Carg03814 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03814
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LITAF domain-containing protein
Location	Carg_Chr08: 47169 .. 48857 (-)
RNA-Seq Expression	Carg03814
Synteny	Carg03814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCCCTTCCATCGTAATCCTCCCCTACCGCCGTTTTTCGTTTTCCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAATATGTCCGAGGACGACAAGCCGGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAATTTCCGGTCTCACCACCGTCAGGTGCCCTTTCTACCTTCTCTCTACCACTGCGTCTACGTTGCTTTTCTCCTCTCTTTTATCTTTTTTAAATTCTGCCTTATTATTATTATTATTATTTTTTTTTGGAACTTCTCTTTGATTGATCAATGGGCCTTCCCCGTTTTTCTTTCTTTGACCTAATTTTGCCGTTTAGGATTTGAATACTTGTATGCCTAAAATTGTTTTGGGTTGATCTTGCTTACAACGCAAGGCAAGTATTTTGTGGTGGTTGTCGATATGTTTTAACAAGTAATTCAGATCATTTACTTTACTATGGTTAAATAATAATGTTCACCACATTGTGGTAGTTCCGACCGATTGCTGTTTGTGTTTGGCTTCTTACATAAAACTAATTGGATTATATAAAAGCTCAGTCTGGACGCAGGTGCAAAGTGATATAAATTCAAGGCCTCCCAAATGCTTTACACCATACCAACAACTTTTGTTTGGTTTTAAATCCCTTTCCATTTTACAAACATTCAATTGGTTTACTTTTACCAAAGATGCTCCGAGCATTATTATTGTTAGTGAGGCAGCATTGATTTCCCTTGCAACCGGGGCATTTGAAATTTTATCGTGCAGGACTTGTCAGTCAAATCGATTTCTTCTTTTTTTTGTTCAACAACATCTATGACAATCACAATAATAGCATAAATCAAATAGGTTCGTTTTTAGTGAGAGAAGCATAAAGAACTATAAGGCCAAATGTTGGTAGCAGGGCACCGATATGATTTATCATGGTTGAACAGCAGAAGTTTGTGTACATTTATTTTGAGCAAGAAGATGTAGGCGGGGGGTGGGGGGAGAGAGGCGTATGTTGTCTGTTTGCGTTCAATTCAATAATTATGTTTGTTCTTCATCTGGTTATCATACTTTCGTGACCTCTACAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATGACTATTTCCGGTCATCTTTCATTCTGTCAGTTGCTTCTTGTAATCTACATGTTGATTATTTGACACTTCGCTCTGTTATAGACAATTGGAGTAATTAACTATGCTATCTATCTTTTGTTTAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTGCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATATGTACACTCGTGATAGAACCAAGTACATATTTTTATCCATTCACCTTACAAGTCATTTCATACACC

mRNA sequence

TCTTTCCCTTCCATCGTAATCCTCCCCTACCGCCGTTTTTCGTTTTCCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAATATGTCCGAGGACGACAAGCCGGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAATTTCCGGTCTCACCACCGTCAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTGCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATATGTACACTCGTGATAGAACCAAGTACATATTTTTATCCATTCACCTTACAAGTCATTTCATACACC

Coding sequence (CDS)

ATGTCCGAGGACGACAAGCCGGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAATTTCCGGTCTCACCACCGTCAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGCTTGA

Protein sequence

MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA

Homology

[Close]

BLAST of Carg03814 vs. NCBI nr
Match: KAG7025225.1 (GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60
           MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV
Sbjct: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60

Query: 61  GCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120
           GCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA
Sbjct: 61  GCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120

[Close]

BLAST of Carg03814 vs. NCBI nr
Match: XP_023514783.1 (GSH-induced LITAF domain protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 1.7e-65
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60
           MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSK+SSAAVV
Sbjct: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKISSAAVV 60

Query: 61  GCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120
           GCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA
Sbjct: 61  GCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120

[Close]

BLAST of Carg03814 vs. NCBI nr
Match: XP_022960171.1 (GSH-induced LITAF domain protein-like [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 6.5e-65
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60
           MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV
Sbjct: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60

Query: 61  GCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120
           GCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSNWTQQSFALPA
Sbjct: 61  GCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSNWTQQSFALPA 120

[Close]

BLAST of Carg03814 vs. NCBI nr
Match: XP_023004350.1 (GSH-induced LITAF domain protein-like [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVS 60
           MS+DD P     VGKTAP+AIFDDPQGVPIQQTMFRDTPAPFYCVYCG SGLTTVRSK+S
Sbjct: 1   MSKDDTPVVGTQVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSGLTTVRSKIS 60

Query: 61  SAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQS 120
           SAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSNWTQQS
Sbjct: 61  SAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSNWTQQS 120

[Close]

BLAST of Carg03814 vs. NCBI nr
Match: XP_038906445.1 (GSH-induced LITAF domain protein [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 4.9e-52
Identity = 100/134 (74.63%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MSEDDKPV--------------GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISG 60
           MS++D+PV              G+   NAIF DPQGVPIQQTM+RDTPAPFYCVYCG SG
Sbjct: 1   MSKNDEPVVGIPLYDGNNPYQAGQIPSNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60

Query: 61  LTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVM 120
           LT VRSK+SSAAVVGCMTP +LGVCFL PS+DCLWHKYHYCPSCKEKVGDFEK D+CAVM
Sbjct: 61  LTDVRSKISSAAVVGCMTPFLLGVCFLFPSMDCLWHKYHYCPSCKEKVGDFEKMDRCAVM 120

[Close]

BLAST of Carg03814 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 75/112 (66.96%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 9   GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLML 68
           G   PNAI+ DP G PIQQT++RDTPAPF C+YCG +GLT +RSK   AAVV CM P ML
Sbjct: 23  GIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTGLTNLRSKPGVAAVVACMMPFML 82

Query: 69  GVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 121
           G CFLCPS+DCLW+K H+CP C  KV DFEK D C VMDP  W Q SFALPA
Sbjct: 83  GFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVMDPPQWKQPSFALPA 134

[Close]

BLAST of Carg03814 vs. ExPASy TrEMBL
Match: A0A6J1H6W0 (GSH-induced LITAF domain protein-like OS=Cucurbita moschata OX=3662 GN=LOC111460990 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.2e-65
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60
           MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV
Sbjct: 1   MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVV 60

Query: 61  GCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120
           GCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSNWTQQSFALPA
Sbjct: 61  GCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSNWTQQSFALPA 120

[Close]

BLAST of Carg03814 vs. ExPASy TrEMBL
Match: A0A6J1KUC0 (GSH-induced LITAF domain protein-like OS=Cucurbita maxima OX=3661 GN=LOC111497692 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.2e-60
Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVS 60
           MS+DD P     VGKTAP+AIFDDPQGVPIQQTMFRDTPAPFYCVYCG SGLTTVRSK+S
Sbjct: 1   MSKDDTPVVGTQVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSGLTTVRSKIS 60

Query: 61  SAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQS 120
           SAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSNWTQQS
Sbjct: 61  SAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSNWTQQS 120

[Close]

BLAST of Carg03814 vs. ExPASy TrEMBL
Match: A0A0A0KDG7 (LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 9   GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLML 68
           G+  PNAIF DP GVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+SSAAVVGCM P ML
Sbjct: 23  GQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFML 82

Query: 69  GVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALP 120
           GVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP +WTQ S+ALP
Sbjct: 83  GVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP 133

[Close]

BLAST of Carg03814 vs. ExPASy TrEMBL
Match: A0A5D3DMB0 (Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002020 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.0e-51
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 9   GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLML 68
           G+  PNAIF DPQGVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+S AAVVGCM P ML
Sbjct: 23  GQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISLAAVVGCMMPFML 82

Query: 69  GVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALP 120
           GVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP +WTQ S+ALP
Sbjct: 83  GVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP 133

[Close]

BLAST of Carg03814 vs. ExPASy TrEMBL
Match: A0A1S3CCH3 (uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.6e-51
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 9   GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLML 68
           G+  PN IF DPQGVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+S AAVVGCM P ML
Sbjct: 23  GQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISLAAVVGCMMPFML 82

Query: 69  GVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALP 120
           GVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP +WTQ S+ALP
Sbjct: 83  GVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP 133

[Close]

BLAST of Carg03814 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-43
Identity = 75/112 (66.96%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 9   GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLML 68
           G   PNAI+ DP G PIQQT++RDTPAPF C+YCG +GLT +RSK   AAVV CM P ML
Sbjct: 23  GIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTGLTNLRSKPGVAAVVACMMPFML 82

Query: 69  GVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 121
           G CFLCPS+DCLW+K H+CP C  KV DFEK D C VMDP  W Q SFALPA
Sbjct: 83  GFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVMDPPQWKQPSFALPA 134

The following BLAST results are available for this feature:

BLAST of Carg03814 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025225.1	1.6e-66	100.00	GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023514783.1	1.7e-65	97.50	GSH-induced LITAF domain protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960171.1	6.5e-65	97.50	GSH-induced LITAF domain protein-like [Cucurbita moschata]	[more]
XP_023004350.1	1.1e-59	88.80	GSH-induced LITAF domain protein-like [Cucurbita maxima]	[more]
XP_038906445.1	4.9e-52	74.63	GSH-induced LITAF domain protein [Benincasa hispida]	[more]

BLAST of Carg03814 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	1.1e-41	66.96	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of Carg03814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6W0	3.2e-65	97.50	GSH-induced LITAF domain protein-like OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]
A0A6J1KUC0	5.2e-60	88.80	GSH-induced LITAF domain protein-like OS=Cucurbita maxima OX=3661 GN=LOC11149769...	[more]
A0A0A0KDG7	1.5e-51	82.88	LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 ...	[more]
A0A5D3DMB0	2.0e-51	82.88	Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CCH3	7.6e-51	81.98	uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=...	[more]

BLAST of Carg03814 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	7.5e-43	66.96	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 34..99 e-value: 3.8E-11 score: 53.0
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 32..96 e-value: 2.5E-11 score: 43.7
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 19..99 score: 11.091623
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 8..112
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 8..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03814-RA	Carg03814-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding