Carg03941 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03941
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionStress induced protein
LocationCarg_Chr12: 2113330 .. 2113812 (+)
RNA-Seq ExpressionCarg03941
SyntenyCarg03941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGATTGATGAAACCATTCGGTTGGAGGAGAGAGGATCTAATCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGATCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTATAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGACGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAGAAGCGAGATATGA

mRNA sequence

ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGATTGATGAAACCATTCGGTTGGAGGAGAGAGGATCTAATCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGATCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTATAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGACGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAGAAGCGAGATATGA

Coding sequence (CDS)

ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGATTGATGAAACCATTCGGTTGGAGGAGAGAGGATCTAATCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGATCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTATAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGACGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAGAAGCGAGATATGA

Protein sequence

MASSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMRSEI
Homology
BLAST of Carg03941 vs. NCBI nr
Match: KAG7020402.1 (hypothetical protein SDJN02_17086, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.1 bits (788), Expect = 4.3e-80
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MASSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVR 60
           MASSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVR
Sbjct: 1   MASSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVR 60

Query: 61  CRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPR 120
           CRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPR
Sbjct: 61  CRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPR 120

Query: 121 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMRSEI 161
           SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMRSEI
Sbjct: 121 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMRSEI 160

BLAST of Carg03941 vs. NCBI nr
Match: XP_023537514.1 (uncharacterized protein LOC111798530 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 7.9e-74
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 0

Query: 6   SSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRYVS 65
           +SSSSSSAIDET RLEERGSNRIEEESDLEVGVSYSS GGFFGFGSRLSR+SSVRCRYVS
Sbjct: 2   ASSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSCGGFFGFGSRLSRSSSVRCRYVS 61

Query: 66  LQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALN 125
           LQT QNDEEVNQSWMMKKVKRFEEI+KAMARSKWRSFINGIVNKRRSVRFQYDPRSYALN
Sbjct: 62  LQTQQNDEEVNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALN 121

Query: 126 FDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           FDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM RSEI
Sbjct: 122 FDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 157

BLAST of Carg03941 vs. NCBI nr
Match: KAG6585486.1 (hypothetical protein SDJN03_18219, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0

Query: 2   ASSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRC 61
           +SSSSSSSSSSAIDET RLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRC
Sbjct: 4   SSSSSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRC 63

Query: 62  RYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRS 121
           RYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRS
Sbjct: 64  RYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRS 123

Query: 122 YALNFDHGIGEDGGGGGRHGYSPPSEPPMG 152
           YALNFDHGIGEDGGGGGRHGYSPPSEPPMG
Sbjct: 124 YALNFDHGIGEDGGGGGRHGYSPPSEPPMG 153

BLAST of Carg03941 vs. NCBI nr
Match: XP_023002532.1 (uncharacterized protein LOC111496346 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 3.4e-69
Identity = 147/159 (92.45%), Postives = 150/159 (94.34%), Query Frame = 0

Query: 4   SSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRY 63
           +SSSSSSSSAIDET RLEERGSNRIEEESDLEVGVSYSSSGGFF FGS LSR+SSVRCRY
Sbjct: 2   ASSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFEFGSWLSRSSSVRCRY 61

Query: 64  VSLQTP-QNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSY 123
           VSLQ   QNDEEVNQSWMMKKVKRFEEII+AMARSKWRSFINGIVNKRRSVRFQYDPRSY
Sbjct: 62  VSLQAQRQNDEEVNQSWMMKKVKRFEEIIQAMARSKWRSFINGIVNKRRSVRFQYDPRSY 121

Query: 124 ALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           ALNFDHGIGEDG GGGRHGYSPPSE PMGLGIRM RSEI
Sbjct: 122 ALNFDHGIGEDGSGGGRHGYSPPSESPMGLGIRMNRSEI 160

BLAST of Carg03941 vs. NCBI nr
Match: XP_022131993.1 (uncharacterized protein LOC111004972 [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-43
Identity = 107/161 (66.46%), Postives = 131/161 (81.37%), Query Frame = 0

Query: 3   SSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGV-SYSSSGGFFGFGSRLSRNS-SVR 62
           +S SSS+SSS+IDET+R     ++RIEE+ D EVGV SYSS G FFGFGSR +R+S  VR
Sbjct: 2   ASYSSSTSSSSIDETLR-----TDRIEEDDDREVGVSSYSSCGCFFGFGSRQARSSDGVR 61

Query: 63  CRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPR 122
           CRY+ LQ   ++++V QSWMMKKVKRF+EIIKA+A  KWRSFI+GI++K+RSVRFQYDPR
Sbjct: 62  CRYLPLQ--PHEDQVKQSWMMKKVKRFKEIIKAVAGRKWRSFISGIISKKRSVRFQYDPR 121

Query: 123 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           SYALNFD G GEDGGG GRHG+  PS  P+GLGI M RS++
Sbjct: 122 SYALNFDEGSGEDGGGSGRHGFRAPSATPIGLGIGMNRSQV 155

BLAST of Carg03941 vs. ExPASy TrEMBL
Match: A0A6J1KJS5 (uncharacterized protein LOC111496346 OS=Cucurbita maxima OX=3661 GN=LOC111496346 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 147/159 (92.45%), Postives = 150/159 (94.34%), Query Frame = 0

Query: 4   SSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGSRLSRNSSVRCRY 63
           +SSSSSSSSAIDET RLEERGSNRIEEESDLEVGVSYSSSGGFF FGS LSR+SSVRCRY
Sbjct: 2   ASSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFEFGSWLSRSSSVRCRY 61

Query: 64  VSLQTP-QNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRSY 123
           VSLQ   QNDEEVNQSWMMKKVKRFEEII+AMARSKWRSFINGIVNKRRSVRFQYDPRSY
Sbjct: 62  VSLQAQRQNDEEVNQSWMMKKVKRFEEIIQAMARSKWRSFINGIVNKRRSVRFQYDPRSY 121

Query: 124 ALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           ALNFDHGIGEDG GGGRHGYSPPSE PMGLGIRM RSEI
Sbjct: 122 ALNFDHGIGEDGSGGGRHGYSPPSESPMGLGIRMNRSEI 160

BLAST of Carg03941 vs. ExPASy TrEMBL
Match: A0A6J1BV09 (uncharacterized protein LOC111004972 OS=Momordica charantia OX=3673 GN=LOC111004972 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 7.0e-44
Identity = 107/161 (66.46%), Postives = 131/161 (81.37%), Query Frame = 0

Query: 3   SSSSSSSSSSAIDETIRLEERGSNRIEEESDLEVGV-SYSSSGGFFGFGSRLSRNS-SVR 62
           +S SSS+SSS+IDET+R     ++RIEE+ D EVGV SYSS G FFGFGSR +R+S  VR
Sbjct: 2   ASYSSSTSSSSIDETLR-----TDRIEEDDDREVGVSSYSSCGCFFGFGSRQARSSDGVR 61

Query: 63  CRYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPR 122
           CRY+ LQ   ++++V QSWMMKKVKRF+EIIKA+A  KWRSFI+GI++K+RSVRFQYDPR
Sbjct: 62  CRYLPLQ--PHEDQVKQSWMMKKVKRFKEIIKAVAGRKWRSFISGIISKKRSVRFQYDPR 121

Query: 123 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM-RSEI 161
           SYALNFD G GEDGGG GRHG+  PS  P+GLGI M RS++
Sbjct: 122 SYALNFDEGSGEDGGGSGRHGFRAPSATPIGLGIGMNRSQV 155

BLAST of Carg03941 vs. ExPASy TrEMBL
Match: A0A6J1K5B0 (uncharacterized protein LOC111492425 OS=Cucurbita maxima OX=3661 GN=LOC111492425 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.3e-42
Identity = 103/150 (68.67%), Postives = 118/150 (78.67%), Query Frame = 0

Query: 8   SSSSSAIDETIRLEE-RGSNRIEEESDL-----EVGVSYSSSGGFFGFGSRLSRNSSVRC 67
           +SS++  DE  R EE R  +RIEE +D      EVGVSYSS G FFGFGSRLSR+SSVRC
Sbjct: 2   ASSATIEDEISRSEEIRAPDRIEEGNDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSSVRC 61

Query: 68  RYVSLQTPQNDEEVNQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRFQYDPRS 127
           RY+ L   + +EEV QSWMMKKVKRF++IIKAMA  KWRSFINGIVNKRRSVRFQYDPRS
Sbjct: 62  RYLLL---RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYDPRS 121

Query: 128 YALNFDHGIGEDGGGGGRHGYSPPSEPPMG 152
           YALNFD G+GE+ GGGGRHG+  P   P+G
Sbjct: 122 YALNFDEGMGEEEGGGGRHGFRQPFASPIG 148

BLAST of Carg03941 vs. ExPASy TrEMBL
Match: A0A5A7VG87 (Stress induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002220 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 104/161 (64.60%), Postives = 115/161 (71.43%), Query Frame = 0

Query: 1   MASSSSSSSSSSAIDETIRLEERGSNRIEEESDL---EV-GVSYSSSGGFFGFGSRLSRN 60
           MASSSSSSSSSSAID T+R E+   +RIEE  DL   EV G SYSS G FFGFGSRLSR 
Sbjct: 1   MASSSSSSSSSSAIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR- 60

Query: 61  SSVRCRYVSLQTPQNDEEV-NQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRF 120
             VR  Y+ LQ+ +  EEV  QSWMM+KVKR  EIIKAMA  KWRS INGI+NKRRSVRF
Sbjct: 61  --VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRF 120

Query: 121 QYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM 157
           QYDPRSYALNFD G+ E+G           S  P+GLGI M
Sbjct: 121 QYDPRSYALNFDEGMEEEG---------RRSLQPIGLGIGM 146

BLAST of Carg03941 vs. ExPASy TrEMBL
Match: A0A1S3BC68 (uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 104/161 (64.60%), Postives = 115/161 (71.43%), Query Frame = 0

Query: 1   MASSSSSSSSSSAIDETIRLEERGSNRIEEESDL---EV-GVSYSSSGGFFGFGSRLSRN 60
           MASSSSSSSSSSAID T+R E+   +RIEE  DL   EV G SYSS G FFGFGSRLSR 
Sbjct: 1   MASSSSSSSSSSAIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR- 60

Query: 61  SSVRCRYVSLQTPQNDEEV-NQSWMMKKVKRFEEIIKAMARSKWRSFINGIVNKRRSVRF 120
             VR  Y+ LQ+ +  EEV  QSWMM+KVKR  EIIKAMA  KWRS INGI+NKRRSVRF
Sbjct: 61  --VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRF 120

Query: 121 QYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRM 157
           QYDPRSYALNFD G+ E+G           S  P+GLGI M
Sbjct: 121 QYDPRSYALNFDEGMEEEG---------RRSLQPIGLGIGM 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7020402.14.3e-80100.00hypothetical protein SDJN02_17086, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023537514.17.9e-7495.51uncharacterized protein LOC111798530 [Cucurbita pepo subsp. pepo][more]
KAG6585486.11.8e-7398.67hypothetical protein SDJN03_18219, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023002532.13.4e-6992.45uncharacterized protein LOC111496346 [Cucurbita maxima][more]
XP_022131993.11.4e-4366.46uncharacterized protein LOC111004972 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KJS51.7e-6992.45uncharacterized protein LOC111496346 OS=Cucurbita maxima OX=3661 GN=LOC111496346... [more]
A0A6J1BV097.0e-4466.46uncharacterized protein LOC111004972 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1K5B02.3e-4268.67uncharacterized protein LOC111492425 OS=Cucurbita maxima OX=3661 GN=LOC111492425... [more]
A0A5A7VG871.3e-3464.60Stress induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8... [more]
A0A1S3BC681.3e-3464.60uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..160
NoneNo IPR availablePANTHERPTHR33168:SF46NHL DOMAIN PROTEINcoord: 38..134
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 38..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03941-RACarg03941-RAmRNA