Carg03913 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03913
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr12: 1994393 .. 1995756 (+)
RNA-Seq Expression	Carg03913
Synteny	Carg03913

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGTATTCTACCACTGGGTCGCTTCACCTGAAACCAAAGCCTAATCCATCAAAAAGGGAGGAACTCAGTGCAAGCATCTCGACCCTCTTCTATATTAACCTACACTTACGTCCACCTCTACGAGGCTTCACTCTCATCTGGGGTTCACTTTATTCCGTGGTTCTGCGCTTATCAGGTGACTCTAGGGTTCCCACATTTCAATCTGTAACCTGTTGACGTTTGTTTGCGATTGTTCGTTGATCTGTGTTTTTCTTAACTATCTCGAACTGTTTTTCATTTTGGCCGGGGTGAGTTTATTGTTCGGCCCTTCAATTTGAGTATTTTGTATGCATCAGGCTTTATGCTTAGACTGTATTTCATTAACTGGTTTAAAGTTCATTTAATCTGTAGCTTGAACGATTAGTACTGTTTATCTGCATGTTTTCGTATGTAGAATATCAAATCTATTTAGGGTTTAAGGTTTTGCACTGAAATTTTATGCTATTTCAGTATGTGGTATATTGATTTATCTTATAGTCCTTGGGTACTGAAATTTAGTCATTGGTTGATTTGGTTCTTGTAAGGGAGCATATAGAATATTTATGTGAATGTTTTGCGTCGTTTTCACTTTGATGGATGGTTGCTCTTTATTTGCTTCAAGTTTGGTAAATATTTTCTTCTCGATTTCGTTTTGAGGTTCTGTCATGAATGGTTGTGGGTTCGTTAAGATTTCCTATTGCATTAAATCAACTTAGTCAAATTATTCTTCATCCTGCTCGAATTCGACAATTTTAGCTTTTGTCCCTTCCTTATGCGATTGTAATTTAATTGTCCAAGTGATCATAGCTATTTCGTAAGCTAATTTCGGTTGGCTGTATAGATTATGTTTTGCTCATTTATCTACTTTCACGAAACATGTTCCTGACTTGGGATGGAAATGTCCATGTTGATGGTTGCTAGGGAAAGAACCATTGGTAAGGATTGGAAAGAAAATAAGGAATGAAGTACGTAATATCAGAATTAAACCCTGTTTTGGTGTTTGAACTTTTTGTCTATTCTAATATGGTCCCCTAAACCATCAGAGGCTCTATGTTACTGTGCAGGATAAGCTATTTAGTTTATAGTTCTTATCAGTATTGTAAGACTCATGAGAAACTGGTCCACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCCTCCATTTCTTAATTAAAGCAGTCACCCCTTTCTCTCACCGCTATGCACTTCACTTTTTCTTCTTCCTTTTCATTTCTCTTCTCCATTTACTCAGATCTTTATTTCTCAATTAGCATGGTATGATGGTGACTTGCATTCAACTCCTCAAACCAGGTATATGATTGTAGTGCAAATTTGA

mRNA sequence

ATGAATTCGTATTCTACCACTGGGTCGCTTCACCTGAAACCAAAGCCTAATCCATCAAAAAGGGAGGAACTCAGTGCAAGCATCTCGACCCTCTTCTATATTAACCTACACTTACGTCCACCTCTACGAGGCTTCACTCTCATCTGGGGTTCACTTTATTCCGTGGTTCTGCGCTTATCAGCATGGTATGATGGTGACTTGCATTCAACTCCTCAAACCAGGTATATGATTGTAGTGCAAATTTGA

Coding sequence (CDS)

ATGAATTCGTATTCTACCACTGGGTCGCTTCACCTGAAACCAAAGCCTAATCCATCAAAAAGGGAGGAACTCAGTGCAAGCATCTCGACCCTCTTCTATATTAACCTACACTTACGTCCACCTCTACGAGGCTTCACTCTCATCTGGGGTTCACTTTATTCCGTGGTTCTGCGCTTATCAGCATGGTATGATGGTGACTTGCATTCAACTCCTCAAACCAGGTATATGATTGTAGTGCAAATTTGA

Protein sequence

MNSYSTTGSLHLKPKPNPSKREELSASISTLFYINLHLRPPLRGFTLIWGSLYSVVLRLSAWYDGDLHSTPQTRYMIVVQI

Homology

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BLAST of Carg03913 vs. NCBI nr
Match: KAG7020374.1 (hypothetical protein SDJN02_17058, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MNSYSTTGSLHLKPKPNPSKREELSASISTLFYINLHLRPPLRGFTLIWGSLYSVVLRLS 60
          MNSYSTTGSLHLKPKPNPSKREELSASISTLFYINLHLRPPLRGFTLIWGSLYSVVLRLS
Sbjct: 1  MNSYSTTGSLHLKPKPNPSKREELSASISTLFYINLHLRPPLRGFTLIWGSLYSVVLRLS 60

Query: 61 AWYDGDLHSTPQTRYMIVVQI 82
          AWYDGDLHSTPQTRYMIVVQI
Sbjct: 61 AWYDGDLHSTPQTRYMIVVQI 81

The following BLAST results are available for this feature:

BLAST of Carg03913 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020374.1	1.2e-38	100.00	hypothetical protein SDJN02_17058, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg03913 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03913 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03913 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03913-RA	Carg03913-RA	mRNA