          EDVHNIEIGRIPLPNYSNSS+QYYSNEQ
Sbjct: 61 EDVHNIEIGRIPLPNYSNSSDQYYSNEQ 88

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_023537868.1 (protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          SSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVE
Sbjct: 1  SSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 60

Query: 64 DVHNIEIGRIPLPNYSNSSNQYYSNEQ 91
          DVHNIEIGRIPLPNYSNSSNQ YSNEQ
Sbjct: 61 DVHNIEIGRIPLPNYSNSSNQCYSNEQ 87

[Close]

BLAST of Carg04055 vs. NCBI nr
Match: XP_023002559.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          SSSSSSSSSSN WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVE
Sbjct: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61

Query: 64 DVHNIEIGRIPLPNYSNSSNQYYSN 89
          DVHNIEIGRIPLPNYSNSS QYYSN
Sbjct: 62 DVHNIEIGRIPLPNYSNSSKQYYSN 86

[Close]

BLAST of Carg04055 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.6e-21
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQ 61

Query: 64 DVHNIEIGRIPLPNYSNS 82
          D+++IE G +P PNY  S
Sbjct: 62 DINSIENGHVPFPNYRTS 79

[Close]

BLAST of Carg04055 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-21
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNYSNSSNQYYSNEQSV 93
           NIE GR+PLPNY      + SN +S+
Sbjct: 62 INIETGRVPLPNYKT----FESNSRSI 84

[Close]

BLAST of Carg04055 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSS SSS+SW+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE   +PLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of Carg04055 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-20
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SSS SW+ K+NK+FE AL  YD+D+PDRW  VA AVGGK+AEEV+RHYE+L+ DV
Sbjct: 2  ASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDV 61

Query: 66 HNIEIGRIPLPNYSNSSNQY 86
          ++IE GR P PNY ++ N +
Sbjct: 62 NDIESGRYPHPNYRSNGNNH 81

[Close]

BLAST of Carg04055 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-19
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVH 66
          +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 67 NIEIGRIPLPNYSNSS 83
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

[Close]

BLAST of Carg04055 vs. ExPASy TrEMBL
Match: A0A6J1GIQ1 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454612 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 3  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLV 62
          SSSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLV
Sbjct: 1  SSSSSSSSSSSNSWSPKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLV 60

Query: 63 EDVHNIEIGRIPLPNYSNSSNQYYSNEQ 91
          EDVHNIEIGRIPLPNYSNSS+QYYSNEQ
Sbjct: 61 EDVHNIEIGRIPLPNYSNSSDQYYSNEQ 88

[Close]

BLAST of Carg04055 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          SSSSSSSSSSN WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVE
Sbjct: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVE 61

Query: 64 DVHNIEIGRIPLPNYSNSSNQYYSN 89
          DVHNIEIGRIPLPNYSNSS QYYSN
Sbjct: 62 DVHNIEIGRIPLPNYSNSSKQYYSN 86

[Close]

BLAST of Carg04055 vs. ExPASy TrEMBL
Match: A0A6J1HEM1 (protein RADIALIS-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111462781 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSSSSSS+SWS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDV
Sbjct: 2  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDV 61

Query: 66 HNIEIGRIPLPNYSNSSNQ 85
          HNIE GR+PLPNYS  S Q
Sbjct: 62 HNIETGRVPLPNYSTPSKQ 80

[Close]

BLAST of Carg04055 vs. ExPASy TrEMBL
Match: A0A6J1K580 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.9e-28
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 5  SSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVED 64
          +SSSSSSSS+ WS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVED
Sbjct: 2  TSSSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVED 61

Query: 65 VHNIEIGRIPLPNYSNSSNQYYSN 89
          VHNIE GR+PLPNYS  S    SN
Sbjct: 62 VHNIETGRVPLPNYSKPSKHCSSN 85

[Close]

BLAST of Carg04055 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.0e-28
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEM 60
          M+SS++SSSSSSS+SWS KQNK+FENALT+YDKDSPDRWQK+A AVGGKTA+EVKRHYEM
Sbjct: 1  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEM 60

Query: 61 LVEDVHNIEIGRIPLPNYSN--SSNQYYSNEQ 91
          LVEDVHNIE G++PLPNYS   S N +   EQ
Sbjct: 61 LVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQ 92

[Close]

BLAST of Carg04055 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-22
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 4  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVE 63
          +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQ 61

Query: 64 DVHNIEIGRIPLPNYSNS 82
          D+++IE G +P PNY  S
Sbjct: 62 DINSIENGHVPFPNYRTS 79

[Close]

BLAST of Carg04055 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 100.9 bits (250), Expect = 5.6e-22
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNYSNSSNQYYSNEQSV 93
           NIE GR+PLPNY      + SN +S+
Sbjct: 62 INIETGRVPLPNYKT----FESNSRSI 84

[Close]

BLAST of Carg04055 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 100.9 bits (250), Expect = 5.6e-22
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNYSNSSNQYYSNEQSV 93
           NIE GR+PLPNY      + SN +S+
Sbjct: 62 INIETGRVPLPNYKT----FESNSRSI 84

[Close]

BLAST of Carg04055 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 100.5 bits (249), Expect = 7.3e-22
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 6  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDV 65
          +SSS SSS+SW+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDL 61

Query: 66 HNIEIGRIPLPNY 79
           NIE   +PLP Y
Sbjct: 62 MNIEQDLVPLPKY 74

[Close]

BLAST of Carg04055 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-20
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVH 66
          +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV+
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVN 61

Query: 67 NIEIGRIPLPNYSNSS 83
          +IE GR P P Y N++
Sbjct: 62 DIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:

BLAST of Carg04055 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020514.1	2.5e-40	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6585601.1	2.1e-39	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022951876.1	2.6e-37	96.59	protein RADIALIS-like 4, partial [Cucurbita moschata]	[more]
XP_023537868.1	1.3e-36	96.55	protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023002559.1	2.7e-34	94.12	protein RADIALIS-like 4 [Cucurbita maxima]	[more]

BLAST of Carg04055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	4.6e-21	64.10	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	7.9e-21	59.77	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	1.0e-20	68.49	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q6NNN0	2.3e-20	60.00	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1G3C4	4.3e-19	59.21	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]

BLAST of Carg04055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GIQ1	1.3e-37	96.59	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454612 PE=4 SV=1	[more]
A0A6J1KQS6	1.3e-34	94.12	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]
A0A6J1HEM1	2.4e-28	84.81	protein RADIALIS-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111462781 PE=4 SV=1	[more]
A0A6J1K580	6.9e-28	80.95	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1	[more]
A0A1S3BBR2	9.0e-28	76.09	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]

BLAST of Carg04055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	3.3e-22	64.10	RAD-like 1	[more]
AT1G75250.1	5.6e-22	59.77	RAD-like 6	[more]
AT1G75250.2	5.6e-22	59.77	RAD-like 6	[more]
AT1G19510.1	7.3e-22	68.49	RAD-like 5	[more]
AT2G18328.1	3.1e-20	59.21	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.0E-6 score: 37.4
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.260491
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 24..62 e-value: 2.42021E-4 score: 33.703
None	No IPR available	GENE3D	1.10.10.60		coord: 6..75 e-value: 6.3E-23 score: 82.3
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 11..84
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..61 e-value: 1.1E-5 score: 25.5
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 11..84
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04055-RA	Carg04055-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0047429	nucleoside-triphosphate diphosphatase activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome