Carg03592 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03592
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich SC35-like splicing factor SCL33
Location	Carg_Chr14: 1802427 .. 1806017 (+)
RNA-Seq Expression	Carg03592
Synteny	Carg03592

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGTATGAGGGCGTTCGAGGCAGAGAAGGCTGAAGCCTAAGGAAGATCGGAGAATTTTGCTCTTCCAGATTGAATAGTAGGGGCTCCATTTGATTTCTCTCAGGTTTTCGCTTTCTTCTTCTCCAACCTTTTTTTTTTTTTTTTTTTTTTGCTTACTTTTTGTATCTGTCAATATTTTCTCTAACGCAGATTGGATGTAAACGAGTTTTGATTCCAGCAATGCGGATGTTATAGTTGAAGTATGCATGAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCTTTTAATGTCGAAGTTTGTGTGCTATCCATTTGATCACGTTCGAAGAACAGTTGACGTGAAAAAGGCTGCAACCATGTCCGATTTTTTCTATTTGTGGTCATCGCACTATGAGAATTGATCTTTCCTTGAGATCCGTTTGTTTCGCTGTATGGCAGCATGCAAACATTTTGATTTCTCCGAAGTAGATCTCTTTTGTTCTGCAGAAATATTGGAGCAGATGATCGAAGGAAAAGTTTAGTATTACTTTTGATAAATTTTCTTTGGCTGTTTATTGTTGATCGAAGGAAAAGTTGTGTTTGAGTCTTGCTTTTGATAAAATTTCTTAGGCTGTTTATGGTTGATCACAATTATATATTTAGTGGATATCATGTTTGGTAATGAATGATCGTCCCTCTGACTATTTATTTTGAGTGGTGGCATAAATCTCTGGTAGCTTGCTGATTGATGTGTTACAAATTTAGGTTATATCTGCATCTTAATGTTCTGCACTTCTATTTGTTGTTTATAAACACCATGATTTGTTTTAATTTCCCTGTTGTTGTTATAGGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGTTTGCTACTGCAATTTATATTTCATGGCTATTTCACCCGTTGCGTCTTTTATACATACAATTATGTCTTGGTTCTTCGTTTCTCATCACATTTATTACATGCATGCTAAGGACAATGCTAGTATATGCTGTATGTGGTACTTAAATTATATATTTGTTGAAGTACGAAGAAATGGTATCTTTTACAAGTAAAAATGTTCTCTGGTTGATTAATTTTTTCTGCTTGTGTCTAGTTTTATTTATTTATTTGTTTTTATTGTTATTATTTGAAGGAAGGAGATCTTGCAAGTTCGAAGATCATAATTTATTTTCTTTTGTAAAGTATTTTATATTGTATATTACTTGGGTGGTTGTCTTTTGTATTTTCAAATTGAGAAAAAACCACTTCCGTTAAGAAAAGGAACAAAGGGATAAAGGAGAATGTGTTTGCTTTTGTTCTGCATTGAGCTGGTATACTTCTTCATTTGCACTTGTTTTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGCATACTTTTGAAGATTGTTCTTTTGCTTTGTATGTATGGATTTTTTTTCCTGTATGTTTAACTCATTTTAGTCCCTTAATTTTGTACGCATATGATCTATATATTTGTGAATATATTTTCTGGACGGTTATTTCTATTGATTGCTTAACGATGTGGAATTGGTCCCTCTGTTTTCAATTATTTGGTTTTCCAATAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTGTTGAAGAGAACCAATGAAGTAATAAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTTTTGTGTTGAAGACATTCAAATAAGTTCTGGTGACTTAATATGTGCATGAAGATTCGGTGGAAGTTGGGTTTGAATACATTGAGAAGTTCCAAGTCTTGAAGAATTTCCTCTCAATTTTTTCTTTGCCACTCGGAAGGTTAGCATAGTGATGTTAATATTCTCTTGTTAGAGCTCTATGTAGATGTTTCTGTCACTCGTAATTTATCTCTGAATGGATTAATGATGAATGATACCGCTGGTCAAAGTGACACTTTCTGAAATTTTCTGAATCAGTTGACATCCATTTTTCTAAATTATATTATGAACAGTAACATGCTTGTGAGTTCAGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGATGAGAGCAAGAGACTCATCGAGGTTGCTATCTCTTTCTTTAAACTGATTTCTAGTAACCAACTGCTATTGCTAAGCTAGGATGCTTAGTGATGAAAATATAACTCTTGACTTCTACAAATTCTCGTGAAGCATCCTCAATGTTTTCCTATATCTGAATAATTTCTTTCTAGACTGCGGTACAACCAGAGCATTGCTCCAGATACAGCTTTCTTGTCTTTGAAATTTTGCCCAAAGAGATATTCATCATTAATATGGAAAATCTTGGATGTTACTAGTGGTATAACGCTACACCATTGCATACTGGAAGGATAAAAAAGAATTATTTCACCAGACTCCTTTAGCGAAAACGCATGGAGGAGAAACTACTGCTCTTCACTTGTGGAACAGAAATGAGGGATTGAGACTTTGTCTGGGTTTTCTTTTGAATGTGATTGAGTGTTGAACGCATGAAAAACGGACCAAATAAAAGGTTTTTCCACTTTAGGTATCTTGAGTTTCCATTTCTTGGAGAAAAATCCAGCCTGAGGTTTGATTCCATCAACATTGAAGTGAATTACTTGAGTAAATTGACTTCAGCCATTTGACACCCATCATCGTGTATGCTTTTAGGGGAAAGAAAAGTTGTATACTTGATTCAAAATTGCCTCTGGCGTGGTGTACTTTATCCTTGGCCTTCTTTTGTTATGTGAAAAGTTTCTGGCTGATAGCAGCAACTACTCAGCTGATGCACCATTACAGTCTGTTTTCTTTTTCTTATCAATCTATAGTCCATCTTTTGAGAAATCCTTTATTAATTGTAAATATCAATACTCATTAGTATTGTTCATACATAAAATTGTTATCAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTAGGCGGTCATAATTTGTATTTTTTCCCATTATGATTATTGAATCACTAGGAGGAGGAGAGGGCAAGGGTGGTTTTTATTCTAATCTCATTTTATGTGAAATAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTATAGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT

