Carg03931 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03931
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 2074958 .. 2075578 (-)
RNA-Seq ExpressionCarg03931
SyntenyCarg03931
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACCAAACTTCAGGATGGGATGACTTGAAACATAAGTATCGTTATAGACATAAAACATATGTACCTCGTTTAAAATATTTTAATTTTTAAAAGTTACATTAGTACCCTTAATACTATAGTTCATATTTATAAGCAAGTCGTCTATTTTCAACTCTACACTATCTTAATTTTGACACGCTCACTCACGACAGGTCTTGAAAAAGCTCGATCTAAAAAAAACATTGGGTTTGTTTGTCCCGAATTATCCTTAAAAAGACCAAAAAAAAAAAAAAAAAAAAAAAAAAACATAATTTTGTGTATATATTTTCATCAATCTTTAAAGATGACGTCGCTGGATATGTTCATCAACGGCTGGAGCGTATCGGCGGAGAATTTCCTAGCAAAGAGGAACGTATGCCGGCGGTAATGTTTAGCGGCGGAGGAAGACGACGAACTACGGCGGCCGGAGGTTTTAGTTCTCGTTCTGATTCTCATTTCAATGCCGCCGGCGCCGTCGCCGTCGCCGTATCTGAGGCGGGACATTCTCAGAGAACGTATGAGATTGGGTGTGACGTCAGATTTGTCGTACGTGCGAGGGTGGCCATCGAAACTCCCATTCCAGTCCACGTGTGTTAG

mRNA sequence

ATGGTGGACCAAACTTCAGGATGGGATGACTTGAAACATAAGTATCATGACGTCGCTGGATATGTTCATCAACGGCTGGAGCGTATCGGCGGAGAATTTCCTAGCAAAGAGGAACGTATGCCGGCGGTAATGTTTAGCGGCGGAGGAAGACGACGAACTACGGCGGCCGGAGGTTTTAGTTCTCGTTCTGATTCTCATTTCAATGCCGCCGGCGCCGTCGCCGTCGCCGTATCTGAGGCGGGACATTCTCAGAGAACGTATGAGATTGGGTGTGACGTCAGATTTGTCGTACGTGCGAGGGTGGCCATCGAAACTCCCATTCCAGTCCACGTGTGTTAG

Coding sequence (CDS)

ATGGTGGACCAAACTTCAGGATGGGATGACTTGAAACATAAGTATCATGACGTCGCTGGATATGTTCATCAACGGCTGGAGCGTATCGGCGGAGAATTTCCTAGCAAAGAGGAACGTATGCCGGCGGTAATGTTTAGCGGCGGAGGAAGACGACGAACTACGGCGGCCGGAGGTTTTAGTTCTCGTTCTGATTCTCATTTCAATGCCGCCGGCGCCGTCGCCGTCGCCGTATCTGAGGCGGGACATTCTCAGAGAACGTATGAGATTGGGTGTGACGTCAGATTTGTCGTACGTGCGAGGGTGGCCATCGAAACTCCCATTCCAGTCCACGTGTGTTAG

Protein sequence

MVDQTSGWDDLKHKYHDVAGYVHQRLERIGGEFPSKEERMPAVMFSGGGRRRTTAAGGFSSRSDSHFNAAGAVAVAVSEAGHSQRTYEIGCDVRFVVRARVAIETPIPVHVC
Homology
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BLAST of Carg03931 vs. NCBI nr
Match: KAG7020392.1 (hypothetical protein SDJN02_17076, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVDQTSGWDDLKHKYHDVAGYVHQRLERIGGEFPSKEERMPAVMFSGGGRRRTTAAGGFS 60
           MVDQTSGWDDLKHKYHDVAGYVHQRLERIGGEFPSKEERMPAVMFSGGGRRRTTAAGGFS
Sbjct: 1   MVDQTSGWDDLKHKYHDVAGYVHQRLERIGGEFPSKEERMPAVMFSGGGRRRTTAAGGFS 60

Query: 61  SRSDSHFNAAGAVAVAVSEAGHSQRTYEIGCDVRFVVRARVAIETPIPVHVC 113
           SRSDSHFNAAGAVAVAVSEAGHSQRTYEIGCDVRFVVRARVAIETPIPVHVC
Sbjct: 61  SRSDSHFNAAGAVAVAVSEAGHSQRTYEIGCDVRFVVRARVAIETPIPVHVC 112

The following BLAST results are available for this feature:
BLAST of Carg03931 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020392.13.0e-56100.00hypothetical protein SDJN02_17076, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03931 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03931 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03931 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03931-RACarg03931-RAmRNA