Carg03618 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03618
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description33 kDa ribonucleoprotein, chloroplastic
LocationCarg_Chr14: 1640525 .. 1643623 (-)
RNA-Seq ExpressionCarg03618
SyntenyCarg03618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAATTAATTCAATTAATTAAGAAATATGTCTTTGTTCAAGGTTTAAATTGAACATAAATATATATATATATATAGATAGATAGCACAATGTTTTAACGTGGTTGGATTCAATAAAAAGTTTCCGATCAAAGCAACCTTATCCAGTGGGATTTTTTGTCTTTCAATTTCAAAGCTCCCCAATCCAATCCCCAAAATCCATCCCTGTAACTTGGGATTCCGCCATCTCCGGCTTCTATTACTGTTTTCTTACTCAAATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTGCAAGAAACTCTTCTTCGCCCAACATCTCAACCGAATTCCCTCCCGTTTTTCTCCAAAACAGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACATTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAAGGACTCGAAGTCTCCGACCCTATAACAGAAGACGCAGAGACTGAAGAATCGGACGGAGGCGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTTGTGATTGATCTAGCTTCTTTTTGTTTTACCTTTATCCGTCTGAATCCATTTTTCTAGGGCTTATTGGAGCTGCTTAGCCATTGTTGGTTTCTTATGTGATTTTCTTCCGGATCTTCTGTTAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTGTAACTACTTCTTATTCTTTCTCTCTTCATTTCATTTTGTCTTCGCTTAACAATTGTGGTGGAAACTAGGGATGGATATCCAGTTTGTTCAGCTTAACTTACTGATGGTTGCTGATTGATAACACCTTAAAGCTGAATCTTGCTGAGAGAAAAAAGTTGCCTCTATAAAACACTAACTTAAGTACATCATTCTCAATGAAACAAAACTTTGGAGAAAGTCCAAACCTGTAGGCAAGTTCTAATGTTTGGGTGTAACATCTGATAAATGTAAAATGATGGTAGTGCTTTTCCATTGATTGAATGGAAGCACCTGCATCTAGTGTTGGCATGGTTGGTGTCTGTGTGGGATTAGATGATATAATGGTAGAGTTAGATTTTAACAGCCGAAGCCCACCACTAGCAGATATTGTTCTCTTTGGGTTTTTCCTTTCGAGTTTCCCTCAAAGTTTTTAAAATGCGTTTGTTAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTTCCCTCTCCAAGCGATTTGGGATCTCACAATCCACTCTCTTCGGAGCCACTCATTGACATTCGTTATCTCACATAGTCATTAGTGTAAGACATTGAAGGGTGTGGATGATTCTAATGCAGTAGAGTTTACAAATGCTTGGTCCTCTAATAGTTTAGACACCACATTATGATATCTCTAAATGATTGAGTAATGTATTGATTGTTTGTTAGATATTTTTGCTATAAAGTTGCTAATGGATGAATTACTTGTCAGCTAATCGGAGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTGATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTCGTTGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGCCTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAATCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGTAAGAACGTGGAGTTACTTTTCAATATGATTCTAGAGATTAGACATGATGAACTTGTGACAGAATTTACTGATGTGATTGATCCTTAACTACATTAAAAGCTACCTCTAAATGGGCCGATGTTTACAACACATAAACCTAATCCAGAAATACATTAGTTTAGAAAAAGGCATGAGAAAATGTACCTGCATTTTGTACAATCATTCCTGTGTTATTGACTTCTTCCATGCAAATATGCTACCAGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGAAATCTGATGTTGATAGTTGAGTTGGCCCAAAAATTAAACTGAAACTGAAGGCTAGGGACTGTTGTCCAAATTGAATACCTTCAGGATTTCCCTCGCAATTCTCTTTCATTCCTTGCTCAACGACCAAGGAAGCCTATGTTTTTTTTTTTTTCAATGAGTGATGTGAGTTGAGGGAAAGTGCTAAAATGTTGCCGCAGATTAACGAGTATTATATGTATGACTTCAGAATTGGACTCTATGTATTATGGAGTCTCTTTGCTCCGAGTTAATACTACAATACATCAGTCTCTCAGCTTTTTCTTCCATTATCTTTGCTAATTAGAACTATGACCACTAATTGTTTGTCATCTCTCTCCCTCCCTACTGAGAATTAACAATTCAAGTGCCAAGAATTTCTCTTAAGAAAAAAAAGGAGTCTGAAAAGCTGGAGTCATAATGATGAAAGAAAGTTAACATATTGGAGAAAAATGTGCTTGTGCTTCCAAAACTAATGGTGTGTAAAAACAATAGACTTTAACAGAAAGTAGGTTTTTCAGATTTATACTAATTTTTTTCATCAAGAACTTGAGAACCAGCAAGGAGAGCATCTGCTGCAGAGTCTAGGTCTTGAGGAAAGAAAACTCTGCAAAATAGACCAACCGATGTAGAGAGAAAACAGTAAGACTCTATGAATAACGTTGCGGTCTAGCAGAAAGTCTAGAAATATTTGTATGAATTATGATATTAATT

mRNA sequence

AAAAAGAATTAATTCAATTAATTAAGAAATATGTCTTTGTTCAAGGTTTAAATTGAACATAAATATATATATATATATAGATAGATAGCACAATGTTTTAACGTGGTTGGATTCAATAAAAAGTTTCCGATCAAAGCAACCTTATCCAGTGGGATTTTTTGTCTTTCAATTTCAAAGCTCCCCAATCCAATCCCCAAAATCCATCCCTGTAACTTGGGATTCCGCCATCTCCGGCTTCTATTACTGTTTTCTTACTCAAATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTGCAAGAAACTCTTCTTCGCCCAACATCTCAACCGAATTCCCTCCCGTTTTTCTCCAAAACAGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACATTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAAGGACTCGAAGTCTCCGACCCTATAACAGAAGACGCAGAGACTGAAGAATCGGACGGAGGCGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTCTAATCGGAGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTGATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTCGTTGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGCCTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAATCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGAAATCTGATGTTGATAGTTGAGTTGGCCCAAAAATTAAACTGAAACTGAAGGCTAGGGACTGTTGTCCAAATTGAATACCTTCAGGATTTCCCTCGCAATTCTCTTTCATTCCTTGCTCAACGACCAAGGAAGCCTATGTTTTTTTTTTTTTCAATGAGTGATGTGAGTTGAGGGAAAGTGCTAAAATGTTGCCGCAGATTAACGAGTATTATATGTATGACTTCAGAATTGGACTCTATGTATTATGGAGTCTCTTTGCTCCGAGTTAATACTACAATACATCAGTCTCTCAGCTTTTTCTTCCATTATCTTTGCTAATTAGAACTATGACCACTAATTGTTTGTCATCTCTCTCCCTCCCTACTGAGAATTAACAATTCAAGTGCCAAGAATTTCTCTTAAGAAAAAAAAGGAGTCTGAAAAGCTGGAGTCATAATGATGAAAGAAAGTTAACATATTGGAGAAAAATGTGCTTGTGCTTCCAAAACTAATGGTGTGTAAAAACAATAGACTTTAACAGAAAGTAGGTTTTTCAGATTTATACTAATTTTTTTCATCAAGAACTTGAGAACCAGCAAGGAGAGCATCTGCTGCAGAGTCTAGGTCTTGAGGAAAGAAAACTCTGCAAAATAGACCAACCGATGTAGAGAGAAAACAGTAAGACTCTATGAATAACGTTGCGGTCTAGCAGAAAGTCTAGAAATATTTGTATGAATTATGATATTAATT

Coding sequence (CDS)

ATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTGCAAGAAACTCTTCTTCGCCCAACATCTCAACCGAATTCCCTCCCGTTTTTCTCCAAAACAGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACATTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAAGGACTCGAAGTCTCCGACCCTATAACAGAAGACGCAGAGACTGAAGAATCGGACGGAGGCGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTCTAATCGGAGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTGATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTCGTTGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGCCTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAATCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGA

Protein sequence

MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAPTSPAAFTRTENTIDSNELLTSISA
Homology
[Close]
BLAST of Carg03618 vs. NCBI nr
Match: KAG7017509.1 (hypothetical protein SDJN02_19374 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 615.9 bits (1587), Expect = 2.0e-172
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60

Query: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120
           NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK
Sbjct: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180

Query: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE
Sbjct: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240

Query: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300
           AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD
Sbjct: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300

Query: 301 RAPTSPAAFTRTENTIDSNELLTSISA 328
           RAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 RAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]
BLAST of Carg03618 vs. NCBI nr
Match: XP_022934919.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 611.7 bits (1576), Expect = 3.7e-171
Identity = 325/327 (99.39%), Postives = 325/327 (99.39%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPS FSPKQKPLKLLELRIHLP
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHLP 60

Query: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120
           NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDG EESREEDEQKVSASRDAGK
Sbjct: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAGK 120

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180

Query: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE
Sbjct: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240

Query: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300
           AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD
Sbjct: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300

Query: 301 RAPTSPAAFTRTENTIDSNELLTSISA 328
           RAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 RAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]
BLAST of Carg03618 vs. NCBI nr
Match: KAG6580756.1 (hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 609.4 bits (1570), Expect = 1.8e-170
Identity = 326/328 (99.39%), Postives = 326/328 (99.39%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASV-SSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASV SSSSSSSSSSPCKKLFFAQHLNRIPS FSPKQKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]
BLAST of Carg03618 vs. NCBI nr
Match: XP_023527627.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 605.9 bits (1561), Expect = 2.0e-169
Identity = 325/331 (98.19%), Postives = 325/331 (98.19%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASV----SSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELR 60
           MSASSLTMAAAAASV    SSSSSSSSSSPCKKLFFAQHLNRIPS FSPKQKPLKLLELR
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELR 60

Query: 61  IHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASR 120
           IHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDG EESREEDEQKVSASR
Sbjct: 61  IHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASR 120

Query: 121 DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 180
           DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA
Sbjct: 121 DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 180

Query: 181 IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ 240
           IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ
Sbjct: 181 IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ 240

Query: 241 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 300
           SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN
Sbjct: 241 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 300

Query: 301 MAADRAPTSPAAFTRTENTIDSNELLTSISA 328
           MAADRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 MAADRAPTSPAAFTRTENTIDSNELLTSISA 331

[Close]
BLAST of Carg03618 vs. NCBI nr
Match: XP_022983024.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 591.3 bits (1523), Expect = 5.2e-165
Identity = 318/328 (96.95%), Postives = 320/328 (97.56%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHL-NRIPSRFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFF   L NRIPS FSPK KPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]
BLAST of Carg03618 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.1e-80
Identity = 168/333 (50.45%), Postives = 231/333 (69.37%), Query Frame = 0 

Query: 5   SLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLPNIYP 64
           S    ++A +VS+++++SS++    L  +   +++  RF+PK       +L  + PN   
Sbjct: 2   SSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKS-----FKLVANCPNPLI 61

Query: 65  LAFSSASHLYCAPPAFEGLEVSDPI-----TEDAETEESDGGEESREEDEQKVSASRDAG 124
           L  +   H +      E     D I      E+   EE D GEE  EE++Q   AS + G
Sbjct: 62  LHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEG 121

Query: 125 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 184
           +LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA++M
Sbjct: 122 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 181

Query: 185 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 244
           F+ S IGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ L+
Sbjct: 182 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 241

Query: 245 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 304
           +AF +QPG+L AKVIY+R +GRSRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+A+
Sbjct: 242 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 301

Query: 305 DR-----APTSPAAFTRTENTIDSNELLTSISA 328
           +R     +P S       E +++SNE+L+++SA
Sbjct: 302 EREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]
BLAST of Carg03618 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.4e-80
Identity = 175/329 (53.19%), Postives = 232/329 (70.52%), Query Frame = 0 

Query: 8   MAAAAASVSSSSSSSSSS-----PCKKLFFAQH--LNRIPSRFSPKQKPLKLLELRIHLP 67
           M+    S ++++S+SS+S       K  F   H  L+   + F+ K   +   +L+ H P
Sbjct: 1   MSGCCFSFAATASTSSTSLLYLFTQKPKFSVDHLSLSTYNTHFNFK---INSTKLKAHFP 60

Query: 68  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 127
            I  L  SS     CA  + +G+EV     E+     ++  EE  E++E+  S S + G+
Sbjct: 61  -ISSLYRSSIFLSTCASVS-DGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGR 120

Query: 128 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 187
           LY+GNLP++MTSSQL+E+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+F
Sbjct: 121 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 180

Query: 188 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 247
           DGS +GGRTV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  NL W LTSQ LR+
Sbjct: 181 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRD 240

Query: 248 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 307
           AF +QPG +SAKVIYDR SGRSRGFGF++F +AE   SALD+MN VE+EGRPLRLN+A  
Sbjct: 241 AFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQ 300

Query: 308 RAPTS--PAAFTRTENTIDSNELLTSISA 328
           +AP S  P   T  EN  D++ELL+S+S+
Sbjct: 301 KAPVSSPPVVETSPENDSDNSELLSSLSS 324

[Close]
BLAST of Carg03618 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-41
Identity = 85/199 (42.71%), Postives = 129/199 (64.82%), Query Frame = 0 

Query: 120 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 179
           KL++GNLP+++ S+ L  +F  AG+V  V+VIYDK++ RSRGF FVTM+T EE + A + 
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 180 FDGSLIGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPH 239
           F+G  I GR +RVN    P           RGG     G +  +S        + VDS +
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208

Query: 240 KIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDS 299
           ++Y GNL WG+   +L+E F  Q  ++ AKV+YDR+SGRSRGFGFV++ +A++   A+DS
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268

Query: 300 MNGVEVEGRPLRLNMAADR 302
           +NG++++GR +R++ A +R
Sbjct: 269 LNGIDLDGRSIRVSAAEER 287

[Close]
BLAST of Carg03618 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.4e-40
Identity = 94/239 (39.33%), Postives = 142/239 (59.41%), Query Frame = 0 

Query: 82  GLEVSDPITEDAETEESDGGEESREEDEQKVSASR--DAGKLYIGNLPYAMTSSQLTEVF 141
           GL    P      T  +  G +  E+D +     R  +  KL++GNLP+++ S+ L  +F
Sbjct: 48  GLCSIKPFESSFSTRVALSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLF 107

Query: 142 AEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVP- 201
             AG+V  V+VIYDK+T RSRGF FVTM+T EE + A + F+G  I GR +RVN    P 
Sbjct: 108 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPA 167

Query: 202 ----------RGGEKEVMGPKIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLREAF 261
                     RGG     G +  +S        + VDS +++Y GNL WG+   +L+E F
Sbjct: 168 KRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF 227

Query: 262 ENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADR 302
             Q  ++ AKV+YDR+SGRSRGFGFV++ ++++   A+DS+NGV+++GR +R++ A +R
Sbjct: 228 SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286

[Close]
BLAST of Carg03618 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-38
Identity = 93/258 (36.05%), Postives = 151/258 (58.53%), Query Frame = 0 

Query: 59  LPNIYPLAFSSASHLYCAPPAFEGLEVSD-------------PITEDAETEESDGGEESR 118
           LP   P + +++   +  PP+   L +S               +++  + E+ + G++  
Sbjct: 18  LPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGDDGV 77

Query: 119 EEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFV 178
           EE+    + S D  K+++GNLP++  S+ L E+F  AG+V  V+VIYDK+T RSRGF FV
Sbjct: 78  EEER---NFSPDL-KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 137

Query: 179 TMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIY 238
           TM++ EE + A + F+G  + GR +RVN    P   E        R   +   DS +++Y
Sbjct: 138 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS--FDSSNRVY 197

Query: 239 AGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNG 298
            GNL WG+   +L   F  Q  ++ AKV+YDR+SGRSRGFGFV++ +AE+  +A++S++G
Sbjct: 198 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257

Query: 299 VEVEGRPLRLNMAADRAP 304
           V++ GR +R++ A  R P
Sbjct: 258 VDLNGRAIRVSPAEARPP 269

[Close]
BLAST of Carg03618 vs. ExPASy TrEMBL
Match: A0A6J1F948 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441950 PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 1.8e-171
Identity = 325/327 (99.39%), Postives = 325/327 (99.39%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPS FSPKQKPLKLLELRIHLP
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHLP 60

Query: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120
           NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDG EESREEDEQKVSASRDAGK
Sbjct: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAGK 120

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180

Query: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE
Sbjct: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240

Query: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300
           AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD
Sbjct: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300

Query: 301 RAPTSPAAFTRTENTIDSNELLTSISA 328
           RAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 RAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]
BLAST of Carg03618 vs. ExPASy TrEMBL
Match: A0A6J1J651 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481694 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.5e-165
Identity = 318/328 (96.95%), Postives = 320/328 (97.56%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHL-NRIPSRFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSPCKKLFF   L NRIPS FSPK KPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]
BLAST of Carg03618 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.3e-140
Identity = 272/327 (83.18%), Postives = 292/327 (89.30%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60
           MSA SL  AAAAA      S+SSS   KK FF QH N+IPS FSPK   LKLL L IHLP
Sbjct: 1   MSAYSLAAAAAAA------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLP 60

Query: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120
           N YPL+FSS SH++CAPPAF+ LE+SDP TE  + +ESDG E+++EEDEQK+S SR+AGK
Sbjct: 61  NFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGK 120

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 121 LYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180

Query: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+
Sbjct: 181 DGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRD 240

Query: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300
           AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA+
Sbjct: 241 AFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAE 300

Query: 301 RAPTSPAAFTRTENTIDSNELLTSISA 328
           RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 301 RAPTSPAAFPRTENTIDSKELLTSISA 321

[Close]
BLAST of Carg03618 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.6e-140
Identity = 272/327 (83.18%), Postives = 292/327 (89.30%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60
           MSA SL  AAAAA      S+SSS   KK FF QH N+IPS FSPK   LKLL L IHLP
Sbjct: 1   MSAYSLAAAAAAA------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLP 60

Query: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120
           N YPL+FSS SH++CAPPAF+ LE+SDP TE  + +ESDG E+++EEDEQK+S SR+AGK
Sbjct: 61  NFYPLSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGK 120

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 121 LYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180

Query: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+
Sbjct: 181 DGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRD 240

Query: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300
           AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA+
Sbjct: 241 AFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAE 300

Query: 301 RAPTSPAAFTRTENTIDSNELLTSISA 328
           RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 301 RAPTSPAAFPRTENTIDSKELLTSISA 321

[Close]
BLAST of Carg03618 vs. ExPASy TrEMBL
Match: A0A5A7TK11 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001350 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.6e-140
Identity = 272/327 (83.18%), Postives = 292/327 (89.30%), Query Frame = 0 

Query: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLP 60
           MSA SL  AAAAA      S+SSS   KK FF QH N+IPS FSPK   LKLL L IHLP
Sbjct: 48  MSAYSLAAAAAAA------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLP 107

Query: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGK 120
           N YPL+FSS SH++CAPPAF+ LE+SDP TE  + +ESDG E+++EEDEQK+S SR+AGK
Sbjct: 108 NFYPLSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGK 167

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 168 LYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 227

Query: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+
Sbjct: 228 DGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRD 287

Query: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300
           AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA+
Sbjct: 288 AFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAE 347

Query: 301 RAPTSPAAFTRTENTIDSNELLTSISA 328
           RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 348 RAPTSPAAFPRTENTIDSKELLTSISA 368

[Close]
BLAST of Carg03618 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-81
Identity = 168/333 (50.45%), Postives = 231/333 (69.37%), Query Frame = 0 

Query: 5   SLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHLPNIYP 64
           S    ++A +VS+++++SS++    L  +   +++  RF+PK       +L  + PN   
Sbjct: 2   SSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKS-----FKLVANCPNPLI 61

Query: 65  LAFSSASHLYCAPPAFEGLEVSDPI-----TEDAETEESDGGEESREEDEQKVSASRDAG 124
           L  +   H +      E     D I      E+   EE D GEE  EE++Q   AS + G
Sbjct: 62  LHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEG 121

Query: 125 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 184
           +LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA++M
Sbjct: 122 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 181

Query: 185 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 244
           F+ S IGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ L+
Sbjct: 182 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 241

Query: 245 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 304
           +AF +QPG+L AKVIY+R +GRSRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+A+
Sbjct: 242 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 301

Query: 305 DR-----APTSPAAFTRTENTIDSNELLTSISA 328
           +R     +P S       E +++SNE+L+++SA
Sbjct: 302 EREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]
BLAST of Carg03618 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-39
Identity = 90/227 (39.65%), Postives = 141/227 (62.11%), Query Frame = 0 

Query: 89  ITEDAETEESDGGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSV 148
           IT + E EE DG  +     EQ  SA     KL++GNLP+ + S+QL ++F  AG+V  V
Sbjct: 65  ITSEFEVEE-DGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMV 124

Query: 149 QVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGEKEVMG 208
           +VIYDK+T RSRGF FVTM+++ E + A + F+G  + GR +RVN  P  P+  +    G
Sbjct: 125 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRG 184

Query: 209 PKIRSSYNKF-----------VDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYD 268
           P  RSS+                S +++Y GNL WG+   +L   F  Q  ++ A+VIYD
Sbjct: 185 P--RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 244

Query: 269 RESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 304
           R+SGRS+GFGFV+++++++ ++A+ S++G +++GR +R++ A  R P
Sbjct: 245 RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

[Close]
BLAST of Carg03618 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-34
Identity = 107/335 (31.94%), Postives = 163/335 (48.66%), Query Frame = 0 

Query: 41  SRFSPKQKPLKL------------LELRIHLPNIYPLAFSSASHLYCAPPA-FEGLEVSD 100
           S F+PK  PL +            L  ++H  ++  +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 101 -PITEDAETEESD---GGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAG 160
             ++ D E EE D    G++S   +    S      KL++GNL + + S+QL ++F  AG
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDL---KLFVGNLSFNVDSAQLAQLFESAG 128

Query: 161 HVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGE 220
           +V  V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E
Sbjct: 129 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 188

Query: 221 KEVMGPKI------------------------------------------------RSSY 280
               GP+                                                 RSSY
Sbjct: 189 SFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSY 248

Query: 281 ------NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFV 304
                      S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV
Sbjct: 249 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 308

[Close]
BLAST of Carg03618 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-34
Identity = 107/335 (31.94%), Postives = 163/335 (48.66%), Query Frame = 0 

Query: 41  SRFSPKQKPLKL------------LELRIHLPNIYPLAFSSASHLYCAPPA-FEGLEVSD 100
           S F+PK  PL +            L  ++H  ++  +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 101 -PITEDAETEESD---GGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAG 160
             ++ D E EE D    G++S   +    S      KL++GNL + + S+QL ++F  AG
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDL---KLFVGNLSFNVDSAQLAQLFESAG 128

Query: 161 HVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGE 220
           +V  V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E
Sbjct: 129 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 188

Query: 221 KEVMGPKI------------------------------------------------RSSY 280
               GP+                                                 RSSY
Sbjct: 189 SFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSY 248

Query: 281 ------NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFV 304
                      S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV
Sbjct: 249 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 308

[Close]
BLAST of Carg03618 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-34
Identity = 107/335 (31.94%), Postives = 163/335 (48.66%), Query Frame = 0 

Query: 41  SRFSPKQKPLKL------------LELRIHLPNIYPLAFSSASHLYCAPPA-FEGLEVSD 100
           S F+PK  PL +            L  ++H  ++  +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 101 -PITEDAETEESD---GGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAG 160
             ++ D E EE D    G++S   +    S      KL++GNL + + S+QL ++F  AG
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDL---KLFVGNLSFNVDSAQLAQLFESAG 128

Query: 161 HVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGE 220
           +V  V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E
Sbjct: 129 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 188

Query: 221 KEVMGPKI------------------------------------------------RSSY 280
               GP+                                                 RSSY
Sbjct: 189 SFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSY 248

Query: 281 ------NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFV 304
                      S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV
Sbjct: 249 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 308

The following BLAST results are available for this feature:
BLAST of Carg03618 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017509.12.0e-172100.00hypothetical protein SDJN02_19374 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022934919.13.7e-17199.3933 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 ... [more]
KAG6580756.11.8e-17099.39hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527627.12.0e-16998.1933 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022983024.15.2e-16596.9533 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima][more]
BLAST of Carg03618 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q390613.1e-8050.45RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ... [more]
P196845.4e-8053.1933 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=... [more]
P493143.8e-4142.7131 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=... [more]
Q089375.4e-4039.3329 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S... [more]
Q089353.9e-3836.0529 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S... [more]
BLAST of Carg03618 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F9481.8e-17199.3933 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1J6512.5e-16596.9533 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481... [more]
A0A1S3B7N11.3e-14083.1833 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ... [more]
A0A5D3DPZ11.6e-14083.1833 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TK111.6e-14083.1833 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of Carg03618 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52380.12.2e-8150.45chloroplast RNA-binding protein 33 [more]
AT2G37220.14.7e-3939.65RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G53460.11.6e-3431.94chloroplast RNA-binding protein 29 [more]
AT3G53460.21.6e-3431.94chloroplast RNA-binding protein 29 [more]
AT3G53460.31.6e-3431.94chloroplast RNA-binding protein 29 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 223..296
e-value: 4.6E-26
score: 102.6
coord: 120..193
e-value: 8.8E-28
score: 108.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 224..294
e-value: 2.0E-19
score: 69.2
coord: 121..191
e-value: 7.6E-20
score: 70.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 119..197
score: 19.194885
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 222..300
score: 19.17783
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 207..309
e-value: 1.7E-25
score: 91.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 84..205
e-value: 8.2E-30
score: 105.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..115
NoneNo IPR availablePANTHERPTHR48025:SF11RNA-BINDING PROTEIN CP33, CHLOROPLASTICcoord: 8..310
NoneNo IPR availablePANTHERPTHR48025OS02G0815200 PROTEINcoord: 8..310
NoneNo IPR availableCDDcd12399RRM_HP0827_likecoord: 120..196
e-value: 2.59627E-32
score: 113.477
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 217..306
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 115..195

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03618-RACarg03618-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1901259 chloroplast rRNA processing
cellular_component GO:0009507 chloroplast
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding