Carg04023 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04023
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	thioredoxin H1-like
Location	Carg_Chr12: 2649762 .. 2651118 (+)
RNA-Seq Expression	Carg04023
Synteny	Carg04023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGCTTCGTTTTCAAATACAGTGAGACCTTTGCAGGATACACACTCGTTTTTCTTTGAAGCAATGGCTGTTGAAGGTCAAGTGATTCCACTTCGCGATGCTAAAGAATTCGATGTGATAATCGATAAAGAGAAGGAATCTGGAAAACTAGTATGATTTTTTATTTCTTTTCCTCTCCATTTCTGCTTTCCAATTTGTGATTTCCTGATGTTCTTGTCGTTTCAAACGATTTTTGTTGGATTTGTGTTGTTATTGTTGGATATTGTTCATGATTTGGAGGAAATCGTGATTGATTCGTTAGGATTTGTGATATTGACTTGTATTTGTGTCTAGGTTTCTTTTGTTTAATCTAATTTATTGAGTCCTGGCTAGCTATGTTTGATTGCCTCGGATTTTATGATTTCTAATCTTCAATTCTTCTGTGTTACTCGTTTCGTGTCATTGAATTTGATGATTCCATCCTCCTTTGACAGTAGTAGTACTTCACTGGATTAAATATAGTATCACCTCTATAGTTTTGGGGGTTCTTTTTGTTTCTGATGTATATAAAATCTTCTTTGATAGATTGTGATCGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTATCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGTCAATGTCACTTTCTTGAAAGTGGACGTCGATAATGTCAAGGTAAAGCAATTTGAGCCTTTTCAACTCTTCCAAACTTTTTATATTGTTGATGCAGTGGAATTGAACTGTTCTGTTTCTTTGCAGGAAATTGCTGAGAGGTTCGAGGTGAATGCGATGCCGACCTTTGTTTTCCTGAAAGGAGGAAAAGAAGTTCACAGGATTGTTGGTGCCGACAAGGTGGAGCTAGGGGTTAAAGTACTGGAGTTAAGCGCTGCACCTGCTACTTCTGCTGCTTAGATGGTCAGCTTTGATGATCATTTTCCCTCTTAATATTATCATTATGTTGTAATAACGATTCTGGTTTTGGGGTTTGTTGTTCTTGTGGATTCCATGACAGTATCTCTCTGTGATGCTTACTTGTGTTAAGAATGTTTGTAAACGATATATGTAGAATAAGATTTAATGTTTCATAATGTATCTCTGCTCATCAAGCTTTTGAATTCAGTGATTGTTGCCTCAATGTTCACAGATTACTTAAGAACAGCTTACTTTTTCACCTTTTTTCTCTCATGTTTAGAAATGTCTTGATTCTGAAAAGGGTTTTAAGTTTTATGATTGGTTGAATTTGTCAACTTTGTCAATTTTGTTCTTGGCTCTCCAATGTTGTTCTTTATGCTTACTTAGGTTGGGTAAGGATTTTGGGGCCCTTTGTTCATATGGGAATGAGAAT