mRNA sequence

ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGATGAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTATAGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT

Coding sequence (CDS)

ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGATGAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTATAGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT

Protein sequence

MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS

Homology

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BLAST of Carg03592 vs. NCBI nr
Match: KAG7017535.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSR 60
           MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSR
Sbjct: 1   MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSR 60

Query: 61  YLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAKY 120
           YLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAKY
Sbjct: 61  YLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAKY 120

Query: 121 EWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARS 180
           EWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARS
Sbjct: 121 EWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARS 180

Query: 181 AEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS 235
           AEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS
Sbjct: 181 AEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS 234

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BLAST of Carg03592 vs. NCBI nr
Match: KAG6596659.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.4 bits (838), Expect = 1.0e-85
Identity = 178/216 (82.41%), Postives = 188/216 (87.04%), Query Frame = 0


Query: 27  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLF 86
           KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLF
Sbjct: 45  KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 104

Query: 87  GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENR 146
           GRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE DGQVLLGRELTVVFAEENR
Sbjct: 105 GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 164

Query: 147 KRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGR 206
           KRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK +RS EYYSPAR RRYSRS+SPR R
Sbjct: 165 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDR 224

Query: 207 RYREQSYSRSPYDSRGCSYSRSRSHS---CYSRSYS 235
           RYRE+SYSRSPYDSR   YSRSRS S    YSRSYS
Sbjct: 225 RYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSRSYS 260

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BLAST of Carg03592 vs. NCBI nr
Match: XP_022151394.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia])

HSP 1 Score: 326.6 bits (836), Expect = 1.7e-85
Identity = 176/209 (84.21%), Postives = 185/209 (88.52%), Query Frame = 0


Query: 30  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRF 89
           MRGR  SYSPSPPRSYGRR+RSPSPR RGGR R L TSLLVRNLRHDCRPED+ GLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 90  GPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYEWDGQVLLGRELTVVFAEENRKRP 149
           GPLKDIYLPRDYYSGEPRGF FVQFVDPA   DAKYE DGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 150 EVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYR 209
           E MRARDSSRG SY+Y+RSPLRYS+SPHY RK +RS EYYSPA+  RYSRS+SPR RRYR
Sbjct: 121 EEMRARDSSRGRSYNYRRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDRRYR 180

Query: 210 EQSYSRSPYDSRGCSYSRSRSHSCYSRSY 234
           E+SY RSPYDSRG SYSRSRS S YSRSY
Sbjct: 181 ERSYLRSPYDSRGRSYSRSRSRS-YSRSY 208

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BLAST of Carg03592 vs. NCBI nr
Match: XP_023539101.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-84
Identity = 177/214 (82.71%), Postives = 186/214 (86.92%), Query Frame = 0


Query: 27  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLF 86
           KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLF
Sbjct: 8   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 67

Query: 87  GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENR 146
           GRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE DGQVLLGRELTVVFAEENR
Sbjct: 68  GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENR 127

Query: 147 KRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGR 206
           KRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK +RS EYYSPAR RRYSRS+SPR R
Sbjct: 128 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDR 187

Query: 207 RYREQSYSRSPYDSRGCSYSRSRSHS-CYSRSYS 235
           RYRE SYSRSPYDSR   YSRSRS S  YS SYS
Sbjct: 188 RYREISYSRSPYDSRDRGYSRSRSRSRSYSGSYS 221

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BLAST of Carg03592 vs. NCBI nr
Match: XP_022948463.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 175/214 (81.78%), Postives = 185/214 (86.45%), Query Frame = 0


Query: 27  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLF 86
           KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 87  GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENR 146
           GRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE DGQVLLGRELTVVFAEENR
Sbjct: 62  GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 147 KRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGR 206
           KRPE MRARDSS G SYSY+RSPL+YSQSP +GRK + S EYYSPAR  RYSRS+SPR R
Sbjct: 122 KRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDR 181

Query: 207 RYREQSYSRSPYDSRGCSYSRSRSHS-CYSRSYS 235
           RYRE+SYSRSPYDSR   YSRSRS S  YSRSYS
Sbjct: 182 RYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYS 215

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BLAST of Carg03592 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-56
Identity = 131/210 (62.38%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 30  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFG 89
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 90  PLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENRKRPE 149
           P+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+  DG +LLGRELTVVFAEENRK+P 
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 150 VMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRG 209
            MRAR+   G     +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR 
Sbjct: 121 EMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPRE 180

Query: 210 RRY-REQSYSRSPYD--SRGCSYSRSRSHS 228
            RY   +SYSRSP    SRG S +  R  S
Sbjct: 181 ERYDGRRSYSRSPASDGSRGRSLTPVRGKS 210

[Close]

BLAST of Carg03592 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.1e-54
Identity = 131/214 (61.21%), Postives = 155/214 (72.43%), Query Frame = 0


Query: 30  MRGRSYSPSPPRSYGRRNRSPSPRGR--GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRF 89
           MRGRSY+PSPPR YGRR RSPSPRGR  G R   L TSLLVRNLRHDCR ED+   F +F
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 90  GPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDGQVLLGRELTVVFAEENRKRP 149
           GP+KDIYLPRDYY+G+PRGF F+QF+DPAD   AK++ DG +LLGRELTVVFAEENRK+P
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 150 EVMRARDSSRGWSYSY---KRSPLRYSQS--PHYGRKN-ARSAEYYSPARCRRYSRSMSP 209
             MR RD   G S  +   +RSP RYS+S  P  GR++ +RS  Y SP   R  SRS+SP
Sbjct: 121 TEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSP 180

Query: 210 RGRRY-REQSYSRSPYDS----RGCSYSRSRSHS 228
           + RRY +E+SYSRSP  +    R  S  R +SHS
Sbjct: 181 QDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHS 213

[Close]

BLAST of Carg03592 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-28
Identity = 95/222 (42.79%), Postives = 115/222 (51.80%), Query Frame = 0


Query: 33  RSYSP---SPP-RSYGRRNRSPSP----------RGRGGRSRYLHTSLLVRNLRHDCRPE 92
           R YSP   SPP R YG R RSP P           G GGR    H SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 93  DVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDGQVLLGRELTVV 152
           ++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D   A+   + +   GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 153 FAEENRKRPEVMR------------ARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEY 212
            A E+RKRPE MR            +RD S G S S   S  R  + P   R   RS   
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRS- 181

Query: 213 YSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRS 226
           YSPA  RR           Y  +SYS     +   +  R R+
Sbjct: 182 YSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRN 222

[Close]

BLAST of Carg03592 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-26
Identity = 102/239 (42.68%), Postives = 130/239 (54.39%), Query Frame = 0


Query: 27  KLKMRGRSYSPSPPRSYGRRNRSPSPRGRGG----------RSRYLHTS----LLVRNLR 86
           + + R RSYSP P      R+RSP PR R G           SR   +S    LL+RNL 
Sbjct: 3   RARSRSRSYSPRP------RDRSP-PRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLP 62

Query: 87  HDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQF---VDPADAKYEWDGQVLLG 146
            D RP D+   F RFGPLKDIYLPR+YY+GEPRGF FV++    D A+A    + +V+ G
Sbjct: 63  LDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGG 122

Query: 147 RELTVVFAEENRKRPEVMRARDSSRGWSYSYK----RSPLR----YSQSPHYGRKNARSA 206
           RE+ +VFAEENRK P+ MR  + + G    YK    RSP R    +S+S    R+ +R +
Sbjct: 123 REIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHS 182

Query: 207 -----EYYSP-ARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS 235
                + YSP  R R  SRS  PR  R  +    RSP + R  +  RSR   C SRS S
Sbjct: 183 KVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSR---CLSRSRS 231

[Close]

BLAST of Carg03592 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.8e-20
Identity = 73/185 (39.46%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 59  SRYL---HTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP 118
           SRYL   +TSL VRN+  D R ED+   FGR+GP+ D+Y+P D+Y+  PRGF +VQF D 
Sbjct: 2   SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61

Query: 119 ADAK---YEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY--SQS 178
            DA+   +  D + + GR++ + FA+ +RK P  M+A++    +S S      RY  S+S
Sbjct: 62  RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRS 121

Query: 179 PHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYS-RSPYDSRGCSYSRSRSHSCY 235
             Y R+ +RS  +    R     R+  P GR  R +S+S    +  R  S+SRS+S+S  
Sbjct: 122 RSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNS-R 181

[Close]

BLAST of Carg03592 vs. ExPASy TrEMBL
Match: A0A6J1DCY5 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3673 GN=LOC111019338 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 8.3e-86
Identity = 176/209 (84.21%), Postives = 185/209 (88.52%), Query Frame = 0


Query: 30  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRF 89
           MRGR  SYSPSPPRSYGRR+RSPSPR RGGR R L TSLLVRNLRHDCRPED+ GLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 90  GPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYEWDGQVLLGRELTVVFAEENRKRP 149
           GPLKDIYLPRDYYSGEPRGF FVQFVDPA   DAKYE DGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 150 EVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYR 209
           E MRARDSSRG SY+Y+RSPLRYS+SPHY RK +RS EYYSPA+  RYSRS+SPR RRYR
Sbjct: 121 EEMRARDSSRGRSYNYRRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDRRYR 180

Query: 210 EQSYSRSPYDSRGCSYSRSRSHSCYSRSY 234
           E+SY RSPYDSRG SYSRSRS S YSRSY
Sbjct: 181 ERSYLRSPYDSRGRSYSRSRSRS-YSRSY 208

[Close]

BLAST of Carg03592 vs. ExPASy TrEMBL
Match: A0A6J1G9Y3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.9e-84
Identity = 175/214 (81.78%), Postives = 185/214 (86.45%), Query Frame = 0


Query: 27  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLF 86
           KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLF
Sbjct: 8   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 67

Query: 87  GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENR 146
           GRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE DGQVLLGRELTVVFAEENR
Sbjct: 68  GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 127

Query: 147 KRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGR 206
           KRPE MRARDSS G SYSY+RSPL+YSQSP +GRK + S EYYSPAR  RYSRS+SPR R
Sbjct: 128 KRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDR 187

Query: 207 RYREQSYSRSPYDSRGCSYSRSRSHS-CYSRSYS 235
           RYRE+SYSRSPYDSR   YSRSRS S  YSRSYS
Sbjct: 188 RYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYS 221

[Close]

BLAST of Carg03592 vs. ExPASy TrEMBL
Match: A0A6J1G9D2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.9e-84
Identity = 175/214 (81.78%), Postives = 185/214 (86.45%), Query Frame = 0


Query: 27  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLF 86
           KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 87  GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENR 146
           GRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE DGQVLLGRELTVVFAEENR
Sbjct: 62  GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 147 KRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGR 206
           KRPE MRARDSS G SYSY+RSPL+YSQSP +GRK + S EYYSPAR  RYSRS+SPR R
Sbjct: 122 KRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDR 181

Query: 207 RYREQSYSRSPYDSRGCSYSRSRSHS-CYSRSYS 235
           RYRE+SYSRSPYDSR   YSRSRS S  YSRSYS
Sbjct: 182 RYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYS 215

[Close]

BLAST of Carg03592 vs. ExPASy TrEMBL
Match: A0A1S3B7U0 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=LOC103486733 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.3e-83
Identity = 179/212 (84.43%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 30  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRF 89
           MRGR  SYSPSPPRSYGRR RSPSPR RGGR R L TSLLVRNLRHDCRPED+ GLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 90  GPLKDIYLPRDYYSGEPRGFRFVQFV---DPADAKYEWDGQVLLGRELTVVFAEENRKRP 149
           GPLKDIYLPRDYYSGEPRGF FVQFV   D ADAKYE DGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 150 EVMRARDSSRGWSYSYKR--SPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRR 209
           E MRARDSSRG SYSY R  SPLRYS+SPHY RK +RS EYYSPAR RRYSR  SPRGRR
Sbjct: 121 EEMRARDSSRGRSYSYSRRHSPLRYSRSPHYDRKYSRSPEYYSPARSRRYSR--SPRGRR 180

Query: 210 YREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS 235
           YREQSYSRSPYD RG SYSRSRS S YSRSYS
Sbjct: 181 YREQSYSRSPYDPRGRSYSRSRSRS-YSRSYS 209

[Close]

BLAST of Carg03592 vs. ExPASy TrEMBL
Match: A0A6J1L0E4 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 3.0e-83
Identity = 173/216 (80.09%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 27  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLF 86
           KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 87  GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENR 146
           G+FGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE DGQVLLGRELTVVFAEENR
Sbjct: 62  GQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 147 KRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGR 206
           KRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK +RS EYYSPAR RRYSRS+SPR +
Sbjct: 122 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQ 181

Query: 207 RYREQSYSRSPYDSRGCSYSRSRSHS---CYSRSYS 235
            +RE+SYSRSPY+SR   YSRSRS S    YSRSYS
Sbjct: 182 MHRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRSYS 217

[Close]

BLAST of Carg03592 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 221.5 bits (563), Expect = 7.2e-58
Identity = 131/210 (62.38%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 30  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFG 89
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 90  PLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENRKRPE 149
           P+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+  DG +LLGRELTVVFAEENRK+P 
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 150 VMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRG 209
            MRAR+   G     +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR 
Sbjct: 121 EMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPRE 180

Query: 210 RRY-REQSYSRSPYD--SRGCSYSRSRSHS 228
            RY   +SYSRSP    SRG S +  R  S
Sbjct: 181 ERYDGRRSYSRSPASDGSRGRSLTPVRGKS 210

[Close]

BLAST of Carg03592 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 221.5 bits (563), Expect = 7.2e-58
Identity = 131/210 (62.38%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 30  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFG 89
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 90  PLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQVLLGRELTVVFAEENRKRPE 149
           P+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+  DG +LLGRELTVVFAEENRK+P 
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 150 VMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRG 209
            MRAR+   G     +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR 
Sbjct: 121 EMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPRE 180

Query: 210 RRY-REQSYSRSPYD--SRGCSYSRSRSHS 228
            RY   +SYSRSP    SRG S +  R  S
Sbjct: 181 ERYDGRRSYSRSPASDGSRGRSLTPVRGKS 210

[Close]

BLAST of Carg03592 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-55
Identity = 131/214 (61.21%), Postives = 155/214 (72.43%), Query Frame = 0


