Carg03659 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03659
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S14
Location	Carg_Chr14: 1426475 .. 1428585 (+)
RNA-Seq Expression	Carg03659
Synteny	Carg03659

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCCTATTTTGCAAGCCCTAACTATAAAAGGAAACTATCATCTACCAGGTGTAGCGCTAGTGGATCTAGGGTTGAAGCCAAGTCTCTGAAGCTCAAACTTTGCCGAGTTCCGTCCTTCACACGCACCATGGTATTACATCATATTCTTTTTCCATTTTAATTCATGTTTTCAATCCCTTAAAATTTTAGCTTCAATCTCCTGCGGATTATAATTGTCGAAGAAAATGTAGAGAATCCTATGACAAATCTATGACAATCTCCTGCGGTCTCCTTTTATATCAGAAGCTTAGTGAAGGAGAGCGGAAATGTTTGTATGCCCGATGTTTAATTTTCGTTAAATAAATCCGGCGTTGATTATTGGCTGCATTTTAATCGACGTTCCTTCAAGTTTTCGGTCTAAACCTAAATTATGAGGTAAGCGAATTGATTACTCCCTTTGTGATGTGTATTATGTAGTCGAGAAGGAAGACTAGAGAGCCCAAGGAGGAAACTGTCACCCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTCGCTCACATTTTTGCTTCGTTTAATGACACTTTTATTGTGAGTAATCTTCATTGGATTTTTCTTTTAGTCCTTAGTTGATTTTTTGAGCAATTGACTGATTGTTTTATGCTTGAGTTGCAGCATGTGACTGATTTGTCTGGTCGGGAAACACTTGTCCGCATCACTGGTATGCAATGTCTTCCAATCACTGTTAAAATTGATTCTGGCATTACTTTTGGCCTGCTTTTTTTAGTGATTCCACTGGTTTATAAATTATACTTTCATGGTCATGTACTTGGTTTTTGGTTGATAATATCCATGTGTTTTACGTTCGACCACCTTTGTGATTTGGTATTCTCTGACTTCTGAATTGTTTGATTGGATGGTATATCTTTTCTTTATCCAGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCTTATGCTGCCATGCTTGCTGCACAAGACGTTTCTCAGAGATGCAAGGTTTGCTCACTAATCAGATTTATGTTTCTTTTCATCCCAATGTTCTTAATCTAAATGTGGTAAACTGCTTTTCATCCCAATGTGCATTTGTATTCATTTGCATTATAGTGCTTTTACTTCCATGGCATCATCTCTCTAAACCCCGGTAATATGTAACAGGAACTTGGCATTACTGCTTTACATATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAAACTCCTGGACCTGGCGCTCAATCAGCTCTTAGAGCCCTTGCTCGTTCAGGCATGAGAATTGGTCGTATAGGTACATATCCTTACTTCCAATATTATTATCAAGAATTGCTAGATTATTTTCAGTAAGAAACCAAAGCCTCTCCATTTGGCATATCATCCTTAACGTGAAGTGCATTTGCTATTATGTATAAATGTTCTGTTTTGAAGTTCAAGCTACCTTGTGATAGTCAACACTTAGGGCATTCCAAGTGTTCATTAAAAATCATTTTTTACGAAAAGCATCTAGCTTCCAATTCGGATATTTTAAAACACGTGAGAAAATTTCATAAAATATCTCCTCAAACGGTTTCTTTAGCAAACTATTTTTTTTTATGTTTCAAAGTTGTCGTATTTTTCTACTACCAGCTTTCCTTGCAATCTTCAAAACTGCTTGATTTACCCAATTTTTGGTGTCTTATCAGAGGATGTGACTCCAATCCCGACCGACAGTACTCGAAGAAAGGGTGGCAGGAGAGGAAGAAGATTGTGATTCATAGCCATCTTCAAAATTTTCGCGGCTCACTGTTGAGATCCATAGTTTTAGTTAAGGTAGAATGTTCTCATCTGTTAATTCGACAGTCTGATGTTCTGGTTTCTGCTTTTTTAATCAAGATTTTCCCCGTTTTGATTTGAATTATTGAAGTCAGATTTAGACCTTTTTTTGCTGCACTTTATAACTATTAATTAGTGTCCATGTGTGGGATTCATTGCATATGCCAACAAATCTAAGTTAATTTTAATTATTGCCATTCTAGGTTCTTCACTTTGATCCTTTCCAAATTGATTTTTCATCAAACATATTATCATAACAATTATATGATTCTAGTCGATTACATGATG

mRNA sequence

CGCCCCTATTTTGCAAGCCCTAACTATAAAAGGAAACTATCATCTACCAGGTGTAGCGCTAGTGGATCTAGGGTTGAAGCCAAGTCTCTGAAGCTCAAACTTTGCCGAGTTCCGTCCTTCACACGCACCATGTCGAGAAGGAAGACTAGAGAGCCCAAGGAGGAAACTGTCACCCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTCGCTCACATTTTTGCTTCGTTTAATGACACTTTTATTCATGTGACTGATTTGTCTGGTCGGGAAACACTTGTCCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCTTATGCTGCCATGCTTGCTGCACAAGACGTTTCTCAGAGATGCAAGGAACTTGGCATTACTGCTTTACATATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAAACTCCTGGACCTGGCGCTCAATCAGCTCTTAGAGCCCTTGCTCGTTCAGGCATGAGAATTGGTCGTATAGAGGATGTGACTCCAATCCCGACCGACAGTACTCGAAGAAAGGGTGGCAGGAGAGGAAGAAGATTGTGATTCATAGCCATCTTCAAAATTTTCGCGGCTCACTGTTGAGATCCATAGTTTTAGTTAAGGTAGAATGTTCTCATCTGTTAATTCGACAGTCTGATGTTCTGGTTTCTGCTTTTTTAATCAAGATTTTCCCCGTTTTGATTTGAATTATTGAAGTCAGATTTAGACCTTTTTTTGCTGCACTTTATAACTATTAATTAGTGTCCATGTGTGGGATTCATTGCATATGCCAACAAATCTAAGTTAATTTTAATTATTGCCATTCTAGGTTCTTCACTTTGATCCTTTCCAAATTGATTTTTCATCAAACATATTATCATAACAATTATATGATTCTAGTCGATTACATGATG

Coding sequence (CDS)

CGCCCCTATTTTGCAAGCCCTAACTATAAAAGGAAACTATCATCTACCAGGTGTAGCGCTAGTGGATCTAGGGTTGAAGCCAAGTCTCTGAAGCTCAAACTTTGCCGAGTTCCGTCCTTCACACGCACCATGTCGAGAAGGAAGACTAGAGAGCCCAAGGAGGAAACTGTCACCCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTCGCTCACATTTTTGCTTCGTTTAATGACACTTTTATTCATGTGACTGATTTGTCTGGTCGGGAAACACTTGTCCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCTTATGCTGCCATGCTTGCTGCACAAGACGTTTCTCAGAGATGCAAGGAACTTGGCATTACTGCTTTACATATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAAACTCCTGGACCTGGCGCTCAATCAGCTCTTAGAGCCCTTGCTCGTTCAGGCATGAGAATTGGTCGTATAGAGGATGTGACTCCAATCCCGACCGACAGTACTCGAAGAAAGGGTGGCAGGAGAGGAAGAAGATTGTGA

Protein sequence

RPYFASPNYKRKLSSTRCSASGSRVEAKSLKLKLCRVPSFTRTMSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL

Homology

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BLAST of Carg03659 vs. NCBI nr
Match: KAG7017469.1 (40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 2.0e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   RPYFASPNYKRKLSSTRCSASGSRVEAKSLKLKLCRVPSFTRTMSRRKTREPKEETVTLG 60
           RPYFASPNYKRKLSSTRCSASGSRVEAKSLKLKLCRVPSFTRTMSRRKTREPKEETVTLG
Sbjct: 1   RPYFASPNYKRKLSSTRCSASGSRVEAKSLKLKLCRVPSFTRTMSRRKTREPKEETVTLG 60

Query: 61  PAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAA 120
           PAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAA
Sbjct: 61  PAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAA 120

Query: 121 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTD 180
           QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTD
Sbjct: 121 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTD 180

Query: 181 STRRKGGRRGRRL 194
           STRRKGGRRGRRL
Sbjct: 181 STRRKGGRRGRRL 193

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BLAST of Carg03659 vs. NCBI nr
Match: KAG6580713.1 (Beta-fructofuranosidase, insoluble isoenzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.3 bits (830), Expect = 7.0e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 28  KSLKLKLCRVPSFTRTMSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVT 87
           KSLKLKLCRVPSFTRTMSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVT
Sbjct: 329 KSLKLKLCRVPSFTRTMSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVT 388

Query: 88  DLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKT 147
           DLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKT
Sbjct: 389 DLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKT 448

Query: 148 KTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           KTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 449 KTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 494

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BLAST of Carg03659 vs. NCBI nr
Match: XP_004149195.1 (40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal protein S14-2 [Cucumis sativus] >XP_008442863.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_008442864.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_022144796.1 40S ribosomal protein S14-2 [Momordica charantia] >XP_022934060.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022934073.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022983150.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_022983152.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_023526342.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_023526400.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_038903581.1 40S ribosomal protein S14-2 [Benincasa hispida] >KAA0043860.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa] >KAG6580714.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia] >KGN59151.1 hypothetical protein Csa_001943 [Cucumis sativus] >KGN59153.1 hypothetical protein Csa_001079 [Cucumis sativus] >TYK25276.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 6.0e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

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BLAST of Carg03659 vs. NCBI nr
Match: XP_022946789.1 (40S ribosomal protein S14-2-like [Cucurbita moschata] >XP_023005923.1 40S ribosomal protein S14-2-like [Cucurbita maxima] >XP_023538913.1 40S ribosomal protein S14-2-like [Cucurbita pepo subsp. pepo] >KAG6596583.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294.3 bits (752), Expect = 7.8e-76
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMR+GRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRVGRIEDVTPIPTDSTRRKGGRRGRRL 150

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BLAST of Carg03659 vs. NCBI nr
Match: XP_038903512.1 (40S ribosomal protein S14-2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGR+EDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRMEDVTPIPTDSTRRKGGRRGRRL 150

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BLAST of Carg03659 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-74
Identity = 140/150 (93.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MS+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 279.3 bits (713), Expect = 3.4e-74
Identity = 139/150 (92.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MS+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.8e-74
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEE V LGP VREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Carg03659 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.9e-74
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 46  RRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 105
           R+KTREPKEE V LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK
Sbjct: 4   RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63

Query: 106 ADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 165
           ADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG
Sbjct: 64  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123

Query: 166 MRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           M+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 124 MKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-73
Identity = 138/150 (92.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MS+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

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BLAST of Carg03659 vs. ExPASy TrEMBL
Match: A0A6J1J4Y9 (40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. ExPASy TrEMBL
Match: A0A0A0LGP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. ExPASy TrEMBL
Match: A0A1S3B682 (40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. ExPASy TrEMBL
Match: A0A6J1F6L2 (40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

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BLAST of Carg03659 vs. ExPASy TrEMBL
Match: A0A5D3DNR5 (40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004100 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-75
Identity = 140/150 (93.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MS+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 279.3 bits (713), Expect = 2.4e-75
Identity = 139/150 (92.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MS+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 277.3 bits (708), Expect = 9.2e-75
Identity = 138/150 (92.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103
           MS+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 194
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Carg03659 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 47/148 (31.76%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 42  RTMSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 101
           R  SR+ TR    + V   P         GV H+ ASFN+T + VTD+ GR       G 
Sbjct: 7   RIGSRKNTRSGSRKNVRRIPK--------GVIHVQASFNNTIVTVTDVRGRVISWSSAGT 66

Query: 102 MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 161
              +  R   +P+AA  AA +  +   + G+    +++        K PG G  +ALRA+
Sbjct: 67  CGFRGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVRI--------KGPGLGRDAALRAI 126

Query: 162 ARSGMRIGRIEDVTPIPTDSTRRKGGRR 190
            RSG+ +  + DVTP+P +  R    RR
Sbjct: 127 RRSGILLSFVRDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of Carg03659 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017469.1	2.0e-100	100.00	40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6580713.1	7.0e-85	100.00	Beta-fructofuranosidase, insoluble isoenzyme 1, partial [Cucurbita argyrosperma ...	[more]
XP_004149195.1	6.0e-76	100.00	40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal prot...	[more]
XP_022946789.1	7.8e-76	99.33	40S ribosomal protein S14-2-like [Cucurbita moschata] >XP_023005923.1 40S riboso...	[more]
XP_038903512.1	1.3e-75	99.33	40S ribosomal protein S14-2-like isoform X2 [Benincasa hispida]	[more]

BLAST of Carg03659 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAX6	1.5e-74	93.33	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P42036	3.4e-74	92.67	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
P19950	5.8e-74	95.33	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
P19951	9.9e-74	95.27	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9SIH0	1.3e-73	92.00	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]

BLAST of Carg03659 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4Y9	2.9e-76	100.00	40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=...	[more]
A0A0A0LGP6	2.9e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1	[more]
A0A1S3B682	2.9e-76	100.00	40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1	[more]
A0A6J1F6L2	2.9e-76	100.00	40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 S...	[more]
A0A5D3DNR5	2.9e-76	100.00	40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Carg03659 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11510.1	1.1e-75	93.33	Ribosomal protein S11 family protein	[more]
AT3G52580.1	2.4e-75	92.67	Ribosomal protein S11 family protein	[more]
AT2G36160.1	9.2e-75	92.00	Ribosomal protein S11 family protein	[more]
ATCG00750.1	2.7e-10	31.76	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 71..189 e-value: 2.3E-47 score: 159.9
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 28..193
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 10..190 score: 21.053123
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 44..193 e-value: 2.1E-70 score: 237.5
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 28..193
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 66..191
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 158..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03659-RA	Carg03659-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044038	cell wall macromolecule biosynthetic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005887	integral component of plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome