Carg03787 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03787
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II reaction center Psb28 protein
Location	Carg_Chr08: 178971 .. 181016 (+)
RNA-Seq Expression	Carg03787
Synteny	Carg03787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTGGTCTCTCCCTCTCTGCACTACCATTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGGTAATTCTATCACTCTCTCCCTTCCCACTTTGCACCCTTAATTCTTATCTGCAAGTTAAACACTACCTCCCTGCTCTCTTTAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTCCGGCGGAAAATGCCAGACGCTTGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTTAAAGAGTTAATTGGAAATGTGTTGTATGTTTCTATCCCCTCTTCTTTCTTCAACTAGATCAAATTCGTTCTTGTTCATGTTATCTTCCACAAAAAAGAAACAAAAATCAAGGTGCTTACAAATTAGCCAGACAAAAACAAAAGGTCCTACTTGGAACATTGCAATCCAATGGCTTTCCCATTAGTATCAAAGTAGAATCTTAAGAACGAAACGTTCTCATCTCTAAAACCAACAGAAAGAGGAGTACAAGAAGAACAAGCAGCATTACACTCCATTGGCATAGTTGATGAACTGATCTGTAATTTTGATGTGATTTTTTATTCGCATCTCCAATGAAGAACTGAACTCCTGGGCTTTCCATTCTGACCTCACTTCCATTCAATGTTGAATTGTTCACACCCTGAATGTTGCTGTTTACATAAATGTTTATGCAACAACAGTTGGGCAATTTACCTTCACTTCCATGGCTGACTGACATTGAAGCTCCAATGTTTCTACCTCCCAATCTCACTCGCTCGAATGCTCCGACCCCATCCTCGTCTCCCACCTCCATCTTTCCTTGGATTCTATTACCTTCACCTATGAATCGTCCTCTTCGAAATCTGATGTTTGAGTTTATATATTTGATACTCCAATTCAAAAGTGCATCTCGGATTCCTTCCTTGTGTAATGGGTTTTCTTAGTCCCTCACTTTTCAGCTTCAAAAGCAGCTTATAACCTTCACACTCAATCCCTCTACTTAAAATGTCACCAAAAAGTCACAGATACCAATATATATATATAAATGGGCAATTCGGCGTTCACCTAGCTTAGCTTATCAGAAATCTTTAACCATAGACTTAGGATACCACATCAAAAATACAATTTATGATCTTATGATCATAAAATACTGTGACCAAGCATCCAACCTATATTAATTACAACACCAAATACATTGTGCATTCTAAACCATGAACGAAGAAGATAAAGATACACGAGGCTTGAACTTGAAACTTTCTCCATTTTATTTAATCAAATCAAGACATAAACAGGCCATTCTCAAAGCTTTTCAACTAAGTTAATACAAAATATCCGGGGCTTCAATAATATTCAAAAGAAGCCTAAGTAAAAGAATCAGGAGAAAATCTTTCACTGACTGTGGAACCGAATTGCGGGCCACCTTTACGGTATGATATAAGATACTCGACAGGATACCCCTTCAACTTATGTGGTGCAATCCCAAGATCATT

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTGGTCTCTCCCTCTCTGCACTACCATTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTCCGGCGGAAAATGCCAGACGCTTGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTTAAAGAGTTAATTGGAAATGTGTTGTATGTTTCTATCCCCTCTTCTTTCTTCAACTAGATCAAATTCGTTCTTGTTCATGTTATCTTCCACAAAAAAGAAACAAAAATCAAGGTGCTTACAAATTAGCCAGACAAAAACAAAAGGTCCTACTTGGAACATTGCAATCCAATGGCTTTCCCATTAGTATCAAAGTAGAATCTTAAGAACGAAACGTTCTCATCTCTAAAACCAACAGAAAGAGGAGTACAAGAAGAACAAGCAGCATTACACTCCATTGGCATAGTTGATGAACTGATCTGTAATTTTGATGTGATTTTTTATTCGCATCTCCAATGAAGAACTGAACTCCTGGGCTTTCCATTCTGACCTCACTTCCATTCAATGTTGAATTGTTCACACCCTGAATGTTGCTGTTTACATAAATGTTTATGCAACAACAGTTGGGCAATTTACCTTCACTTCCATGGCTGACTGACATTGAAGCTCCAATGTTTCTACCTCCCAATCTCACTCGCTCGAATGCTCCGACCCCATCCTCGTCTCCCACCTCCATCTTTCCTTGGATTCTATTACCTTCACCTATGAATCGTCCTCTTCGAAATCTGATGTTTGAGTTTATATATTTGATACTCCAATTCAAAAGTGCATCTCGGATTCCTTCCTTGTGTAATGGGTTTTCTTAGTCCCTCACTTTTCAGCTTCAAAAGCAGCTTATAACCTTCACACTCAATCCCTCTACTTAAAATGTCACCAAAAAGTCACAGATACCAATATATATATATAAATGGGCAATTCGGCGTTCACCTAGCTTAGCTTATCAGAAATCTTTAACCATAGACTTAGGATACCACATCAAAAATACAATTTATGATCTTATGATCATAAAATACTGTGACCAAGCATCCAACCTATATTAATTACAACACCAAATACATTGTGCATTCTAAACCATGAACGAAGAAGATAAAGATACACGAGGCTTGAACTTGAAACTTTCTCCATTTTATTTAATCAAATCAAGACATAAACAGGCCATTCTCAAAGCTTTTCAACTAAGTTAATACAAAATATCCGGGGCTTCAATAATATTCAAAAGAAGCCTAAGTAAAAGAATCAGGAGAAAATCTTTCACTGACTGTGGAACCGAATTGCGGGCCACCTTTACGGTATGATATAAGATACTCGACAGGATACCCCTTCAACTTATGTGGTGCAATCCCAAGATCATT

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTCCGGCGGAAAATGCCAGACGCTTGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGA

Protein sequence

MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

[Close]

BLAST of Carg03787 vs. NCBI nr
Match: KAG6592844.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025252.1 Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.1 bits (941), Expect = 8.9e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of Carg03787 vs. NCBI nr
Match: XP_023005079.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 365.5 bits (937), Expect = 2.6e-97
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR
Sbjct: 40  MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 99

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 100 PRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 159

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 160 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 219

Query: 181 KK 183
           KK
Sbjct: 220 KK 221

[Close]

BLAST of Carg03787 vs. NCBI nr
Match: XP_022960122.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-96
Identity = 180/182 (98.90%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFAS TLHRSAFSAFYGRSLSV GGKCQTLGRRRCEAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of Carg03787 vs. NCBI nr
Match: XP_023514182.1 (photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 181/182 (99.45%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRR EAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of Carg03787 vs. NCBI nr
Match: KAG6576078.1 (Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 163/188 (86.70%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSS--TKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRR 60
           MATLQSLAST    PHLHHPSS  TK FASA LH S FSAF+GRSL+VSGGKCQT+ RRR
Sbjct: 1   MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 60

Query: 61  CEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
           C+ HGRP N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDSS
Sbjct: 61  CQPHGRPSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 186

[Close]

BLAST of Carg03787 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 4.6e-57
Identity = 114/154 (74.03%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 29  RSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDV 88
           +S  S+F G SL     K  +L R       RP   +VMM  RP IQFIQGTDEQT+PDV
Sbjct: 33  QSLHSSFGGVSLQCRRTKPASLHR------SRPSMQVVMMAARPAIQFIQGTDEQTIPDV 92

Query: 89  RLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAG 148
           RLTKSRDGTNG+AIF FD+PSVFDSSAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA 
Sbjct: 93  RLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPAL 152

Query: 149 IEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 183
           IEAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 153 IEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of Carg03787 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-52
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 0


Query: 1   MATLQSLASTPHLHH-----PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 60
           MA ++S+ S   ++H     P S  V +S ++     S+F G  +S+   + Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTAL 60

Query: 61  EAHGRPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
               RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS
Sbjct: 61  ----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of Carg03787 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-34
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 73  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDEEGV 132
           KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F  P++ D S+A+ G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 133 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Carg03787 vs. ExPASy Swiss-Prot
Match: Q00UI6 (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri OX=70448 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-34
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 62  RNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDIT 121
           R+ +V       IQF++G +E  VP+VRLT+S+DG+NG A F F +P VF++    GDIT
Sbjct: 29  RSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDIT 88

Query: 122 GFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 181
           G ++ DEEG + +VDVNAKF+NGKP GIEA+YVM+T  +W+RFMRFMERY+  NGL F K
Sbjct: 89  GMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGLGFSK 147

Query: 182 K 183
           K
Sbjct: 149 K 147

[Close]

BLAST of Carg03787 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.2e-34
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 73  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDEEGV 132
           KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F  P++ D ++A+ G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 133 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of Carg03787 vs. ExPASy TrEMBL
Match: A0A6J1KY50 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111498173 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR
Sbjct: 40  MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 99

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 100 PRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 159

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 160 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 219

Query: 181 KK 183
           KK
Sbjct: 220 KK 221

[Close]

BLAST of Carg03787 vs. ExPASy TrEMBL
Match: A0A6J1H6H6 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111460964 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.2e-97
Identity = 180/182 (98.90%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGR 60
           MATLQSLASTPHLHHPSSTKVFAS TLHRSAFSAFYGRSLSV GGKCQTLGRRRCEAHGR
Sbjct: 1   MATLQSLASTPHLHHPSSTKVFASTTLHRSAFSAFYGRSLSVFGGKCQTLGRRRCEAHGR 60

Query: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120
           PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI
Sbjct: 61  PRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDI 120

Query: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180
           TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV
Sbjct: 121 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 180

Query: 181 KK 183
           KK
Sbjct: 181 KK 182

[Close]

BLAST of Carg03787 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.7e-82
Identity = 163/188 (86.70%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSS--TKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRR 60
           MATLQSLAST    PHLHHPSS  TK FASA LH SAFSAF+GRSL+VSGGKCQT+ RRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRRR 96

Query: 61  CEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
           C+ HGR  N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDSS
Sbjct: 97  CKPHGRLSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 156

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 157 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 216

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 217 NGLQFVKK 222

[Close]

BLAST of Carg03787 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.8e-81
Identity = 162/189 (85.71%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSSTK---VFASATLHRSAFSAFYGRSLSVSGGKCQTLGRR 60
           MATLQSLAST    PHLHHPSST     FASA LH SAFSAF+GRSL+VSGGKCQT+ RR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDS 120
           RC+ HGR  N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDS
Sbjct: 97  RCKPHGRLSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDS 156

Query: 121 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 180
           S EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN
Sbjct: 157 SGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 216

Query: 181 ANGLQFVKK 183
           ANGLQFVKK
Sbjct: 217 ANGLQFVKK 223

[Close]

BLAST of Carg03787 vs. ExPASy TrEMBL
Match: A0A6J1GP93 (Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LOC111455888 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.7e-81
Identity = 161/188 (85.64%), Postives = 169/188 (89.89%), Query Frame = 0


Query: 1   MATLQSLAST----PHLHHPSS--TKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRR 60
           MATLQSLAST    PHLHHPSS  TK  ASA LH S FSAF+GRSL+VSGGKCQT+ RRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKACASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 103

Query: 61  CEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
           C+ +GRP N I  +MV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF++PSVFDSS
Sbjct: 104 CQPYGRPSNTI--LMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 163

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 164 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 223

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 224 NGLQFVKK 229

[Close]

BLAST of Carg03787 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-53
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 0


Query: 1   MATLQSLASTPHLHH-----PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 60
           MA ++S+ S   ++H     P S  V +S ++     S+F G  +S+   + Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTAL 60

Query: 61  EAHGRPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
               RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS
Sbjct: 61  ----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of Carg03787 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-52
Identity = 93/124 (75.00%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 60  RPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 119
           RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 120 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 179
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 180 FVKK 183
           FVKK
Sbjct: 194 FVKK 197

The following BLAST results are available for this feature:

BLAST of Carg03787 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592844.1	8.9e-98	100.00	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]
XP_023005079.1	2.6e-97	99.45	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxi...	[more]
XP_022960122.1	1.3e-96	98.90	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita mosc...	[more]
XP_023514182.1	1.7e-96	99.45	photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo...	[more]
KAG6576078.1	1.8e-82	86.70	Photosystem II reaction center PSB28 protein, chloroplastic, partial [Cucurbita ...	[more]

BLAST of Carg03787 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	4.6e-57	74.03	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	5.9e-52	57.45	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	1.9e-34	60.00	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
Q00UI6	4.2e-34	56.20	Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus taur...	[more]
A0T0H5	4.2e-34	58.18	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]

BLAST of Carg03787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY50	1.3e-97	99.45	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H6H6	6.2e-97	98.90	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JWT9	5.7e-82	86.70	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JMC2	2.8e-81	85.71	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GP93	3.7e-81	85.64	Photosystem II reaction center Psb28 protein OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Carg03787 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.1	4.2e-53	57.45	photosystem II reaction center PSB28 protein	[more]
AT4G28660.2	1.6e-52	75.00	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 72..182 e-value: 3.6E-45 score: 154.8
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 74..180 e-value: 4.4E-45 score: 150.4
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 74..179 e-value: 9.3E-43 score: 144.8
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 2..182
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 71..180 score: 30.418152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03787-RA	Carg03787-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II