Carg04049 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04049
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein RADIALIS-like 4
Location	Carg_Chr12: 2794670 .. 2795828 (+)
RNA-Seq Expression	Carg04049
Synteny	Carg04049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAACACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAACGTGCTATCTATCTACTCCTAGGCGTCTTTTTATGTCATATGTCAAGTCTCTATCCTACTTTCATCCTCGGAAAGTCATCCAAATCTATGAGTATTTAGTTCATAGGGGAAAAGACATTCAAAATAACCTGGTTCTTACAAGAATAGATATTCAACGTTAACAGTAAAACAGACCTTCCATTAGCCTCACAAAATTGTTAAGAATCACAGATCTCCACAATGGTATAATATTGTCCACTTTGAGTATAAGCTCTCATCGCTTTACTTTGAGCTTCCCAAAATGCCTCGTACCAATGAAAATAGTATTCCTTACTTATAAACCCACGATCGTGGGACTCCCTCCCAACAATCCTCCACTCGAACAAAGTACACTATAGAGCCCTCGACAATCCTCAACAATTTCTTCGATCGAATAATAGTATACCTTTTCGTTCAATCCTTGTAGCTTTGTTTTTGGTATCATCTAAAAAGAACTTGTACCAATAGAGAAGTTTTCATTTACTTAAAAGAAGTTCTTCTAAACACTTCATGCTATTCCTATTCATGCATTCCCACAATCTCTCATGCTTTTCTAAGTTGCATGCACATGGTCCTGTATTTCTGAATTCAGACATCTACGTATTTATTCATCCCTTCTTTAACATTTGGATCTACTTCAGTACTTGGCCACAAAAACTGATTAAAAAAACTGGCAAAACTGACATGGGTGTATTAATTAAGCATCAAGTATGCCCGAGAACTCGCCTTAAACTATACCTCTGCTTCCTTGCAGATTAACTGTCCATATATTCACATTTAGAAACATTTAGCTAATGTTTCCATCGTTCTCTCTTTGAACTATTGTTGCAGGCTCATGAAAAATCTAAAGCTCCAATAA

mRNA sequence

ATGGCATCAAACACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAA

Coding sequence (CDS)

ATGGCATCAAACACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAA

Protein sequence

MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ

Homology

[Close]

BLAST of Carg04049 vs. NCBI nr
Match: XP_022951683.1 (protein RADIALIS-like 4 [Cucurbita moschata] >KAG7020508.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.8 bits (525), Expect = 8.5e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. NCBI nr
Match: XP_023538249.1 (protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. NCBI nr
Match: XP_023002562.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-49
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. NCBI nr
Match: KAG6585593.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 94
          LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Sbjct: 61 LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR 93

[Close]

BLAST of Carg04049 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 8   SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
           SS SSSSSWT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+
Sbjct: 4   SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68  IESGKVPLPKYKPIASNSIVCGDEQ---RLMKNLKLQ 102
           IE   VPLPKYK +   S   G +    RLMKN+++Q
Sbjct: 64  IEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Carg04049 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-26
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1   MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGD-EQRLMKNLKL 101
           LV DL++IE+G+VPLP YK   SNS    D + R MKNLK+
Sbjct: 61  LVEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Carg04049 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-23
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS +  S G  S SWT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSI--VCGDEQRLMKNLKLQ 102
           LV D+  IE+G VP P YK    NS      DE++ M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of Carg04049 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-22
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS++   S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LVHDLMHIESGKVPLPKYKPI--ASNSIVCGDEQRLMKNLKLQ 102
           LV D+  IE+G VP P Y+     +N  +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Carg04049 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SSS+SWT K+NK FE ALA Y +DTPDRW  VARAVGGK+AEEV+RHY++
Sbjct: 1  MASN----SMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYEL 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASN 85
          L+ D+  IESG+ P P Y+   +N
Sbjct: 61 LIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Carg04049 vs. ExPASy TrEMBL
Match: A0A6J1GIE7 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. ExPASy TrEMBL
Match: A0A6J1KJV3 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496371 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           LV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS++F+SSG+SSSSWT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 102
           L+ DLMHIESGKVPLP YKPIA N  +  DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Carg04049 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-28
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 8   SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMH 67
           SS SSSSSWT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+
Sbjct: 4   SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMN 63

Query: 68  IESGKVPLPKYKPIASNSIVCGDEQ---RLMKNLKLQ 102
           IE   VPLPKYK +   S   G +    RLMKN+++Q
Sbjct: 64  IEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Carg04049 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1   MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGD-EQRLMKNLKL 101
           LV DL++IE+G+VPLP YK   SNS    D + R MKNLK+
Sbjct: 61  LVEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Carg04049 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-25
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDI
Sbjct: 1  MASN----SRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDI 60

Query: 61 LVHDLMHIESGKVPLPKYKPIASNS 86
          LV DL++IE+G+VPLP YK   SNS
Sbjct: 61 LVEDLINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Carg04049 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-24
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS +  S G  S SWT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LVHDLMHIESGKVPLPKYKPIASNSI--VCGDEQRLMKNLKLQ 102
           LV D+  IE+G VP P YK    NS      DE++ M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of Carg04049 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-23
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS++   S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LVHDLMHIESGKVPLPKYKPI--ASNSIVCGDEQRLMKNLKLQ 102
           LV D+  IE+G VP P Y+     +N  +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

The following BLAST results are available for this feature:

BLAST of Carg04049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951683.1	8.5e-50	100.00	protein RADIALIS-like 4 [Cucurbita moschata] >KAG7020508.1 Protein RADIALIS-like...	[more]
XP_023538249.1	1.9e-49	99.01	protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]	[more]
XP_023002562.1	5.5e-49	98.02	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
KAG6585593.1	1.7e-45	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961874.1	2.9e-42	87.13	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of Carg04049 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	1.1e-26	65.98	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q1A173	4.0e-26	64.36	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q9SIJ5	3.2e-23	57.28	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	2.1e-22	54.37	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	8.7e-21	60.71	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of Carg04049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GIE7	4.1e-50	100.00	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111454426 PE=4 SV=1	[more]
A0A6J1KJV3	2.7e-49	98.02	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496371 PE=4 SV=1	[more]
A0A6J1K2Q1	1.4e-42	87.13	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	1.4e-42	87.13	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]
A0A0A0LPB1	1.9e-39	83.17	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]

BLAST of Carg04049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	7.5e-28	65.98	RAD-like 5	[more]
AT1G75250.2	2.8e-27	64.36	RAD-like 6	[more]
AT1G75250.1	4.5e-25	68.24	RAD-like 6	[more]
AT2G21650.1	2.3e-24	57.28	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.5e-23	54.37	RAD-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.7E-8 score: 43.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.388227
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 3.09659E-7 score: 41.407
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 3.9E-7 score: 30.2
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 4.9E-24 score: 85.9
None	No IPR available	PANTHER	PTHR43952:SF32	PROTEIN RADIALIS-LIKE 5	coord: 14..101
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 14..101
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 11..58 score: 9.075912
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04049-RA	Carg04049-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity