Carg03893 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03893
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 1878385 .. 1879486 (+)
RNA-Seq ExpressionCarg03893
SyntenyCarg03893
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGAGTAGTGTCGAAGGACCTTTTCCATGAAGCTTGCCCTGCTTTTCCTGGTATGGAGATTTCATTAAAATATCTTGTTTGTGTCATAAATCTCCATAATGCATTGCTTAAGATCAGATTAAATTTTAGGCCCTTTTTCTCTCATCTTGTATCTTCTTTGTAAGTCCCAATTCAGAAGCCATCAAAATGTTGTTGAGGTAATTGTAATTTGGATCTTAGCATCTTCTTTGAGTCTTGGGCGAAGTTAGCTATGTACTCTGCAGTTGTCGATATTAGTGACTACGAGAGTAGAAAAGATGATATCTGAGCTCGAATTAAGCTACGTTTATCGAGCATTAGTTTTGGTTGTCCTAGACTGGAGATAAAGATATGAATTTATTCCCTTTTTATGCAACTTTTTCTTTAGAAAACTTAGAGAGTTGCTGCAGACGACTGTAGTTACTGCTAGGATTTGTGATGTCTTTTTCTCATAGTATCTCTGTTAGAAATAAATAACCCATACGTATTTATATGGGTCTTAGTATAACGGGTTTGTCTGGAAATATACGTACCCATATTTTATCCACCACATCGTGCATTTTGTGTCATTGCCTTTCGTCCCGCTTCGATTTGTTATAAACCGTTTACCACTCATCATTTTTTTTTGCATATTTTGTGTTGGTGAAGTCTGAATATACTTCTCTTGAGAACCATTATAATCTTGACGTTCTTTGATGAAACTTGATAGCATATTTTTCCTATATGGTTGCCCAATTAACATTTATTCATTGAGACAAATATTTGGTGAATCCAGGTATTGAACAAACTCGGCACAATGCCATTTATGGTTGATAACTGGTTGATGGGTTGCAAATTAAACCAACGATGATGCTCGGAACCTGTCGAACCTGTCGATGATTGATTCCTATAGCTGCGCATGGCACCAGTTCGGCCAAGTCGATTAATCCTCGAATGCAGAATGGCTCTGCAAATTTTCTCCTAACCAGACGGCCATGAGAGGACGACCAGTTAAATCGACAAGGTTGAGAGGTATCCATGGTGGCAGCTTCCATCTTGAAAGGGTAATCAAAATTGATGGGAATTACATACAAGATTGA

mRNA sequence

ATGCGACGAGTAGTGTCGAAGGACCTTTTCCATGAAGCTTGCCCTGCTTTTCCTGAATGGCTCTGCAAATTTTCTCCTAACCAGACGGCCATGAGAGGACGACCAGTTAAATCGACAAGGTTGAGAGGTATCCATGGTGGCAGCTTCCATCTTGAAAGGGTAATCAAAATTGATGGGAATTACATACAAGATTGA

Coding sequence (CDS)

ATGCGACGAGTAGTGTCGAAGGACCTTTTCCATGAAGCTTGCCCTGCTTTTCCTGAATGGCTCTGCAAATTTTCTCCTAACCAGACGGCCATGAGAGGACGACCAGTTAAATCGACAAGGTTGAGAGGTATCCATGGTGGCAGCTTCCATCTTGAAAGGGTAATCAAAATTGATGGGAATTACATACAAGATTGA

Protein sequence

MRRVVSKDLFHEACPAFPEWLCKFSPNQTAMRGRPVKSTRLRGIHGGSFHLERVIKIDGNYIQD
Homology
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BLAST of Carg03893 vs. NCBI nr
Match: KAG7020354.1 (hypothetical protein SDJN02_17038, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MRRVVSKDLFHEACPAFPEWLCKFSPNQTAMRGRPVKSTRLRGIHGGSFHLERVIKIDGN 60
          MRRVVSKDLFHEACPAFPEWLCKFSPNQTAMRGRPVKSTRLRGIHGGSFHLERVIKIDGN
Sbjct: 1  MRRVVSKDLFHEACPAFPEWLCKFSPNQTAMRGRPVKSTRLRGIHGGSFHLERVIKIDGN 60

Query: 61 YIQD 65
          YIQD
Sbjct: 61 YIQD 64

The following BLAST results are available for this feature:
BLAST of Carg03893 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020354.11.6e-30100.00hypothetical protein SDJN02_17038, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03893 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03893 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03893 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03893-RACarg03893-RAmRNA