Carg03875 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03875
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 1782920 .. 1783908 (+)
RNA-Seq ExpressionCarg03875
SyntenyCarg03875
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCACTCAGTATCTCCTTCTGCATCAACATCAACCAGGAACACTAGAACAATGCTCTCCACTCATCACTCAGATCTCTGCACCTCCCGCCAACTTTGATCTCTCTCGCTCTCGCAACCTTCCCGGCCAGCGTCGTCTCCGCCTGATCAGAGGTACTTTCCTTCTCAATTCGCTTCGTCAATTTGTTTCTGCATTTCGTTTTTTTTTTTTTTTTGTTCTTATTGCTGTTCATTGTTTCGTCACTGGTATCTGTTCATTCTCCATTCGCCTCGTGATTGTCGCGTTTGGTTTATTTGATCGATGCTTCATTGTTTAATCGCTGGTACTTACTTCTTCAGCTGTATTGTGATTTATGCAATTTGTCTGGTTGATTACTGTTCAGAATTTGTTTGATTATTGCAATGTCCTTCTTCATCTGCCTCGTGGTTTATGCATTTCGTTTATTTGATTGTCGTTCATAGTTTTATCATTGCTCGCCTTGTGATTTACATTTCGTATATGGTCACAGGTTTATCGCTGCTAATTCCTTGTTCATCTGCCTCGTGATTTATGCATTTCGTTTATTTGATCACTGTTCATAGTTTGATCAATGCTGATTTTATTTTTTATTCAGCTCTTGATTCTGATCACTTTCTTTTTAATTCTGATCATTAATCCTCACGCTATGTAGGAATGTGGAATCTATTTTGGCAGACAGAATACCCAACCTTGTATTCTTTGAGCTAGATTTCTGTTATATTGTCATTCTTATGAACGGTTATGAATCAATTTGTTTAGGTCATCATTGTTGATTGCCTTTGAGATTTTTGATACTTCACGTGTTCTCAGGTTTTCGGTGGTAAATGACGAGTGCTAATTTGCTGTCGTTTGTTTTCACTTTTAAGGGGAGACATCAGGGTAATTGGTGATGAAGTTTTTACTGGACAAATGAGCATACGGCCACTATGCCGTTATGATAAGTTTGATCGTGCATGGCAGCTTGCACTATAG

mRNA sequence

CCCACTCAGTATCTCCTTCTGCATCAACATCAACCAGGAACACTAGAACAATGCTCTCCACTCATCACTCAGATCTCTGCACCTCCCGCCAACTTTGATCTCTCTCGCTCTCGCAACCTTCCCGGCCAGCGTCGTCTCCGCCTGATCAGAGGTTTATCGCTGCTAATTCCTTGTTCATCTGCCTCGGGAGACATCAGGGTAATTGGTGATGAAGTTTTTACTGGACAAATGAGCATACGGCCACTATGCCGTTATGATAAGTTTGATCGTGCATGGCAGCTTGCACTATAG

Coding sequence (CDS)

CCCACTCAGTATCTCCTTCTGCATCAACATCAACCAGGAACACTAGAACAATGCTCTCCACTCATCACTCAGATCTCTGCACCTCCCGCCAACTTTGATCTCTCTCGCTCTCGCAACCTTCCCGGCCAGCGTCGTCTCCGCCTGATCAGAGGTTTATCGCTGCTAATTCCTTGTTCATCTGCCTCGGGAGACATCAGGGTAATTGGTGATGAAGTTTTTACTGGACAAATGAGCATACGGCCACTATGCCGTTATGATAAGTTTGATCGTGCATGGCAGCTTGCACTATAG

Protein sequence

PTQYLLLHQHQPGTLEQCSPLITQISAPPANFDLSRSRNLPGQRRLRLIRGLSLLIPCSSASGDIRVIGDEVFTGQMSIRPLCRYDKFDRAWQLAL
Homology
[Close]
BLAST of Carg03875 vs. NCBI nr
Match: KAG7020336.1 (hypothetical protein SDJN02_17020, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 7.6e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  PTQYLLLHQHQPGTLEQCSPLITQISAPPANFDLSRSRNLPGQRRLRLIRGLSLLIPCSS 60
          PTQYLLLHQHQPGTLEQCSPLITQISAPPANFDLSRSRNLPGQRRLRLIRGLSLLIPCSS
Sbjct: 1  PTQYLLLHQHQPGTLEQCSPLITQISAPPANFDLSRSRNLPGQRRLRLIRGLSLLIPCSS 60

Query: 61 ASGDIRVIGDEVFTGQMSIRPLCRYDKFDRAWQLAL 97
          ASGDIRVIGDEVFTGQMSIRPLCRYDKFDRAWQLAL
Sbjct: 61 ASGDIRVIGDEVFTGQMSIRPLCRYDKFDRAWQLAL 96

The following BLAST results are available for this feature:
BLAST of Carg03875 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020336.17.6e-48100.00hypothetical protein SDJN02_17020, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg03875 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03875 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03875 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03875-RACarg03875-RAmRNA