Query: 30  MRGRSYSPSPPRSYGRRNRSPSPRGR--GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRF 89
           MRGRSY+PSPPR YGRR RSPSPRGR  G R   L TSLLVRNLRHDCR ED+   F +F
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 90  GPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDGQVLLGRELTVVFAEENRKRP 149
           GP+KDIYLPRDYY+G+PRGF F+QF+DPAD   AK++ DG +LLGRELTVVFAEENRK+P
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 150 EVMRARDSSRGWSYSY---KRSPLRYSQS--PHYGRKN-ARSAEYYSPARCRRYSRSMSP 209
             MR RD   G S  +   +RSP RYS+S  P  GR++ +RS  Y SP   R  SRS+SP
Sbjct: 121 TEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSP 180

Query: 210 RGRRY-REQSYSRSPYDS----RGCSYSRSRSHS 228
           + RRY +E+SYSRSP  +    R  S  R +SHS
Sbjct: 181 QDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHS 213

[Close]

BLAST of Carg03592 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-54
Identity = 131/223 (58.74%), Postives = 151/223 (67.71%), Query Frame = 0


Query: 30  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFG 89
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 90  PLKDIYLPRDYYSG------------EPRGFRFVQFVDP---ADAKYEWDGQVLLGRELT 149
           P+KDIYLPRDYY+G            +PRGF FVQF+DP   ADAK+  DG +LLGRELT
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 120

Query: 150 VVFAEENRKRPEVMRARDSSRGWSY-SYKRSPLRY-----SQSPHYGRKNARSAEYYSPA 209
           VVFAEENRK+P  MRAR+   G  +   +R+P RY     S  P  GR  +RS +YYSP 
Sbjct: 121 VVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPP 180

Query: 210 RCRRYSRSMSPRGRRY-REQSYSRSPYD--SRGCSYSRSRSHS 228
             R + RS+SPR  RY   +SYSRSP    SRG S +  R  S
Sbjct: 181 PRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKS 223

[Close]

BLAST of Carg03592 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-29
Identity = 95/222 (42.79%), Postives = 115/222 (51.80%), Query Frame = 0


Query: 33  RSYSP---SPP-RSYGRRNRSPSP----------RGRGGRSRYLHTSLLVRNLRHDCRPE 92
           R YSP   SPP R YG R RSP P           G GGR    H SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 93  DVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDGQVLLGRELTVV 152
           ++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D   A+   + +   GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 153 FAEENRKRPEVMR------------ARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEY 212
            A E+RKRPE MR            +RD S G S S   S  R  + P   R   RS   
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRS- 181

Query: 213 YSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRS 226
           YSPA  RR           Y  +SYS     +   +  R R+
Sbjct: 182 YSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRN 222

The following BLAST results are available for this feature:

BLAST of Carg03592 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017535.1	1.5e-129	100.00	Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro...	[more]
KAG6596659.1	1.0e-85	82.41	Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro...	[more]
XP_022151394.1	1.7e-85	84.21	serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia]	[more]
XP_023539101.1	1.1e-84	82.71	serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo...	[more]
XP_022948463.1	1.2e-83	81.78	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita mosch...	[more]

BLAST of Carg03592 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	1.0e-56	62.38	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	8.1e-54	61.21	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	3.4e-28	42.79	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	3.2e-26	42.68	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	5.8e-20	39.46	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of Carg03592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCY5	8.3e-86	84.21	serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3...	[more]
A0A6J1G9Y3	5.9e-84	81.78	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita mos...	[more]
A0A6J1G9D2	5.9e-84	81.78	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita mos...	[more]
A0A1S3B7U0	2.3e-83	84.43	serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1L0E4	3.0e-83	80.09	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max...	[more]

BLAST of Carg03592 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	7.2e-58	62.38	SC35-like splicing factor 33	[more]
AT1G55310.2	7.2e-58	62.38	SC35-like splicing factor 33	[more]
AT3G13570.1	5.7e-55	61.21	SC35-like splicing factor 30A	[more]
AT1G55310.3	1.7e-54	58.74	SC35-like splicing factor 33	[more]
AT3G55460.1	2.4e-29	42.79	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 65..135 e-value: 5.9E-14 score: 62.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..130 e-value: 2.8E-11 score: 43.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..139 score: 15.203922
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..150 e-value: 6.8E-19 score: 70.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 30..227
None	No IPR available	PANTHER	PTHR23147:SF149	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 30..227
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 64..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03592-RA	Carg03592-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding