Carg03837 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03837
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 1547682 .. 1548841 (+)
RNA-Seq ExpressionCarg03837
SyntenyCarg03837
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTACTAATATTGTTTGTCAACACTGGGATGGCTGTCAATTACACCCGATTCCCTTTTTCGGAACCAGAAGAACGGCTGCCATCGGGTTTCCGAGTGCCATCAGTAGCGACGGTGCAGTTCCTCGAACCATTCTACTCTACTTTGCTTTTGTATTTTTCGTGAAGCTAAATACTTCGGCATAGACTTTGTGGTTATTAATCTTTGATTGCAATTAGAGAATGGTTTCTTGAACTGAAACATGGAGGCAATGAAGAACATTTTTTTGATTGTAGAGTTCCAGAGTGAAAGAATTGGATAATCTTTGTTACTCATTCTGTTTCCGTTATCGACTGCAGGTATCTGAATTATATATCAACAACTTCGTAATCTCCCGACTCGTCTTGGCTCGATACTGGATTTCAAGAAATACTCAACCGTCGTCTGTTCACGTACACCGTGCACTTCAGATTTTTCAGCTCAAAGGTACATTGATGTTTTATTGAGATGTTAACTTCATTTTCCTGCATAGTTTGTCATCTTGGCGATGATTCTTTGACGTATGATCGGTTTCTTCGACAGTTACGATACATATTAACATCTTATAACTCAACATATGACTGTTTCATTATGGGGTTTGATTTCTGATTGATGAGAATCTTAGGCAGATGAAAATCAATGGTTGCTGTTTCGTAATACCTCGATTACATCTCGATTACCGCCATTTATAGCGTAAAGTTTATTGTCATAGCAATCTTTTCCTAGTAAAATAACCCATGCCTGCAAAATTGTTCTTTTAAAGTTCGATAAAAGCCCTCCGAAAACGATCATGAAAGTTGTTAGATCTTTTAAAATCTCGATCTGAGCTGATGATAAACATAGAACACCACATGTGCCTTTTCGTTCTACATGAAAATTACGCACCATTTCTGATGTTTAACGATGAACACGAACACGTGTTCTTAATCGTTAAGATTCATCTGATTCCCCCTAGTTTCCAGTTTTGATCTCTACATTGTTTGTATAGATCTTGGTTGATGATCATAAATTGTTTTGAGATATGAACTGCACCTAACAGGATCTTGAATGGGTAGAGATTTGAATCAAGAATCTGTTCTTTTTGCAGCCGAGGGCGCTGGTAATTTGGTTATTGCGTGCCTTGTAGCCCACCGCCATTACTAA

mRNA sequence

GGTTACTAATATTGTTTGTCAACACTGGGATGGCTGTCAATTACACCCGATTCCCTTTTTCGGAACCAGAAGAACGGCTGCCATCGGGTTTCCGAGTGCCATCAGTAGCGACGGTATCTGAATTATATATCAACAACTTCGTAATCTCCCGACTCGTCTTGGCTCGATACTGGATTTCAAGAAATACTCAACCGTCGTCTGTTCACGTACACCGTGCACTTCAGATTTTTCAGCTCAAAGCCGAGGGCGCTGGTAATTTGGTTATTGCGTGCCTTGTAGCCCACCGCCATTACTAA

Coding sequence (CDS)

ATGGCTGTCAATTACACCCGATTCCCTTTTTCGGAACCAGAAGAACGGCTGCCATCGGGTTTCCGAGTGCCATCAGTAGCGACGGTATCTGAATTATATATCAACAACTTCGTAATCTCCCGACTCGTCTTGGCTCGATACTGGATTTCAAGAAATACTCAACCGTCGTCTGTTCACGTACACCGTGCACTTCAGATTTTTCAGCTCAAAGCCGAGGGCGCTGGTAATTTGGTTATTGCGTGCCTTGTAGCCCACCGCCATTACTAA

Protein sequence

MAVNYTRFPFSEPEERLPSGFRVPSVATVSELYINNFVISRLVLARYWISRNTQPSSVHVHRALQIFQLKAEGAGNLVIACLVAHRHY
Homology
[Close]
BLAST of Carg03837 vs. NCBI nr
Match: KAG6585383.1 (hypothetical protein SDJN03_18116, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020299.1 hypothetical protein SDJN02_16982 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 7.5e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAVNYTRFPFSEPEERLPSGFRVPSVATVSELYINNFVISRLVLARYWISRNTQPSSVHV 60
          MAVNYTRFPFSEPEERLPSGFRVPSVATVSELYINNFVISRLVLARYWISRNTQPSSVHV
Sbjct: 1  MAVNYTRFPFSEPEERLPSGFRVPSVATVSELYINNFVISRLVLARYWISRNTQPSSVHV 60

Query: 61 HRALQIFQLKAEGAGNLVIACLVAHRHY 89
          HRALQIFQLKAEGAGNLVIACLVAHRHY
Sbjct: 61 HRALQIFQLKAEGAGNLVIACLVAHRHY 88

The following BLAST results are available for this feature:
BLAST of Carg03837 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585383.17.5e-42100.00hypothetical protein SDJN03_18116, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg03837 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03837 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03837 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03837-RACarg03837-RAmRNA