mRNA sequence

ATCGCTTCGTTTTCAAATACAGTGAGACCTTTGCAGGATACACACTCGTTTTTCTTTGAAGCAATGGCTGTTGAAGGTCAAGTGATTCCACTTCGCGATGCTAAAGAATTCGATGTGATAATCGATAAAGAGAAGGAATCTGGAAAACTAATTGTGATCGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTATCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGTCAATGTCACTTTCTTGAAAGTGGACGTCGATAATGTCAAGGAAATTGCTGAGAGGTTCGAGGTGAATGCGATGCCGACCTTTGTTTTCCTGAAAGGAGGAAAAGAAGTTCACAGGATTGTTGGTGCCGACAAGGTGGAGCTAGGGGTTAAAGTACTGGAGTTAAGCGCTGCACCTGCTACTTCTGCTGCTTAGATGGTCAGCTTTGATGATCATTTTCCCTCTTAATATTATCATTATGTTGTAATAACGATTCTGGTTTTGGGGTTTGTTGTTCTTGTGGATTCCATGACAGTATCTCTCTGTGATGCTTACTTGTGTTAAGAATGTTTGTAAACGATATATGTAGAATAAGATTTAATGTTTCATAATGTATCTCTGCTCATCAAGCTTTTGAATTCAGTGATTGTTGCCTCAATGTTCACAGATTACTTAAGAACAGCTTACTTTTTCACCTTTTTTCTCTCATGTTTAGAAATGTCTTGATTCTGAAAAGGGTTTTAAGTTTTATGATTGGTTGAATTTGTCAACTTTGTCAATTTTGTTCTTGGCTCTCCAATGTTGTTCTTTATGCTTACTTAGGTTGGGTAAGGATTTTGGGGCCCTTTGTTCATATGGGAATGAGAAT

Coding sequence (CDS)

ATGGCTGTTGAAGGTCAAGTGATTCCACTTCGCGATGCTAAAGAATTCGATGTGATAATCGATAAAGAGAAGGAATCTGGAAAACTAATTGTGATCGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTATCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGTCAATGTCACTTTCTTGAAAGTGGACGTCGATAATGTCAAGGAAATTGCTGAGAGGTTCGAGGTGAATGCGATGCCGACCTTTGTTTTCCTGAAAGGAGGAAAAGAAGTTCACAGGATTGTTGGTGCCGACAAGGTGGAGCTAGGGGTTAAAGTACTGGAGTTAAGCGCTGCACCTGCTACTTCTGCTGCTTAG

Protein sequence

MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTFLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA

Homology

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BLAST of Carg04023 vs. NCBI nr
Match: XP_022951329.1 (thioredoxin H1-like [Cucurbita moschata] >KAG7020482.1 Thioredoxin H-type [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT
Sbjct: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA
Sbjct: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120

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BLAST of Carg04023 vs. NCBI nr
Match: KAG6585568.1 (putative cysteine protease RD21C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT
Sbjct: 440 MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 499

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA
Sbjct: 500 FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 559

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BLAST of Carg04023 vs. NCBI nr
Match: XP_023536799.1 (thioredoxin H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MAVEGQVI LRDAKEFD I+DKEKESGKLIVIDFTASWCPPCR IAPVFAELAKAHVNVT
Sbjct: 1   MAVEGQVISLRDAKEFDSIVDKEKESGKLIVIDFTASWCPPCRFIAPVFAELAKAHVNVT 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVDNVKEIAE+FEV AMPTFVFLKGG EVHRIVGADKVELGVKVLELSAAPATSAA
Sbjct: 61  FLKVDVDNVKEIAEKFEVTAMPTFVFLKGGNEVHRIVGADKVELGVKVLELSAAPATSAA 120

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BLAST of Carg04023 vs. NCBI nr
Match: XP_023002552.1 (thioredoxin H1-like [Cucurbita maxima] >BAC21264.1 thioredoxin h [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MAVEGQVIPLRDA+EFD IIDKEKESG+LIVIDFTASWCPPCR IAPVFAELAKAHV+VT
Sbjct: 1   MAVEGQVIPLRDAEEFDAIIDKEKESGRLIVIDFTASWCPPCRFIAPVFAELAKAHVHVT 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVDNVKEIA+RFEV AMPTFVFLKGG EVHRIVGADKVELGVKVLELSAAPAT A+
Sbjct: 61  FLKVDVDNVKEIAKRFEVTAMPTFVFLKGGNEVHRIVGADKVELGVKVLELSAAPATCAS 120

[Close]

BLAST of Carg04023 vs. NCBI nr
Match: XP_022962605.1 (thioredoxin H5-like [Cucurbita moschata] >KAG6598472.1 Thioredoxin H5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-43
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EGQVI +R  +EFD ++ +  E+GKLIV+DFTASWCPPCR IAPVFAE+AKAHVNV 
Sbjct: 1   MAAEGQVIVVRKVEEFDALVKQGIEAGKLIVVDFTASWCPPCRFIAPVFAEMAKAHVNVV 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVD++KEIA++FEV AMPTFVFLKGG EVHRIVGADKVELG KVLEL A  ATS+A
Sbjct: 61  FLKVDVDDLKEIAQKFEVTAMPTFVFLKGGAEVHRIVGADKVELGKKVLELGAPAATSSA 120

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BLAST of Carg04023 vs. ExPASy Swiss-Prot
Match: Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 2   AVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTF 61
           A EG VI   +  EFD  + K KE+GK+++IDFTASWC PCR IAPVFAE AK      F
Sbjct: 3   AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVF 62

Query: 62  LKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 121
           LKVDVD +KE+AE++ V AMPTF+F+K G E  ++VGA K +L   +++   A A SA+
Sbjct: 63  LKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASAS 121

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BLAST of Carg04023 vs. ExPASy Swiss-Prot
Match: A2YIW7 (Thioredoxin H-type OS=Oryza sativa subsp. indica OX=39946 GN=TRXH PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 2   AVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTF 61
           A EG VI   +  EFD  + K KE+GK+++IDFTASWC PCR IAPVFAE AK      F
Sbjct: 3   AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVF 62

Query: 62  LKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 121
           LKVDVD +KE+AE++ V AMPTF+F+K G E  ++VGA K +L   +++   A A SA+
Sbjct: 63  LKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASAS 121

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BLAST of Carg04023 vs. ExPASy Swiss-Prot
Match: Q39241 (Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-27
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EG+VI     + ++  +    ES KLIVIDFTASWCPPCR IAPVFAE+AK   NV 
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLE 111
           F K+DVD ++ +A+ F+V AMPTFVF+K G  + R+VGA K E+  K+++
Sbjct: 61  FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMK 110

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BLAST of Carg04023 vs. ExPASy Swiss-Prot
Match: Q96419 (Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA E QVI     +E++    K K+SGKLIVIDFTASWC PCR+I P  +ELAK   +V 
Sbjct: 1   MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVA 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKV 109
           F KVDVD++K++AE ++V AMP+FV LK G+EV RIVGA K EL  K+
Sbjct: 61  FFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108

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BLAST of Carg04023 vs. ExPASy Swiss-Prot
Match: P68177 (Thioredoxin H-type 1 OS=Brassica napus OX=3708 GN=THL-1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.3e-27
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 5   GQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTFLKV 64
           G+VI     ++++  +   KES KLIVIDFTA WCPPCR IAP+F ELAK H++V F KV
Sbjct: 11  GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKV 70

Query: 65  DVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPA 117
           DVD +  +A+ F+V AMPTFV++KG +++ ++VGA K E+  K+L+ S   A
Sbjct: 71  DVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAA 122

[Close]

BLAST of Carg04023 vs. ExPASy TrEMBL
Match: A0A6J1GID1 (thioredoxin H1-like OS=Cucurbita moschata OX=3662 GN=LOC111454194 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.6e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT
Sbjct: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA
Sbjct: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120

[Close]

BLAST of Carg04023 vs. ExPASy TrEMBL
Match: Q8H9E2 (Thioredoxin h OS=Cucurbita maxima OX=3661 GN=LOC111496364 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.3e-54
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MAVEGQVIPLRDA+EFD IIDKEKESG+LIVIDFTASWCPPCR IAPVFAELAKAHV+VT
Sbjct: 1   MAVEGQVIPLRDAEEFDAIIDKEKESGRLIVIDFTASWCPPCRFIAPVFAELAKAHVHVT 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVDNVKEIA+RFEV AMPTFVFLKGG EVHRIVGADKVELGVKVLELSAAPAT A+
Sbjct: 61  FLKVDVDNVKEIAKRFEVTAMPTFVFLKGGNEVHRIVGADKVELGVKVLELSAAPATCAS 120

[Close]

BLAST of Carg04023 vs. ExPASy TrEMBL
Match: A0A6J1HFK3 (thioredoxin H5-like OS=Cucurbita moschata OX=3662 GN=LOC111463007 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EGQVI +R  +EFD ++ +  E+GKLIV+DFTASWCPPCR IAPVFAE+AKAHVNV 
Sbjct: 1   MAAEGQVIVVRKVEEFDALVKQGIEAGKLIVVDFTASWCPPCRFIAPVFAEMAKAHVNVV 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVD++KEIA++FEV AMPTFVFLKGG EVHRIVGADKVELG KVLEL A  ATS+A
Sbjct: 61  FLKVDVDDLKEIAQKFEVTAMPTFVFLKGGAEVHRIVGADKVELGKKVLELGAPAATSSA 120

[Close]

BLAST of Carg04023 vs. ExPASy TrEMBL
Match: A0A6J1KB35 (thioredoxin H5-like OS=Cucurbita maxima OX=3661 GN=LOC111492267 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.4e-42
Identity = 88/120 (73.33%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EGQ I +R   EFD ++ +  E+GKLIV+DFTASWCPPCR IAPVFAE+AKAH NV 
Sbjct: 26  MAAEGQAIVVRKVDEFDALVKQGSEAGKLIVVDFTASWCPPCRFIAPVFAEMAKAHSNVV 85

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSAAPATSAA 120
           FLKVDVD++KEIA++FEV AMPTFVFLKGG EV+RIVGADKVELG KVLEL A  ATS+A
Sbjct: 86  FLKVDVDDLKEIAQKFEVTAMPTFVFLKGGAEVYRIVGADKVELGKKVLELGAPAATSSA 145

[Close]

BLAST of Carg04023 vs. ExPASy TrEMBL
Match: A0A6J1CST8 (thioredoxin H-type 1-like OS=Momordica charantia OX=3673 GN=LOC111013893 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.6e-38
Identity = 88/123 (71.54%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EGQVI + + + FD ++ K  ESGKLIV+DFTASWCPPCR IAP+FAELAKAH+ V 
Sbjct: 1   MAEEGQVIGVHNVEAFDDLLKKGTESGKLIVVDFTASWCPPCRFIAPIFAELAKAHIGVI 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEV--HRIVGADKVELGVKVLELSA-APAT 120
           FLKVDVD VKE++E+FEV AMPTFVFLK G EV   RIVGADKVELG +VL LSA A AT
Sbjct: 61  FLKVDVDEVKEVSEKFEVTAMPTFVFLKEGAEVKNSRIVGADKVELGKRVLALSAPAAAT 120

[Close]

BLAST of Carg04023 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EG+VI     + ++  +    ES KLIVIDFTASWCPPCR IAPVFAE+AK   NV 
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLE 111
           F K+DVD ++ +A+ F+V AMPTFVF+K G  + R+VGA K E+  K+++
Sbjct: 61  FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMK 110

[Close]

BLAST of Carg04023 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-28
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 2   AVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHV-NVT 61
           A EGQVI       + V +DK KES KLIVIDFTASWCPPCR+IAP+F +LAK  + +  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLE 111
           F KVDVD ++ +A+ F V AMPTFVF+K G+ V ++VGA+K +L  K+++
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVK 112

[Close]

BLAST of Carg04023 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-28
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MAVEGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVT 60
           MA EG+VI     +++   +    ES KLIVIDFTA+WCPPCR IAPVFA+LAK H++V 
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVV 60

Query: 61  FLKVDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVEL 105
           F KVDVD +  +AE F+V AMPTF+F+K G+    +VGA K E+
Sbjct: 61  FFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEI 104

[Close]

BLAST of Carg04023 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 4   EGQVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTFLK 63
           EGQVI     + ++  + K  ES  L+V+DFTASWC PCR IAP FA+LAK   NV FLK
Sbjct: 5   EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLK 64

Query: 64  VDVDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVEL 105
           VD D +K +A  + + AMPTF+FLK GK + ++VGA K EL
Sbjct: 65  VDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105

[Close]

BLAST of Carg04023 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 6   QVIPLRDAKEFDVIIDKEKESGKLIVIDFTASWCPPCRIIAPVFAELAKAHVNVTFLKVD 65
           +V+    +  + +  ++ KES KL+V+DF+ASWC PCR+I P    +A    +V F+K+D
Sbjct: 26  RVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLD 85

Query: 66  VDNVKEIAERFEVNAMPTFVFLKGGKEVHRIVGADKVELGVKVLELSA 114
           VD + ++A+ F V AMPTFV +K GKE+ RI+GA K EL  KV +L A
Sbjct: 86  VDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLRA 133

The following BLAST results are available for this feature:

BLAST of Carg04023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951329.1	1.6e-58	100.00	thioredoxin H1-like [Cucurbita moschata] >KAG7020482.1 Thioredoxin H-type [Cucur...	[more]
KAG6585568.1	1.6e-58	100.00	putative cysteine protease RD21C, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023536799.1	1.0e-54	94.17	thioredoxin H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002552.1	1.5e-53	91.67	thioredoxin H1-like [Cucurbita maxima] >BAC21264.1 thioredoxin h [Cucurbita maxi...	[more]
XP_022962605.1	2.4e-43	75.83	thioredoxin H5-like [Cucurbita moschata] >KAG6598472.1 Thioredoxin H5, partial [...	[more]

BLAST of Carg04023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0D840	1.0e-28	52.94	Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1	[more]
A2YIW7	1.0e-28	52.94	Thioredoxin H-type OS=Oryza sativa subsp. indica OX=39946 GN=TRXH PE=1 SV=1	[more]
Q39241	1.5e-27	53.64	Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1	[more]
Q96419	1.9e-27	57.41	Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1	[more]
P68177	4.3e-27	50.89	Thioredoxin H-type 1 OS=Brassica napus OX=3708 GN=THL-1 PE=2 SV=1	[more]

BLAST of Carg04023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GID1	7.6e-59	100.00	thioredoxin H1-like OS=Cucurbita moschata OX=3662 GN=LOC111454194 PE=4 SV=1	[more]
Q8H9E2	7.3e-54	91.67	Thioredoxin h OS=Cucurbita maxima OX=3661 GN=LOC111496364 PE=2 SV=1	[more]
A0A6J1HFK3	1.2e-43	75.83	thioredoxin H5-like OS=Cucurbita moschata OX=3662 GN=LOC111463007 PE=4 SV=1	[more]
A0A6J1KB35	6.4e-42	73.33	thioredoxin H5-like OS=Cucurbita maxima OX=3661 GN=LOC111492267 PE=4 SV=1	[more]
A0A6J1CST8	9.6e-38	71.54	thioredoxin H-type 1-like OS=Momordica charantia OX=3673 GN=LOC111013893 PE=4 SV...	[more]

BLAST of Carg04023 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45145.1	1.1e-28	53.64	thioredoxin H-type 5	[more]
AT1G19730.1	6.8e-28	54.55	Thioredoxin superfamily protein	[more]
AT5G42980.1	6.8e-28	54.81	thioredoxin 3	[more]
AT3G51030.1	9.2e-25	53.47	thioredoxin H-type 1	[more]
AT5G39950.1	2.5e-22	45.37	thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 38..47 score: 58.56 coord: 30..38 score: 45.86 coord: 77..88 score: 36.62
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..116 e-value: 5.8E-37 score: 128.3
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..114
None	No IPR available	PANTHER	PTHR10438:SF399	THIOREDOXIN	coord: 1..114
None	No IPR available	CDD	cd02947	TRX_family	coord: 21..103 e-value: 1.11636E-35 score: 115.733
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 13..101 e-value: 5.0E-26 score: 90.7
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..114 score: 14.308677
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 31..49
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04023-RA	Carg04023-RA	mRNA